Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005610

Physical Location & Seq

Genomic Coordinates Forward (+)

44035606 .. 44038849

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTAATCGCCTCCGTGCCTGCTCTTCAGTTCATAGCTTCTGGGTTTGCAGCTTTTGTCTCTAAGCACAATGGCTCGCGTGACGTCCCCAAAGAAAATCAAGAAGGACAGGCTGCTAGCTCGGCACCAGCTGCTACTACCGTGGCTGCTAGTCCTGCAGGAGGTAGTACAACAAGAAGATCAAGAGCTGGATTCTCTGACACCTTTTCAAACCATGATTTGAGAGCATTGAGATTGGAGGAGACGGTCATAGATGACTGTACTCCTCGAGATGTTCTTGAGGATGACTACTCAAGAAGCGTAGAATCTGAAGCATCAACTCCCAAGGCAAGCACTTCAGACTCGGAAGGAAAAGTCAATAATGGCCCCATTCGTGGTTTCTTCAGAATGTTGAAAAGAGGACAGCAACCCTTCCCTCCTGTGAAGATTCCAGCAAAACCAAAACTCACAAGACGGAAAAGTAAACGAATAAGAGAAGACCTCATTCCACCACTCAACAGTCCCGCTCTGAGGTCTCCTCTGGATCCTGAACTATACGGCTTCAAATCTTCCTGGAAGAATTACTCACTCTCAGAGCTCCAAGCTGCAACCAACAACTTTGGCAATGAGAACTTGATTGGGGAGGGGGCTATGCTGAAGTTTACAAGGGGACATTGGAAGATGGGCAGATTGTCGCAATTAAACGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

24.99

Weight (kDa)

