pycom16g14980

Receptor-like cytosolic serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
10972263 .. 10974115
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g14980.1

Sequence Viewer

Length: 1182 bp
ATGTTGAAAAAAGGACCCCAGAATCCCTTCCCAACCTTCCCTCCTAAAGGTGCTCAAAAACCAAAACTCACCAGAAAGAAAACCAAAAGAATAAGAGAGGAATTCATTCCACAGCCCAACTCTCCTGCTCCTAGGTCTTTCGATGCTGACTTTTGCTGCTTCAAATCTTCCTGGAAGAATTACTCACTCTTAGAGCTCCAAGCCGCAACCAACAACTTCAGCCACGAGAACTTGATCGGGGAGGGAGGCTATGCTGACGTCTACAAGGGAACATTGGAAGATGGGCAGATTGTCGCGATCAAATGCCTGACTCGCGGTACTCAAGAAGAAATGACTGCAGACTTCTTATCTGAGCTTGGTGTCATAGTTCATGTTGACCATCCCAATATTGCGAAATTGATTGGCTATGGGGTTGATGGAGGGATGCATCTTGTTCTACATTTGTCTCCCCATGGAAGCCTATCGTCTATACTTTACGGACCTAGAGAGAATCTGGATTGGGGCATCAGATATAAAGTCGCTTTAGGGACAGCTAAGGGCCTTCTGTATCTTCATGAGGGGTGCCAGAGGAGAATTATTCACAAAGATATTAAGGCTTCTAATATTTTGCTGGCAGAGGATTTTGAGCCTCTGATATCTGATTTTGGGCTTGCAAAATGGCTACCAGATTCATGGACTCACCATGTTGTATCGAAATTCGAAGGCACATTTGGATATCTTCCTCCCGAGTTTTTCATGCACGGCATAGTAGATGAAAAAACCGATGTCTATGCTTACGGGGTGCTAATATTAGAGCTCATCACAGGCAGGCAAGCTTTGGATAGTTCACATAAAAGCCTTGTCATGTGGGCCAAACCTTTGCTCTCTATGAATAATATGAATGAGCTAGTTGATCCATGCCTTGGCGATGCCTATGATTTGAAAGAAATGAAACGTCTTGCGTTAACTGCTTCGTTTTGTGTACACCAGTCTTCAGTGAATCGACCGCAAATGAGCCAGATCGTCGAAATTTTAGAAGGCGATGAAGGCAGTTTGGAGTACGCTACAAAACGTCAAAAGTCTAAACTTCAAAGGACGTATTCGGAGGAGCTCTTGGATGCAGATGACTACAACTCAACCAAGTGTTTAAGTGATAGAGAGAAACAACTGGAGTTTATCTTGGGCACTTCTAATGAGGCCTAA

Protein Analysis

394

Amino Acids

44.16

Weight (kDa)

