Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005610

Physical Location & Seq

Genomic Coordinates Forward (+)

39141672 .. 39144870

Gene Structure 3199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTAATCGCCTCCGTGCCTGCTCTTCAGTTCATAGCTTCTGGGTTTGCGGCTTTTGTCTCTAAGCACAATGGCTCGCGCGACGTACCCAAAGAAAATCAAGAAGGACAGGCTGCTAGCTCGGCACCAGCTGCTACTACCGTGGCTGCTAGTCCTGCAGGAGGTAGTACAACAAGAAGATCAAGAGCTGGATTCTCCGACACCTTTTCAAACCATGATTTGAGAGCATTGAGATTGGAGGAGACGGTCATAGATGACTGTACTCCTCGAGATGTTCTTGAGGATGACCACTCAAGAAGCTTAGAGTCTGAAGCATCAACTCCCAAGGCAAGCACTTCAGACTCGGAAGGAAAAGTTAATAATGGCCCCATTCGTGGTTTCTTCAGAATGTTGAGAAGAGGACAGCAACCTTTCCCTCCTGTGAAGATTCCAGCAAAACCAAAACTCACAAGACGGAAAAGTAAACGAATAAGAGAAGACCTCATTCCACCACTCAACAGTCCTGCTCTGAGGTCTCCTCTGGATCCTGAACTATACGGCTTCAAATCTTCCTGGAAGAATTATTCACTCTCAGAGCTCCAAGCTGCAACTAACAACTTTGGCAATGAGAACTTGATTGGGGAGGGGGGCTATGCTGAAGTTTACAAGGGGACATTGGAAGATGGGCAGATTGTCGCAATTAAACGTCTAACTAGAGGTAACCCAGAAGAAATGACAGCAGACTTCTTATCTGAGCTTGGTGTTATAGTTCATGTTGACCACCCCAACATAGCAAAACTGATTGGGTATGGGGTTGAAGGAGGGATGCACCTTGTTCTTCATTTGTCTCCCCACGGGAGCCTAGCATCTATACTATATGAGCTAGCTGATCCAAGCCTTGTTGATGTCTATGATGTGGAACAAATGAAATGTCTTGCCTCGATAGCTTCGATGTGTGTACAGCAGTCTTCAGTGAATCGACCACAAATGAGACAGGCACGTATTCTTCTTTTTTATATAATTGTCCAGGTCTTAGAAGGTGATCAAGAGAGTTTGGATCTTGTAAAAAAACGGCAAAAGTCTAAAAAACTTGAGAGGACATATTCTGAGGAGCTCTTAGATGCAGACGAGTACAACTCCACCAAGTATTTAACTGATCTGGATAAGCGTCTGGAGTTTGTTTTAGGCCCCTCTAATGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

394

Amino Acids

43.39

Weight (kDa)