9.74

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18910
fragaria_vesca	FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761
malus_domestica	MD13G1176500.v1.1 MD16G1178300.v1.1
prunus_persica	Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1
pyrus_communis	pycom13g15230 pycom16g14980
rosa_chinensis	RchiOBHm_Chr4g0420341
rosa_laevigata	RLG00000007771
rosa_multiflora	Rmu_sc0002248.1_g000002 Rmu_sc0016213.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362990
rosa_rugosa	Rorug04G0163500
rosa_samantha	Rh4AG224600 Rh4BG227600 Rh4CG239100 Rh4DG223100
rosa_wichuraiana	Rw4G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	506
AccII	CGCG	1 cut(s)	79
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	2 cut(s)	518, 531
AcuI	CTGAAG	5 cut(s)	11, 321, 330, 367, 656
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	169, 262
AfiI	CCNNNNNNNGG	3 cut(s)	161, 374, 510
AgsI	TTSAA	3 cut(s)	210, 394, 544
AjnI	CCWGG	1 cut(s)	551
AluBI	AGCT	7 cut(s)	38, 53, 120, 131, 188, 577, 584
AluI	AGCT	7 cut(s)	38, 53, 120, 131, 188, 577, 584
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	3 cut(s)	64, 236, 519
AlwI	GGATC	2 cut(s)	518, 531
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	5 cut(s)	50, 113, 131, 146, 584
AspS9I	GGNCC	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	5 cut(s)	62, 100, 118, 133, 571
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	64, 236, 519
BfaI	CTAG	2 cut(s)	117, 150
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
BlsI	GCNGC	5 cut(s)	52, 115, 133, 148, 586
Bme1390I	CCNGG	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	3 cut(s)	126, 367, 525
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	1 cut(s)	323
BmtI	GCTAGC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	483
BplI	GAGNNNNNCTC	4 cut(s)	465, 497, 502, 534
BpuEI	CTTGAG	2 cut(s)	277, 299
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	141, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 374, 510
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	553
BseDI	CCNNGG	2 cut(s)	141, 324
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	161, 374, 510
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	2 cut(s)	500, 585
BseRI	GAGGAG	3 cut(s)	254, 255, 507
BseXI	GCAGC	5 cut(s)	62, 100, 118, 133, 571
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	267
BslFI	GGGAC	3 cut(s)	71, 486, 663
BslI	CCNNNNNNNGG	3 cut(s)	161, 374, 510
BsmAI	GTCTC	3 cut(s)	64, 236, 519
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	3 cut(s)	71, 486, 663
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	179, 523
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	501, 584
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	3 cut(s)	126, 367, 525
BspMAI	CTGCAG	1 cut(s)	160
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	518, 531
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	519
BsrBI	CCGCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	141, 324
BssMI	GATC	2 cut(s)	179, 523
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	553
Bst4CI	ACNGT	4 cut(s)	142, 247, 260, 500
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	4 cut(s)	21, 77, 118, 331
BstDEI	CTNAG	3 cut(s)	63, 509, 571
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	182, 526
BstMAI	GTCTC	3 cut(s)	64, 236, 519
BstMBI	GATC	2 cut(s)	179, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 155
BstNI	CCWGG	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	551
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	5 cut(s)	62, 100, 118, 133, 571
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	21, 77, 118, 331
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	168, 261
CviAII	CATG	1 cut(s)	215
CviQI	GTAC	2 cut(s)	168, 261
DdeI	CTNAG	3 cut(s)	63, 509, 571
DpnI	GATC	2 cut(s)	181, 525
DpnII	GATC	2 cut(s)	179, 523
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	5 cut(s)	11, 321, 330, 367, 656
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	577
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	1 cut(s)	218
FaiI	YATR	5 cut(s)	35, 216, 251, 535, 632
FaqI	GGGAC	3 cut(s)	71, 486, 663
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	511
Fnu4HI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
FspBI	CTAG	2 cut(s)	117, 150
GluI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
HaeIII	GGCC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	4 cut(s)	192, 305, 341, 427
Hpy166II	GTNNAC	2 cut(s)	464, 642
Hpy188I	TCNGA	7 cut(s)	199, 310, 340, 346, 386, 510, 574
Hpy188III	TCNNGA	7 cut(s)	101, 183, 269, 278, 294, 521, 527
Hpy8I	GTNNAC	2 cut(s)	464, 642
HpyAV	CCTTC	3 cut(s)	98, 341, 421
HpyCH4III	ACNGT	4 cut(s)	142, 247, 260, 500
HpyCH4IV	ACGT	2 cut(s)	84, 684
HpyCH4V	TGCA	3 cut(s)	50, 158, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 155
HpyF3I	CTNAG	3 cut(s)	63, 509, 571
HpySE526I	ACGT	2 cut(s)	84, 684
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	179, 523
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	582
Lsp1109I	GCAGC	5 cut(s)	62, 100, 118, 133, 571
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	117, 150
MaeII	ACGT	2 cut(s)	84, 684
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	2 cut(s)	181, 525
MbiI	CCGCTC	1 cut(s)	506
MboI	GATC	2 cut(s)	179, 523
MboII	GAAGA	8 cut(s)	17, 189, 373, 436, 488, 540, 568, 670
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	2 cut(s)	559, 677
MlyI	GAGTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	553
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 155
NdeII	GATC	2 cut(s)	179, 523
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	3 cut(s)	126, 367, 525
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	192, 305, 427
PfoI	TCCNGGA	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	52, 115, 133, 148, 586
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	551
PspN4I	GGNNCC	3 cut(s)	126, 367, 525
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	169, 262
RsaNI	GTAC	2 cut(s)	168, 261
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	5 cut(s)	51, 114, 132, 147, 585
Sau3AI	GATC	2 cut(s)	179, 523
Sau96I	GGNCC	1 cut(s)	365
SbfI	CCTGCAGG	1 cut(s)	160
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	553
SdaI	CCTGCAGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	3 cut(s)	267, 278, 292
SmoI	CTYRAG	3 cut(s)	267, 278, 292
Sse8387I	CCTGCAGG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	559, 677
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	117, 150
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	142, 247, 260, 500
TaiI	ACGT	2 cut(s)	87, 687
TaqI	TCGA	1 cut(s)	268
TasI	AATT	2 cut(s)	559, 677
TatI	WGTACW	2 cut(s)	167, 260
TfiI	GAWTC	3 cut(s)	192, 305, 427
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	5 cut(s)	50, 113, 131, 146, 584
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	2 cut(s)	4, 469
XagI	CCTNNNNNAGG	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	267
XspI	CTAG	2 cut(s)	117, 150
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.