6.03

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 74 - 280 1.9e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 76 - 338 7.2e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 561
AccB7I CCANNNNNTGG 1 cut(s) 902
AccI GTMKAC 1 cut(s) 261
AccII CGCG 2 cut(s) 296, 315
AciI CCGC 3 cut(s) 204, 315, 986
AclWI GGATC 1 cut(s) 887
AcsI RAATTY 3 cut(s) 101, 695, 1008
AcuI CTGAAG 2 cut(s) 202, 957
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 3 cut(s) 319, 963, 1040
AfiI CCNNNNNNNGG 2 cut(s) 47, 902
AgsI TTSAA 4 cut(s) 7, 163, 922, 1070
AjnI CCWGG 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 7 cut(s) 196, 355, 533, 796, 815, 886, 1090
AluI AGCT 7 cut(s) 196, 355, 533, 796, 815, 886, 1090
Alw21I GWGCWC 4 cut(s) 55, 198, 798, 1092
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 3 cut(s) 538, 849, 1176
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 3 cut(s) 101, 695, 1008
Asp700I GAANNNNTTC 2 cut(s) 26, 105
AspA2I CCTAGG 1 cut(s) 131
AspS9I GGNCC 4 cut(s) 14, 479, 538, 849
AsuHPI GGTGA 2 cut(s) 61, 671
AsuII TTCGAA 1 cut(s) 699
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 2 cut(s) 14, 479
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 1166
BanI GGYRCC 1 cut(s) 561
BanII GRGCYC 3 cut(s) 198, 798, 1092
BauI CACGAG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 963
Bbv12I GWGCWC 4 cut(s) 55, 198, 798, 1092
BbvI GCAGC 1 cut(s) 143
BccI CCATC 3 cut(s) 275, 387, 410
BceAI ACGGC 1 cut(s) 757
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 3 cut(s) 132, 483, 887
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 157, 204
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 2 cut(s) 158, 205
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 2 cut(s) 14, 479
BmeT110I CYCGRG 1 cut(s) 725
BmgT120I GGNCC 4 cut(s) 14, 479, 538, 849
BmiI GGNNCC 2 cut(s) 16, 563
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 6 cut(s) 133, 414, 436, 513, 898, 1087
BpiI GAAGAC 1 cut(s) 963
BpmI CTGGAG 1 cut(s) 1169
Bpu10I CCTNAGC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 131, 451, 901
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 902
Bse1I ACTGG 2 cut(s) 967, 1152
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 131, 451, 901
BseGI GGATG 3 cut(s) 379, 429, 1102
BseLI CCNNNNNNNGG 2 cut(s) 47, 902
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 967, 1152
BseRI GAGGAG 2 cut(s) 583, 1100
BseSI GKGCMC 1 cut(s) 1166
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 296, 315
Bsh1285I CGRYCG 1 cut(s) 986
BshFI GGCC 3 cut(s) 540, 851, 1178
BshNI GGYRCC 1 cut(s) 561
BsiEI CGRYCG 1 cut(s) 986
BsiHKAI GWGCWC 4 cut(s) 55, 198, 798, 1092
BsiHKCI CYCGRG 1 cut(s) 725
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 47, 902
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 3 cut(s) 540, 851, 1178
BsoBI CYCGRG 1 cut(s) 725
Bsp119I TTCGAA 1 cut(s) 699
Bsp1286I GDGCHC 5 cut(s) 55, 198, 798, 1092, 1166
Bsp1407I TGTACA 1 cut(s) 961
Bsp143I GATC 4 cut(s) 234, 297, 892, 999
Bsp19I CCATGG 1 cut(s) 451
Bsp68I TCGCGA 1 cut(s) 296
BspACI CCGC 3 cut(s) 204, 315, 986
BspANI GGCC 3 cut(s) 540, 851, 1178
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 2 cut(s) 296, 315
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 16, 563
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 887