5.98

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	203 - 286	1.3e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	204 - 288	2.6e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18910
fragaria_vesca	FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761
malus_domestica	MD13G1176500.v1.1 MD16G1178300.v1.1
prunus_persica	Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1
pyrus_communis	pycom13g15230 pycom16g14980
rosa_chinensis	RchiOBHm_Chr4g0420341
rosa_laevigata	RLG00000007771
rosa_multiflora	Rmu_sc0002248.1_g000002 Rmu_sc0016213.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362990
rosa_rugosa	Rorug04G0163500
rosa_samantha	Rh4AG224600 Rh4BG227600 Rh4CG239100 Rh4DG223100
rosa_wichuraiana	Rw4G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	2 cut(s)	79, 81
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	4 cut(s)	518, 531, 863, 1044
AcuI	CTGAAG	6 cut(s)	11, 321, 330, 367, 657, 933
AfaI	GTAC	5 cut(s)	87, 169, 262, 939, 1112
AfiI	CCNNNNNNNGG	2 cut(s)	161, 374
AgsI	TTSAA	3 cut(s)	210, 544, 797
AjnI	CCWGG	2 cut(s)	551, 1005
Alw21I	GWGCWC	2 cut(s)	579, 1095
Alw26I	GTCTC	5 cut(s)	64, 236, 519, 831, 964
AlwI	GGATC	4 cut(s)	518, 531, 863, 1044
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	2 cut(s)	364, 1165
ApeKI	GCWGC	4 cut(s)	113, 131, 146, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	895, 927
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	365, 1166
AsuHPI	GGTGA	1 cut(s)	1031
AsuNHI	GCTAGC	2 cut(s)	116, 862
AvaI	CYCGRG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	2 cut(s)	579, 1095
BbsI	GAAGAC	2 cut(s)	483, 939
Bbv12I	GWGCWC	2 cut(s)	579, 1095
BbvI	GCAGC	4 cut(s)	100, 118, 133, 571
BccI	CCATC	1 cut(s)	656
BceAI	ACGGC	2 cut(s)	553, 1067
BciT130I	CCWGG	2 cut(s)	553, 1007
BclI	TGATCA	1 cut(s)	1021
BcoDI	GTCTC	5 cut(s)	64, 236, 519, 831, 964
BfaI	CTAG	5 cut(s)	117, 150, 693, 842, 863
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
BlsI	GCNGC	5 cut(s)	52, 115, 133, 148, 586
Bme1390I	CCNGG	2 cut(s)	553, 1007
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	365, 1166
BmiI	GGNNCC	5 cut(s)	126, 367, 525, 839, 1168
BmrFI	CCNGG	2 cut(s)	553, 1007
BmsI	GCATC	4 cut(s)	323, 795, 854, 1090
BmtI	GCTAGC	2 cut(s)	120, 866
BpiI	GAAGAC	2 cut(s)	483, 939
BplI	GAGNNNNNCTC	6 cut(s)	465, 497, 502, 534, 1100, 1132
BpmI	CTGGAG	1 cut(s)	1172
BpuEI	CTTGAG	3 cut(s)	277, 299, 1091
BsaAI	YACGTR	1 cut(s)	980
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	141, 324, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 374
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	553, 1007
BseDI	CCNNGG	3 cut(s)	141, 324, 832
BseGI	GGATG	2 cut(s)	289, 810
BseLI	CCNNNNNNNGG	2 cut(s)	161, 374
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	4 cut(s)	500, 585, 723, 1077
BseRI	GAGGAG	4 cut(s)	254, 255, 507, 1103
BseXI	GCAGC	4 cut(s)	100, 118, 133, 571
Bsh1236I	CGCG	2 cut(s)	79, 81
BshFI	GGCC	2 cut(s)	366, 1167
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	579, 1095
BsiHKCI	CYCGRG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	161, 374
BsmAI	GTCTC	5 cut(s)	64, 236, 519, 831, 964
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	366, 1167
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	579, 1095
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	366, 1167
BspCNI	CTCAG	4 cut(s)	501, 584, 724, 1078
BspFNI	CGCG	2 cut(s)	79, 81
BspLI	GGNNCC	5 cut(s)	126, 367, 525, 839, 1168
BspMAI	CTGCAG	1 cut(s)	160
BspOI	GCTAGC	2 cut(s)	120, 866
BspPI	GGATC	4 cut(s)	518, 531, 863, 1044
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	610
BsrGI	TGTACA	1 cut(s)	937
BssECI	CCNNGG	3 cut(s)	141, 324, 832
BssMI	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	553, 1007
Bst4CI	ACNGT	4 cut(s)	142, 247, 260, 500
Bst6I	CTCTTC	2 cut(s)	30, 391
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	937
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	5 cut(s)	21, 77, 118, 331, 864
BstDEI	CTNAG	8 cut(s)	63, 301, 509, 571, 732, 1012, 1086, 1096
BstDSI	CCRYGG	2 cut(s)	141, 832
BstEII	GGTNACC	1 cut(s)	698
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	289, 810
BstFNI	CGCG	2 cut(s)	79, 81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	6 cut(s)	182, 526, 871, 1024, 1039, 1138
BstMAI	GTCTC	5 cut(s)	64, 236, 519, 831, 964
BstMBI	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 155, 923
BstNI	CCWGG	2 cut(s)	553, 1007
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	551, 1005
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	79, 81
BstV1I	GCAGC	4 cut(s)	100, 118, 133, 571
BstV2I	GAAGAC	2 cut(s)	483, 939
BstX2I	RGATCY	2 cut(s)	523, 1036
BstYI	RGATCY	2 cut(s)	523, 1036
BsuRI	GGCC	2 cut(s)	366, 1167
BtgI	CCRYGG	2 cut(s)	141, 832
BtsCI	GGATG	2 cut(s)	289, 810
BtsIMutI	CAGTG	1 cut(s)	957
Cac8I	GCNNGC	5 cut(s)	21, 77, 118, 331, 864
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	365, 1166
CseI	GACGC	1 cut(s)	1136
Csp6I	GTAC	5 cut(s)	86, 168, 261, 938, 1111
CviAII	CATG	2 cut(s)	215, 752
CviQI	GTAC	5 cut(s)	86, 168, 261, 938, 1111
DdeI	CTNAG	8 cut(s)	63, 301, 509, 571, 732, 1012, 1086, 1096
