pycom13g15800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009100
Physical Location & Seq
Forward (+)
11571762 .. 11572931
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15800.1

Sequence Viewer

Length: 1170 bp
ATGGTTCTTATTCTTTTAAGCTTCAAGTTCATCAGGATTTTGTGGGGTTGTACAATTTTACTGTCATTCTACTTTTTAGGCATTTTGAGGGTCTTAGATTTTCACCAGCTGGGTTTTCTGATCGATCGAGAGCTGCGAAAGATTCCGGTAAGGTTTGTAAAGGGCACGGCGAAGTTGCCTGAGCTGCGTACTTGCGAAGAGTCCGATTTTGGGAGAGAGATTTGGGCAGGAAGGTGGACTAGGCATGGGAAGAATGATGGTTGTGAAATTAGTAATGACGGTCGGTATCGTTGCCTATCCCGGGATTTTCCTTGCCAAAGTCCATGGTGCAATGGCTCTTTGGGGGTGTTGGAGAGTAATGGTTGGGTTTACTCCGCACATTGTTCGTTTAGATTGTTTTCGGCTAATGATGCTTGGCATTGCTTGAGCAACCGGTGGATTTTCTTTTGGGGCGACTCCAATCACGTAGACTCAATACGCAACACTCTCAACTTTATATTGGATCGGCCTGATATACCTTCAGTTCCTAGACGGTTTGATAGGAACTTTTCAAATCCAAAAGACCCTTCTCAGACCGTTCGAATTACAAGCATCTTCAATGGTCATTGGAACGAAACGCAAAACTACCAAGGGTTGAATTCTTTGAAAGATGAAGGGTTTAGGAACTTGTTAAAGAAATACTTCTCAGAAGAGACAGTTCCAGATACTATAATCATGAACTCTGGATTACACGACGGTTATTACTGGCGCAACATAAGATCATTCTCTATTGGTGCAAGCCATGCAGCAACATTTTGGGCGGAAATCATGGAGTCGATAAGGCAGAGAGGATTGACGGTGCCAAAGGTCTTTTACCGGACAACAATAGCCACTGGTGGGTACGCAAGAACTCTGGGATTTAACCCGAGTAAAATGGAGGCATTTAATTCAGTATTGTTAGATAAGTTGAAGGAAGCCGGGCTCCTCTCTGGTGTAATTGACAATTTCGACATGACCTTCCCGTGGCATTATGATAATCGGTGCAATGATGGGGTGCACTATGGCCGAGCTCCCTTGAAGATGAAGTGGAGAGATGGCGAAATTGGGCACTATTATTTTGTCGACCTTATGTTGGATCATATACTGCTGAATGCACTCTGTGCAGGAAGGCAAGCTTCTACAAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

45.05

Weight (kDa)

8.74

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 838
AccI GTMKAC 2 cut(s) 468, 1101
AciI CCGC 2 cut(s) 375, 800
AclWI GGATC 2 cut(s) 510, 1122
AcoI YGGCCR 1 cut(s) 1042
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 504
AdeI CACNNNGTG 1 cut(s) 1139
AfaI GTAC 3 cut(s) 52, 190, 881
AfiI CCNNNNNNNGG 5 cut(s) 210, 301, 876, 1002, 1111
AflIII ACRYGT 1 cut(s) 1164
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 7 cut(s) 25, 552, 598, 637, 646, 949, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 550, 582
AluBI AGCT 6 cut(s) 21, 109, 133, 184, 1049, 1154
AluI AGCT 6 cut(s) 21, 109, 133, 184, 1049, 1154
Alw21I GWGCWC 2 cut(s) 1038, 1051
Alw26I GTCTC 1 cut(s) 686
Alw44I GTGCAC 1 cut(s) 1034
AlwI GGATC 2 cut(s) 510, 1122
Ama87I CYCGRG 2 cut(s) 300, 904
AoxI GGCC 2 cut(s) 506, 1042
ApaLI GTGCAC 1 cut(s) 1034
ApeKI GCWGC 3 cut(s) 133, 184, 785
ApoI RAATTY 1 cut(s) 637
AsiGI ACCGGT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 680
AspLEI GCGC 1 cut(s) 750
AsuC2I CCSGG 3 cut(s) 301, 302, 958
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 580
AvaI CYCGRG 2 cut(s) 300, 904
BaeGI GKGCMC 3 cut(s) 167, 1038, 1089
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 2 cut(s) 963, 1051
Bbv12I GWGCWC 2 cut(s) 1038, 1051
BbvI GCAGC 3 cut(s) 120, 171, 797
BccI CCATC 3 cut(s) 251, 1022, 1067
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BcnI CCSGG 3 cut(s) 301, 302, 958