BspT104I TTCGAA 1 cut(s) 699
BspT107I GGYRCC 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 961
BsrI ACTGG 2 cut(s) 967, 1152
BssECI CCNNGG 3 cut(s) 131, 451, 901
BssMI GATC 4 cut(s) 234, 297, 892, 999
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 3 cut(s) 131, 451, 901
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 961
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 4 cut(s) 612, 651, 809, 813
BstDEI CTNAG 3 cut(s) 190, 351, 534
BstDSI CCRYGG 1 cut(s) 451
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 379, 429, 1102
BstFNI CGCG 2 cut(s) 296, 315
BstKTI GATC 4 cut(s) 237, 300, 895, 1002
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 4 cut(s) 234, 297, 892, 999
BstMCI CGRYCG 1 cut(s) 986
BstMWI GCNNNNNNNGC 3 cut(s) 312, 947, 1026
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 1166
BstUI CGCG 2 cut(s) 296, 315
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 963
BstXI CCANNNNNNTGG 1 cut(s) 672
BsuRI GGCC 3 cut(s) 540, 851, 1178
BtgI CCRYGG 1 cut(s) 451
BtgZI GCGATG 2 cut(s) 921, 1035
BtsCI GGATG 3 cut(s) 379, 429, 1102
BtsIMutI CAGTG 1 cut(s) 981
BtuMI TCGCGA 1 cut(s) 296
Cac8I GCNNGC 4 cut(s) 612, 651, 809, 813
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 4 cut(s) 14, 479, 538, 849
Csp6I GTAC 3 cut(s) 318, 962, 1039
CviAII CATG 8 cut(s) 371, 452, 554, 672, 683, 736, 844, 897
CviQI GTAC 3 cut(s) 318, 962, 1039
DdeI CTNAG 3 cut(s) 190, 351, 534
DpnI GATC 4 cut(s) 236, 299, 894, 1001
DpnII GATC 4 cut(s) 234, 297, 892, 999
Ecl136II GAGCTC 3 cut(s) 196, 796, 1090
Eco130I CCWWGG 3 cut(s) 131, 451, 901
Eco147I AGGCCT 1 cut(s) 1178
Eco24I GRGCYC 3 cut(s) 198, 798, 1092
Eco32I GATATC 2 cut(s) 636, 716
Eco47I GGWCC 2 cut(s) 14, 479
Eco53kI GAGCTC 3 cut(s) 196, 796, 1090
Eco57I CTGAAG 2 cut(s) 202, 957
Eco88I CYCGRG 1 cut(s) 725
EcoICRI GAGCTC 3 cut(s) 196, 796, 1090
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 14, 538
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 170
EcoRV GATATC 2 cut(s) 636, 716
EcoT14I CCWWGG 3 cut(s) 131, 451, 901
EcoT22I ATGCAT 1 cut(s) 429
EcoT38I GRGCYC 3 cut(s) 198, 798, 1092
ErhI CCWWGG 3 cut(s) 131, 451, 901
FaeI CATG 8 cut(s) 374, 455, 557, 675, 686, 739, 847, 900
FaqI GGGAC 1 cut(s) 541
FatI CATG 8 cut(s) 370, 451, 553, 671, 682, 735, 843, 896
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 157, 204
FokI GGATG 3 cut(s) 366, 436, 1109
FriOI GRGCYC 3 cut(s) 198, 798, 1092
Fsp4HI GCNGC 2 cut(s) 157, 204
FspBI CTAG 3 cut(s) 132, 483, 887
GluI GCNGC 2 cut(s) 157, 204
GsuI CTGGAG 1 cut(s) 1169
HaeIII GGCC 3 cut(s) 540, 851, 1178
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 8 cut(s) 374, 455, 557, 675, 686, 739, 847, 900
HincII GTYRAC 2 cut(s) 376, 945
HindII GTYRAC 2 cut(s) 376, 945
HindIII AAGCTT 1 cut(s) 813
HinfI GANTC 6 cut(s) 22, 310, 490, 668, 676, 979
HpaI GTTAAC 1 cut(s) 945
HphI GGTGA 2 cut(s) 61, 671
Hpy166II GTNNAC 6 cut(s) 262, 376, 827, 945, 962, 964
Hpy188I TCNGA 5 cut(s) 352, 509, 633, 640, 1084
Hpy188III TCNNGA 5 cut(s) 295, 323, 494, 554, 725
Hpy8I GTNNAC 6 cut(s) 262, 376, 827, 945, 962, 964
Hpy99I CGWCG 1 cut(s) 1007
HpyAV CCTTC 6 cut(s) 37, 46, 551, 695, 1010, 1019
HpyCH4IV ACGT 4 cut(s) 258, 934, 1051, 1076
HpyCH4V TGCA 5 cut(s) 338, 427, 653, 739, 1100