DpnI	GATC	6 cut(s)	181, 525, 870, 1023, 1038, 1137
DpnII	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
Eam1104I	CTCTTC	2 cut(s)	30, 391
EarI	CTCTTC	2 cut(s)	30, 391
Ecl136II	GAGCTC	2 cut(s)	577, 1093
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	579, 1095
Eco31I	GGTCTC	1 cut(s)	519
Eco53kI	GAGCTC	2 cut(s)	577, 1093
Eco57I	CTGAAG	6 cut(s)	11, 321, 330, 367, 657, 933
Eco88I	CYCGRG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	698
EcoICRI	GAGCTC	2 cut(s)	577, 1093
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	1166
EcoO65I	GGTNACC	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	551, 1005
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	579, 1095
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	2 cut(s)	218, 755
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	2 cut(s)	214, 751
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
FokI	GGATG	2 cut(s)	296, 817
FriOI	GRGCYC	2 cut(s)	579, 1095
Fsp4HI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
FspBI	CTAG	5 cut(s)	117, 150, 693, 842, 863
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
GsuI	CTGGAG	1 cut(s)	1172
HaeIII	GGCC	2 cut(s)	366, 1167
HgaI	GACGC	1 cut(s)	1136
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	218, 755
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	5 cut(s)	192, 305, 341, 427, 955
HphI	GGTGA	1 cut(s)	1031
Hpy166II	GTNNAC	4 cut(s)	464, 643, 757, 938
Hpy188I	TCNGA	9 cut(s)	199, 310, 340, 346, 386, 510, 574, 733, 1087
Hpy8I	GTNNAC	4 cut(s)	464, 643, 757, 938
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	98, 341, 791, 1010
HpyCH4III	ACNGT	4 cut(s)	142, 247, 260, 500
HpyCH4IV	ACGT	3 cut(s)	84, 685, 979
HpyCH4V	TGCA	4 cut(s)	158, 587, 808, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 155, 923
HpyF3I	CTNAG	8 cut(s)	63, 301, 509, 571, 732, 1012, 1086, 1096
HpySE526I	ACGT	3 cut(s)	84, 685, 979
Hsp92II	CATG	2 cut(s)	218, 755
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	582, 837, 1090
Lsp1109I	GCAGC	4 cut(s)	100, 118, 133, 571
LweI	GCATC	4 cut(s)	323, 795, 854, 1090
MaeI	CTAG	5 cut(s)	117, 150, 693, 842, 863
MaeII	ACGT	3 cut(s)	84, 685, 979
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	6 cut(s)	181, 525, 870, 1023, 1038, 1137
MboI	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
MflI	RGATCY	2 cut(s)	523, 1036
MhlI	GDGCHC	2 cut(s)	579, 1095
MluCI	AATT	3 cut(s)	559, 678, 999
MlyI	GAGTC	2 cut(s)	314, 335
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	3 cut(s)	357, 681, 1130
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	553, 1007
MvaI	CCWGG	2 cut(s)	553, 1007
MvnI	CGCG	2 cut(s)	79, 81
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 155, 923
NdeII	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
NheI	GCTAGC	2 cut(s)	116, 862
NlaIII	CATG	2 cut(s)	218, 755
NlaIV	GGNNCC	5 cut(s)	126, 367, 525, 839, 1168
NmeAIII	GCCGAG	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	926
PfeI	GAWTC	3 cut(s)	192, 427, 955
PfoI	TCCNGGA	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	52, 115, 133, 148, 586
PleI	GAGTC	2 cut(s)	313, 335
PpsI	GAGTC	2 cut(s)	313, 335
Ppu21I	YACGTR	1 cut(s)	980
Psp124BI	GAGCTC	2 cut(s)	579, 1095
Psp6I	CCWGG	2 cut(s)	551, 1005
PspEI	GGTNACC	1 cut(s)	698
PspGI	CCWGG	2 cut(s)	551, 1005
PspN4I	GGNNCC	5 cut(s)	126, 367, 525, 839, 1168
PspPI	GGNCC	2 cut(s)	365, 1166
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	523, 1036
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	5 cut(s)	87, 169, 262, 939, 1112
RsaNI	GTAC	5 cut(s)	86, 168, 261, 938, 1111
SacI	GAGCTC	2 cut(s)	579, 1095
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	357, 681, 1130
SatI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
Sau3AI	GATC	6 cut(s)	179, 523, 868, 1021, 1036, 1135
Sau96I	GGNCC	2 cut(s)	365, 1166
SbfI	CCTGCAGG	1 cut(s)	160
SchI	GAGTC	2 cut(s)	314, 335
ScrFI	CCNGG	2 cut(s)	553, 1007
SdaI	CCTGCAGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	579, 1095
SfaNI	GCATC	4 cut(s)	323, 795, 854, 1090
SfcI	CTRYAG	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	4 cut(s)	267, 278, 292, 1070
SmoI	CTYRAG	4 cut(s)	267, 278, 292, 1070
Sse8387I	CCTGCAGG	1 cut(s)	160
Sse9I	AATT	3 cut(s)	559, 678, 999
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	5 cut(s)	117, 150, 693, 842, 863
SstI	GAGCTC	2 cut(s)	579, 1095
StyD4I	CCNGG	2 cut(s)	551, 1005
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	142, 247, 260, 500
TaiI	ACGT	3 cut(s)	87, 688, 982
TaqI	TCGA	4 cut(s)	268, 920, 929, 958
TasI	AATT	3 cut(s)	559, 678, 999
TatI	WGTACW	4 cut(s)	167, 260, 937, 1110
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	192, 427, 955
Tru1I	TTAA	3 cut(s)	357, 681, 1130
Tru9I	TTAA	3 cut(s)	357, 681, 1130
TscAI	CASTG	1 cut(s)	957
TseI	GCWGC	4 cut(s)	113, 131, 146, 584
TspDTI	ATGAA	4 cut(s)	22, 740, 809, 920
TspGWI	ACGGA	2 cut(s)	4, 469
TspRI	CASTG	1 cut(s)	957
XagI	CCTNNNNNAGG	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	267
XspI	CTAG	5 cut(s)	117, 150, 693, 842, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.