Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002248.1

Orthogroup ID

OG0005610

Physical Location & Seq

Genomic Coordinates Forward (+)

16023 .. 17846

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002248.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgacagctgacttcttatctgagcttggtgttatagttcatgttgaccaccccaacatagcaaaactgattgggtatggggttgaaggagggatgcaccttgttcttcatttgtctccccacgggagcctagcatctatactatatggcccgagagagatgctagattggggcatcagatataaagtagctttagggacggctaagggccttgtgtatcttcatgaggggtgccagagaagaattatccacaaagatattaaggcttctaatatattgctcacagaggattttgagcctcagatatctgatttcgggctagcaaagtggctaccagatcaatggactcaccacattgtatcaaaatttgaaggcacatttggctaccttccccctgagttcttcatgcatggcatagtagatgaaaaaactgatgtctatgcatacggggtactattattagagctcatcactggccggcaagctttggatagctcacataaaagccttgtcatgtgggccaaacctttactcatgcaaaataatgttaaagagctagctgatccaagccttgttgatgtctatgatgtggaacaaatgaaatgtcttgcctcgatagcttcgatgtgtgtacagcagtcttcagtgaatcgaccacaaatgagacagattgtccaggtcttagaaggtgatcaagagagtttggatcttgtaaaaaaacggcaaaagtctaaaaaacttgagaggacatattctgaggagctcttagatgcagacgagtacaactccaccaagtatttaactgatctggataagcgtctggagtttgttttaggcccctctaatgaagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

32.14

Weight (kDa)