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 947, 1026
HpyF3I CTNAG 3 cut(s) 190, 351, 534
HpySE526I ACGT 4 cut(s) 258, 934, 1051, 1076
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 8 cut(s) 374, 455, 557, 675, 686, 739, 847, 900
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 4 cut(s) 234, 297, 892, 999
LmnI GCTCC 3 cut(s) 133, 201, 1087
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 6 cut(s) 133, 414, 436, 513, 898, 1087
MaeI CTAG 3 cut(s) 132, 483, 887
MaeII ACGT 4 cut(s) 258, 934, 1051, 1076
MalI GATC 4 cut(s) 236, 299, 894, 1001
MboI GATC 4 cut(s) 234, 297, 892, 999
MboII GAAGA 7 cut(s) 159, 187, 290, 338, 542, 710, 963
MhlI GDGCHC 5 cut(s) 55, 198, 798, 1092, 1166
MluCI AATT 6 cut(s) 101, 178, 395, 573, 695, 1008
MlyI GAGTC 2 cut(s) 304, 670
Mph1103I ATGCAT 1 cut(s) 429
MroXI GAANNNNTTC 2 cut(s) 26, 105
MseI TTAA 3 cut(s) 591, 944, 1127
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 2 cut(s) 296, 315
MwoI GCNNNNNNNGC 3 cut(s) 312, 947, 1026
NcoI CCATGG 1 cut(s) 451
NdeII GATC 4 cut(s) 234, 297, 892, 999
NlaIII CATG 8 cut(s) 374, 455, 557, 675, 686, 739, 847, 900
NlaIV GGNNCC 2 cut(s) 16, 563
NruI TCGCGA 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 429
NspV TTCGAA 1 cut(s) 699
PagI TCATGA 1 cut(s) 553
PceI AGGCCT 1 cut(s) 1178
PdmI GAANNNNTTC 2 cut(s) 26, 105
PfeI GAWTC 4 cut(s) 22, 490, 668, 979
PflMI CCANNNNNTGG 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 2 cut(s) 158, 205
PleI GAGTC 2 cut(s) 304, 670
PpsI GAGTC 2 cut(s) 304, 670
PpuMI RGGWCCY 1 cut(s) 14
Psp124BI GAGCTC 3 cut(s) 198, 798, 1092
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 16, 563
PspPI GGNCC 4 cut(s) 14, 479, 538, 849
PspPPI RGGWCCY 1 cut(s) 14
PstI CTGCAG 1 cut(s) 340
RruI TCGCGA 1 cut(s) 296
RsaI GTAC 3 cut(s) 319, 963, 1040
RsaNI GTAC 3 cut(s) 318, 962, 1039
SacI GAGCTC 3 cut(s) 198, 798, 1092
SaqAI TTAA 3 cut(s) 591, 944, 1127
SatI GCNGC 2 cut(s) 157, 204
Sau3AI GATC 4 cut(s) 234, 297, 892, 999
Sau96I GGNCC 4 cut(s) 14, 479, 538, 849
SchI GAGTC 2 cut(s) 304, 670
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 5 cut(s) 55, 198, 798, 1092, 1166
SfaNI GCATC 6 cut(s) 133, 414, 436, 513, 898, 1087
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 699
SinI GGWCC 2 cut(s) 14, 479
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 6 cut(s) 101, 178, 395, 573, 695, 1008
SseBI AGGCCT 1 cut(s) 1178
SsiI CCGC 3 cut(s) 204, 315, 986
SspI AATATT 3 cut(s) 388, 604, 789
SspMI CTAG 3 cut(s) 132, 483, 887
SstI GAGCTC 3 cut(s) 198, 798, 1092
StuI AGGCCT 1 cut(s) 1178
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 3 cut(s) 131, 451, 901
TaiI ACGT 4 cut(s) 261, 937, 1054, 1079
TaqI TCGA 5 cut(s) 141, 692, 699, 982, 1005
TasI AATT 6 cut(s) 101, 178, 395, 573, 695, 1008
TatI WGTACW 1 cut(s) 961
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 22, 490, 668, 979
Tru1I TTAA 3 cut(s) 591, 944, 1127
Tru9I TTAA 3 cut(s) 591, 944, 1127
TscAI CASTG 1 cut(s) 981
TseI GCWGC 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 981
Van91I CCANNNNNTGG 1 cut(s) 902
VpaK11BI GGWCC 2 cut(s) 14, 479
XagI CCTNNNNNAGG 1 cut(s) 45
XapI RAATTY 3 cut(s) 101, 695, 1008
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 26, 105
XspI CTAG 3 cut(s) 132, 483, 887
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.