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 240, 528
BisI GCNGC 3 cut(s) 134, 185, 786
BlsI GCNGC 3 cut(s) 135, 186, 787
Bme1390I CCNGG 3 cut(s) 301, 302, 958
BmeT110I CYCGRG 2 cut(s) 300, 904
BmiI GGNNCC 2 cut(s) 840, 962
BmrFI CCNGG 3 cut(s) 301, 302, 958
BmsI GCATC 2 cut(s) 400, 600
Bpu10I CCTNAGC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 3 cut(s) 301, 302, 958
Bsa29I ATCGAT 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 466
BsaJI CCNNGG 4 cut(s) 300, 323, 628, 1001
BsaWI WCCGGW 3 cut(s) 145, 432, 855
Bsc4I CCNNNNNNNGG 5 cut(s) 210, 301, 876, 1002, 1111
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 749, 877
Bse3DI GCAATG 3 cut(s) 337, 418, 1030
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 4 cut(s) 300, 323, 628, 1001
BseLI CCNNNNNNNGG 5 cut(s) 210, 301, 876, 1002, 1111
BseMI GCAATG 3 cut(s) 337, 418, 1030
BseMII CTCAG 3 cut(s) 171, 584, 699
BseNI ACTGG 2 cut(s) 749, 877
BseRI GAGGAG 1 cut(s) 953
BseSI GKGCMC 3 cut(s) 167, 1038, 1089
BseXI GCAGC 3 cut(s) 120, 171, 797
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 1161
Bsh1285I CGRYCG 2 cut(s) 127, 283
BshFI GGCC 2 cut(s) 508, 1044
BshNI GGYRCC 1 cut(s) 838
BshTI ACCGGT 1 cut(s) 432
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 127, 283
BsiHKAI GWGCWC 2 cut(s) 1038, 1051
BsiHKCI CYCGRG 2 cut(s) 300, 904
BsiSI CCGG 5 cut(s) 146, 301, 433, 856, 957
BslI CCNNNNNNNGG 5 cut(s) 210, 301, 876, 1002, 1111
BsmAI GTCTC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 2 cut(s) 508, 1044
BsoBI CYCGRG 2 cut(s) 300, 904
Bsp119I TTCGAA 1 cut(s) 580
Bsp1286I GDGCHC 5 cut(s) 167, 963, 1038, 1051, 1089
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 5 cut(s) 120, 124, 502, 758, 1114
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 2 cut(s) 375, 800
BspANI GGCC 2 cut(s) 508, 1044
BspCNI CTCAG 3 cut(s) 172, 583, 698
BspDI ATCGAT 1 cut(s) 123
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 2 cut(s) 840, 962
BspPI GGATC 2 cut(s) 510, 1122
BspT104I TTCGAA 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 838
BsrDI GCAATG 3 cut(s) 337, 418, 1030
BsrFI RCCGGY 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 2 cut(s) 749, 877
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 4 cut(s) 300, 323, 628, 1001
BssMI GATC 5 cut(s) 120, 124, 502, 758, 1114
BssT1I CCWWGG 2 cut(s) 323, 628
Bst4CI ACNGT 7 cut(s) 63, 281, 534, 577, 697, 737, 838
Bst6I CTCTTC 2 cut(s) 192, 684
BstAPI GCANNNNNTGC 2 cut(s) 782, 1139
BstAUI TGTACA 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 466
BstBI TTCGAA 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 778, 1152
BstDEI CTNAG 4 cut(s) 94, 180, 570, 685
BstDSI CCRYGG 2 cut(s) 323, 1001
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 5 cut(s) 123, 127, 505, 761, 1117
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 5 cut(s) 120, 124, 502, 758, 1114