5.56

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18910
fragaria_vesca	FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761
malus_domestica	MD13G1176500.v1.1 MD16G1178300.v1.1
prunus_persica	Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1
pyrus_communis	pycom13g15230 pycom16g14980
rosa_chinensis	RchiOBHm_Chr4g0420341
rosa_laevigata	RLG00000007771
rosa_multiflora	Rmu_sc0002248.1_g000002 Rmu_sc0016213.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362990
rosa_rugosa	Rorug04G0163500
rosa_samantha	Rh4AG224600 Rh4BG227600 Rh4CG239100 Rh4DG223100
rosa_wichuraiana	Rw4G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	231
AclWI	GGATC	2 cut(s)	557, 714
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	453, 633, 782
AgsI	TTSAA	2 cut(s)	86, 371
AhdI	GACNNNNNGTC	1 cut(s)	671
AjnI	CCWGG	1 cut(s)	675
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
Alw21I	GWGCWC	2 cut(s)	468, 765
Alw26I	GTCTC	2 cut(s)	120, 658
AlwI	GGATC	2 cut(s)	557, 714
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	5 cut(s)	148, 208, 475, 519, 835
ApoI	RAATTY	1 cut(s)	365
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AspS9I	GGNCC	4 cut(s)	149, 208, 519, 836
AsuHPI	GGTGA	2 cut(s)	341, 701
AsuNHI	GCTAGC	2 cut(s)	319, 556
AvaI	CYCGRG	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	468, 765
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	2 cut(s)	468, 765
BceAI	ACGGC	2 cut(s)	216, 737
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	677
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	120, 658
BfaI	CTAG	4 cut(s)	131, 164, 320, 557
Bme1390I	CCNGG	1 cut(s)	677
BmeRI	GACNNNNNGTC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	4 cut(s)	149, 208, 519, 836
BmiI	GGNNCC	3 cut(s)	128, 233, 838
BmrFI	CCNGG	1 cut(s)	677
BmsI	GCATC	5 cut(s)	84, 143, 150, 183, 760
BmtI	GCTAGC	2 cut(s)	323, 560
BpiI	GAAGAC	1 cut(s)	633
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	99
BseMII	CTCAG	4 cut(s)	12, 314, 387, 747
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	773
BshFI	GGCC	5 cut(s)	150, 210, 477, 521, 837
BshNI	GGYRCC	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	468, 765
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	120, 658
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	5 cut(s)	150, 210, 477, 521, 837
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	468, 765
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	337, 562, 691, 706, 805
BspANI	GGCC	5 cut(s)	150, 210, 477, 521, 837
BspCNI	CTCAG	4 cut(s)	13, 313, 388, 748
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	128, 233, 838
BspOI	GCTAGC	2 cut(s)	323, 560
BspPI	GGATC	2 cut(s)	557, 714
BspT107I	GGYRCC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	337, 562, 691, 706, 805
Bst2UI	CCWGG	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	4 cut(s)	321, 479, 483, 558
BstDEI	CTNAG	7 cut(s)	21, 204, 300, 396, 682, 756, 766
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	5 cut(s)	340, 565, 694, 709, 808
BstMAI	GTCTC	2 cut(s)	120, 658
BstMBI	GATC	5 cut(s)	337, 562, 691, 706, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 617
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	675
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	706
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	5 cut(s)	150, 210, 477, 521, 837
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	471, 651
Cac8I	GCNNGC	4 cut(s)	321, 479, 483, 558
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	4 cut(s)	149, 208, 519, 836
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	452, 632, 781
CviAII	CATG	6 cut(s)	41, 224, 406, 410, 514, 535
CviQI	GTAC	3 cut(s)	452, 632, 781
DdeI	CTNAG	7 cut(s)	21, 204, 300, 396, 682, 756, 766
DpnI	GATC	5 cut(s)	339, 564, 693, 708, 807
DpnII	GATC	5 cut(s)	337, 562, 691, 706, 805
DriI	GACNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	475
Eam1105I	GACNNNNNGTC	1 cut(s)	671
Ecl136II	GAGCTC	2 cut(s)	466, 763
Eco24I	GRGCYC	2 cut(s)	468, 765
Eco32I	GATATC	1 cut(s)	306
Eco53kI	GAGCTC	2 cut(s)	466, 763
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	151
EcoICRI	GAGCTC	2 cut(s)	466, 763
EcoO109I	RGGNCCY	2 cut(s)	208, 836
EcoRII	CCWGG	1 cut(s)	675
EcoRV	GATATC	1 cut(s)	306
EcoT22I	ATGCAT	2 cut(s)	411, 445
EcoT38I	GRGCYC	2 cut(s)	468, 765
FaeI	CATG	6 cut(s)	44, 227, 409, 413, 517, 538
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	6 cut(s)	40, 223, 405, 409, 513, 534
FbaI	TGATCA	1 cut(s)	691
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	2 cut(s)	468, 765
FspBI	CTAG	4 cut(s)	131, 164, 320, 557
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	5 cut(s)	150, 210, 477, 521, 837
HapII	CCGG	1 cut(s)	478
HgaI	GACGC	1 cut(s)	806
Hin1II	CATG	6 cut(s)	44, 227, 409, 413, 517, 538
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	2 cut(s)	346, 649
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	2 cut(s)	341, 701
Hpy166II	GTNNAC	2 cut(s)	46, 632
Hpy188I	TCNGA	5 cut(s)	22, 179, 303, 310, 757
Hpy188III	TCNNGA	4 cut(s)	224, 695, 809, 821
Hpy8I	GTNNAC	2 cut(s)	46, 632
HpyAV	CCTTC	4 cut(s)	80, 365, 398, 680
HpyCH4V	TGCA	5 cut(s)	97, 409, 443, 538, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 617
HpyF3I	CTNAG	7 cut(s)	21, 204, 300, 396, 682, 756, 766
Hsp92II	CATG	6 cut(s)	44, 227, 409, 413, 517, 538
KroI	GCCGGC	1 cut(s)	477
KroNI	GCCGGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	5 cut(s)	337, 562, 691, 706, 805
LmnI	GCTCC	2 cut(s)	126, 760
LpnPI	CCDG	9 cut(s)	248, 348, 408, 459, 491, 662, 689, 794, 806
LweI	GCATC	5 cut(s)	84, 143, 150, 183, 760
MaeI	CTAG	4 cut(s)	131, 164, 320, 557
MalI	GATC	5 cut(s)	339, 564, 693, 708, 807
MboI	GATC	5 cut(s)	337, 562, 691, 706, 805
MboII	GAAGA	5 cut(s)	98, 212, 252, 394, 633
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	468, 765
MluCI	AATT	2 cut(s)	243, 365
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	83, 220, 280, 309, 622, 738, 751, 850
Mph1103I	ATGCAT	2 cut(s)	411, 445
MroNI	GCCGGC	1 cut(s)	477
MseI	TTAA	3 cut(s)	261, 549, 800
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	2 cut(s)	381, 617
NaeI	GCCGGC	1 cut(s)	479
NdeII	GATC	5 cut(s)	337, 562, 691, 706, 805
NgoMIV	GCCGGC	1 cut(s)	477
NheI	GCTAGC	2 cut(s)	319, 556
NlaIII	CATG	6 cut(s)	44, 227, 409, 413, 517, 538
NlaIV	GGNNCC	3 cut(s)	128, 233, 838
NsiI	ATGCAT	2 cut(s)	411, 445
PagI	TCATGA	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PdiI	GCCGGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	2 cut(s)	468, 765
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	3 cut(s)	128, 233, 838
PspPI	GGNCC	4 cut(s)	149, 208, 519, 836
PsuI	RGATCY	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	3 cut(s)	453, 633, 782
RsaNI	GTAC	3 cut(s)	452, 632, 781
SacI	GAGCTC	2 cut(s)	468, 765
SaqAI	TTAA	3 cut(s)	261, 549, 800
Sau3AI	GATC	5 cut(s)	337, 562, 691, 706, 805
Sau96I	GGNCC	4 cut(s)	149, 208, 519, 836
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	468, 765
SfaNI	GCATC	5 cut(s)	84, 143, 150, 183, 760
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	2 cut(s)	243, 365
SspMI	CTAG	4 cut(s)	131, 164, 320, 557
SstI	GAGCTC	2 cut(s)	468, 765
StyD4I	CCNGG	1 cut(s)	675
TaqI	TCGA	3 cut(s)	614, 623, 652
TasI	AATT	2 cut(s)	243, 365
TatI	WGTACW	2 cut(s)	631, 780
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	3 cut(s)	261, 549, 800
Tru9I	TTAA	3 cut(s)	261, 549, 800
TscAI	CASTG	2 cut(s)	478, 651
TspDTI	ATGAA	6 cut(s)	29, 98, 212, 394, 438, 614
TspRI	CASTG	2 cut(s)	478, 651
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	4 cut(s)	131, 164, 320, 557
Zsp2I	ATGCAT	2 cut(s)	411, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.