pycom13g15330

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
11169559 .. 11169989
431 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGGACCATTCCCAGTCCCACCCGATTCCAAAAGAAGGCAACCCGTCACCGCCGCAACCACCACCTCTCCACGCAGACGTAGAAGACGACGACGAGAATGTAAAACAGCTCAACCAATGCTCTGTTCTCTACCTCTCCTTACAGGATTGCCTTGTCAAGACTGACAGGAATTGGAAATCTTGTCAACCAGAAGTTCAGGCCTTGAAGGCTTGCAATGAGAGGAGGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.78

Weight (kDa)

5.83

Isoelectric Point (pI)

66.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 53
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 13
BshFI GGCC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 200
BspACI CCGC 2 cut(s) 50, 53
BspANI GGCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 3 cut(s) 109, 200, 209
CviKI_1 RGCY 3 cut(s) 109, 200, 209
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 2 cut(s) 29, 199
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 78
LpnPI CCDG 5 cut(s) 26, 128, 151, 182, 201
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 45
MboII GAAGA 1 cut(s) 95
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 75, 143, 213, 216
MwoI GCNNNNNNNGC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 45
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 4
SatI GCNGC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 4
SetI ASST 4 cut(s) 67, 81, 111, 135
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 169
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 2 cut(s) 50, 53
StuI AGGCCT 1 cut(s) 200
TaiI ACGT 1 cut(s) 81
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 25
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.