BstMCI CGRYCG 2 cut(s) 127, 283
BstMWI GCNNNNNNNGC 4 cut(s) 184, 410, 782, 1139
BstNSI RCATGY 1 cut(s) 1168
BstSCI CCNGG 3 cut(s) 299, 300, 956
BstSLI GKGCMC 3 cut(s) 167, 1038, 1089
BstV1I GCAGC 3 cut(s) 120, 171, 797
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 2 cut(s) 508, 1044
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 2 cut(s) 323, 1001
BtsIMutI CAGTG 1 cut(s) 870
Cac8I GCNNGC 2 cut(s) 778, 1152
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 750
Cfr10I RCCGGY 1 cut(s) 432
Cfr9I CCCGGG 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 3 cut(s) 51, 189, 880
CspAI ACCGGT 1 cut(s) 432
CviAII CATG 7 cut(s) 245, 324, 715, 782, 808, 991, 1165
CviQI GTAC 3 cut(s) 51, 189, 880
DdeI CTNAG 4 cut(s) 94, 180, 570, 685
DpnI GATC 5 cut(s) 122, 126, 504, 760, 1116
DpnII GATC 5 cut(s) 120, 124, 502, 758, 1114
DraIII CACNNNGTG 1 cut(s) 1139
EaeI YGGCCR 1 cut(s) 1042
Eam1104I CTCTTC 2 cut(s) 192, 684
EarI CTCTTC 2 cut(s) 192, 684
EciI GGCGGA 1 cut(s) 815
Ecl136II GAGCTC 1 cut(s) 1049
Eco130I CCWWGG 2 cut(s) 323, 628
Eco24I GRGCYC 2 cut(s) 963, 1051
Eco53kI GAGCTC 1 cut(s) 1049
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 2 cut(s) 300, 904
EcoICRI GAGCTC 1 cut(s) 1049
EcoRI GAATTC 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 323, 628
EcoT38I GRGCYC 2 cut(s) 963, 1051
ErhI CCWWGG 2 cut(s) 323, 628
FaeI CATG 7 cut(s) 248, 327, 718, 785, 811, 994, 1168
FalI AAGNNNNNCTT 4 cut(s) 665, 697, 1138, 1170
FatI CATG 7 cut(s) 244, 323, 714, 781, 807, 990, 1164
FblI GTMKAC 2 cut(s) 468, 1101
Fnu4HI GCNGC 3 cut(s) 134, 185, 786
FriOI GRGCYC 2 cut(s) 963, 1051
Fsp4HI GCNGC 3 cut(s) 134, 185, 786
FspBI CTAG 2 cut(s) 240, 528
GlaI GCGC 1 cut(s) 749
GluI GCNGC 3 cut(s) 134, 185, 786
GsaI CCCAGC 1 cut(s) 113
HaeIII GGCC 2 cut(s) 508, 1044
HapII CCGG 5 cut(s) 146, 301, 433, 856, 957
HhaI GCGC 1 cut(s) 750
Hin1II CATG 7 cut(s) 248, 327, 718, 785, 811, 994, 1168
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 2 cut(s) 19, 1152
HinfI GANTC 5 cut(s) 142, 200, 455, 470, 812
HpaII CCGG 5 cut(s) 146, 301, 433, 856, 957
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 5 cut(s) 237, 370, 469, 1036, 1102
Hpy188I TCNGA 4 cut(s) 120, 205, 573, 688
Hpy188III TCNNGA 5 cut(s) 34, 128, 701, 715, 723
Hpy8I GTNNAC 5 cut(s) 237, 370, 469, 1036, 1102
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 7 cut(s) 225, 528, 576, 647, 943, 1006, 1140
HpyCH4III ACNGT 7 cut(s) 63, 281, 534, 577, 697, 737, 838
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 7 cut(s) 330, 776, 785, 1023, 1036, 1133, 1142
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 410, 782, 1139
HpyF3I CTNAG 4 cut(s) 94, 180, 570, 685
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 7 cut(s) 248, 327, 718, 785, 811, 994, 1168
HspAI GCGC 1 cut(s) 748
Kzo9I GATC 5 cut(s) 120, 124, 502, 758, 1114
LmnI GCTCC 2 cut(s) 966, 1054
Lsp1109I GCAGC 3 cut(s) 120, 171, 797
LweI GCATC 2 cut(s) 400, 600
MaeI CTAG 2 cut(s) 240, 528
MaeII ACGT 1 cut(s) 465
MalI GATC 5 cut(s) 122, 126, 504, 760, 1116
MboI GATC 5 cut(s) 120, 124, 502, 758, 1114
MboII GAAGA 5 cut(s) 209, 262, 586, 701, 1069
MhlI GDGCHC 5 cut(s) 167, 963, 1038, 1051, 1089
MluCI AATT 8 cut(s) 54, 267, 582, 637, 925, 975, 982, 1080
MlyI GAGTC 4 cut(s) 209, 449, 464, 821
MmeI TCCRAC 2 cut(s) 330, 1092
MnlI CCTC 4 cut(s) 81, 821, 910, 974
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 4 cut(s) 17, 671, 900, 924
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 5 cut(s) 146, 301, 433, 856, 957
MspR9I CCNGG 3 cut(s) 301, 302, 958
Mva1269I GAATGC 1 cut(s) 1135
MwoI GCNNNNNNNGC 4 cut(s) 184, 410, 782, 1139
NciI CCSGG 3 cut(s) 301, 302, 958
NcoI CCATGG 1 cut(s) 323
NdeII GATC 5 cut(s) 120, 124, 502, 758, 1114
NlaIII CATG 7 cut(s) 248, 327, 718, 785, 811, 994, 1168
NlaIV GGNNCC 2 cut(s) 840, 962
NmeAIII GCCGAG 1 cut(s) 1070
NspI RCATGY 1 cut(s) 1168
NspV TTCGAA 1 cut(s) 580
PagI TCATGA 1 cut(s) 714
PciI ACATGT 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 1 cut(s) 1135
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 3 cut(s) 135, 186, 787
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 4 cut(s) 208, 449, 464, 820
PpsI GAGTC 4 cut(s) 208, 449, 464, 820
Ppu21I YACGTR 1 cut(s) 466
PscI ACATGT 1 cut(s) 1164
Psp124BI GAGCTC 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 840, 962
PvuI CGATCG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 3 cut(s) 52, 190, 881
RsaNI GTAC 3 cut(s) 51, 189, 880
SacI GAGCTC 1 cut(s) 1051
SalI GTCGAC 1 cut(s) 1100
SaqAI TTAA 4 cut(s) 17, 671, 900, 924
SatI GCNGC 3 cut(s) 134, 185, 786
Sau3AI GATC 5 cut(s) 120, 124, 502, 758, 1114
SchI GAGTC 4 cut(s) 209, 449, 464, 821
ScrFI CCNGG 3 cut(s) 301, 302, 958
SduI GDGCHC 5 cut(s) 167, 963, 1038, 1051, 1089
SfaNI GCATC 2 cut(s) 400, 600
SfuI TTCGAA 1 cut(s) 580
SmaI CCCGGG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 8 cut(s) 54, 267, 582, 637, 925, 975, 982, 1080
SsiI CCGC 2 cut(s) 375, 800
SspMI CTAG 2 cut(s) 240, 528
SstI GAGCTC 1 cut(s) 1051
StyD4I CCNGG 3 cut(s) 299, 300, 956
StyI CCWWGG 2 cut(s) 323, 628
TaaI ACNGT 7 cut(s) 63, 281, 534, 577, 697, 737, 838
TaiI ACGT 1 cut(s) 468
TaqI TCGA 6 cut(s) 123, 127, 580, 815, 987, 1101
TasI AATT 8 cut(s) 54, 267, 582, 637, 925, 975, 982, 1080
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 4 cut(s) 17, 671, 900, 924
Tru9I TTAA 4 cut(s) 17, 671, 900, 924
TscAI CASTG 1 cut(s) 877
TseI GCWGC 3 cut(s) 133, 184, 785
TspDTI ATGAA 4 cut(s) 19, 666, 731, 1076
TspMI CCCGGG 1 cut(s) 300
TspRI CASTG 1 cut(s) 877
VneI GTGCAC 1 cut(s) 1034
XapI RAATTY 1 cut(s) 637
XceI RCATGY 1 cut(s) 1168
XmaI CCCGGG 1 cut(s) 300
XmiI GTMKAC 2 cut(s) 468, 1101
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 240, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.