Rmu_sc0009909.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009909.1
Physical Location & Seq
Reverse (-)
29611 .. 31455
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009909.1_g000005.1.cds

Sequence Viewer

Length: 1845 bp
atggatgcaacaactatgaagaacttggttgaagctaccaagtctcagcaaggttatttcactacaaaggttagtacttttgctaataatcttgctcagaaccatgagaatgttgaagttagcacagcccccagtgtagttaatcagactcagaaagaaaccgactcgactcagttgaaaccagagattgattctcagaacccagtgaatgatagcacagcccccattgtagttaatcagacccagaaagaaaccaatttgacccagaaagaaacaaacttagcccagaaagaaaccagcttgacccagttggagcccgagattgattctcagaacccagtgaatgatgcccagtatgagaccctttctgatcagaaatcaactggggtttctgtgattcctgcaatgttgaactgggtttctgctaatttagagcctgatgtgacaaagagtctcctagctaaatggttagcaccaggaggagagccttgtagagatgctaggactgttggaatagcaattcctggtttggatggtaaggatctgcttgagttgtcagctggtgaaatctatgagtttgggtttcaagctttagatgagaataagaagcctaggtgtctaggtggggattactttgagacagatctttctggggagtcatggaaatctaggcctgttgtgaaagattttggtaatgggtcttattcgctttcgcttcaagttcatccagactttgtgggatcttacaatcttactataatcctactatttaggcattttgagggtcttaaattctcacctacccggtttgcatacgatagagagcttcgcagaattccaatcaggttttacaaaggctcggctcaattgccagagctacaagtttgcaaagaatctgattttggaagagatgtttggactggaaggtggactaggcatggtaagaatgacgagtgtgagattagtcaggatggtcgatacaggtgcttatccccaagttttccttgccagagtccttggtgtaatggttcattggggtctttggaaagtaatggttgggtttactccacacattgttcgttcagattgttttcagctgattctgcttggaattgcttgaataaccggtggcttttcttctggggcgattccaatcacgttgattcgatacgaaacattctcaactttatcttggatatgcctgaagtgctttcagttcctagacggtttgatatgcactttacaaacccgaaagacccttcacagaaggttcgaattacaagcctttttaatggtcattggaatgaaacacagaattaccagggtttgaattccttgaaagatgaaggattcaggaatttgatcaagaagtatttctcagaagaaaaagttccagatactataatcatgaactcaggcttacatgatggcgtattttggtccaacataagatctttttctgctggggcaagctatgcagcatcattttgggtggaagttatggattcaataaggcagagaggtttggtggtgccaaaagtcttttaccggaccacaatagccactggagggtatgcgcgaactctggcgtttaatcctaataagatggagacattcaattggatactcatagagaaattgaagcaagctggtatccttactggtgtgattgacaattttgacatgaccttcccgtggcattttgataaccgttgcaatgatggagtgcactatggccgagctcctgcaaaggcaaagtggagggatggccttattggacaccactattttgtggaccttatgctggatcatatagtgctgaatgtattatgtacaaccagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

614

Amino Acids

69.6

Weight (kDa)

5.92

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1531
AccII CGCG 1 cut(s) 1579
AclWI GGATC 3 cut(s) 549, 748, 1815
AcoI YGGCCR 1 cut(s) 1735
AcsI RAATTY 4 cut(s) 791, 834, 1330, 1357
AcuI CTGAAG 1 cut(s) 1224
AfaI GTAC 2 cut(s) 76, 1834
AfiI CCNNNNNNNGG 3 cut(s) 1569, 1695, 1804
AgeI ACCGGT 1 cut(s) 1125
AhdI GACNNNNNGTC 1 cut(s) 450
AjnI CCWGG 3 cut(s) 475, 523, 1320
AjuI GAANNNNNNNTTGG 4 cut(s) 885, 898, 917, 930
Alw21I GWGCWC 2 cut(s) 1731, 1744
Alw26I GTCTC 5 cut(s) 48, 353, 458, 632, 1604
Alw44I GTGCAC 1 cut(s) 1727
AlwI GGATC 3 cut(s) 549, 748, 1815
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 3 cut(s) 671, 1735, 1768
ApaLI GTGCAC 1 cut(s) 1727
ApeKI GCWGC 1 cut(s) 1478
ApoI RAATTY 4 cut(s) 791, 834, 1330, 1357
AsiGI ACCGGT 1 cut(s) 1125
Asp700I GAANNNNTTC 2 cut(s) 1373, 1389
AspA2I CCTAGG 1 cut(s) 611
AspLEI GCGC 1 cut(s) 1579
AspS9I GGNCC 3 cut(s) 1440, 1551, 1795
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 2 cut(s) 575, 789
AsuII TTCGAA 1 cut(s) 1273
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 3 cut(s) 1440, 1551, 1795
AvrII CCTAGG 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 1731
BanI GGYRCC 1 cut(s) 1531
BanII GRGCYC 2 cut(s) 318, 1744
Bbv12I GWGCWC 2 cut(s) 1731, 1744
BbvI GCAGC 1 cut(s) 1490
BccI CCATC 6 cut(s) 527, 965, 1421, 1600, 1715, 1760
BcgI CGANNNNNNTGC 2 cut(s) 966, 1000
BciT130I CCWGG 3 cut(s) 477, 525, 1322
BciVI GTATCC 2 cut(s) 1617, 1664
BclI TGATCA 2 cut(s) 370, 1362
BcnI CCSGG 1 cut(s) 805
BcoDI GTCTC 5 cut(s) 48, 353, 458, 632, 1604
BfaI CTAG 7 cut(s) 458, 501, 612, 620, 669, 933, 1221
BfuI GTATCC 2 cut(s) 1617, 1664
BglII AGATCT 2 cut(s) 643, 1451
BisI GCNGC 1 cut(s) 1479
BlnI CCTAGG 1 cut(s) 611
BlsI GCNGC 1 cut(s) 1480
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 477, 525, 805, 1322
Bme18I GGWCC 3 cut(s) 1440, 1551, 1795
BmeRI GACNNNNNGTC 1 cut(s) 450
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 1440, 1551, 1795
BmiI GGNNCC 2 cut(s) 315, 1533
BmrFI CCNGG 4 cut(s) 477, 525, 805, 1322
BmrI ACTGGG 7 cut(s) 126, 197, 301, 332, 346, 393, 424
BmsI GCATC 3 cut(s) 337, 487, 1490
BmuI ACTGGG 7 cut(s) 126, 197, 301, 332, 346, 393, 424
BpmI CTGGAG 1 cut(s) 1587
Bpu14I TTCGAA 1 cut(s) 1273
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 1152
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 611, 1016, 1321, 1694
BsaWI WCCGGW 2 cut(s) 1125, 1548
Bsc4I CCNNNNNNNGG 3 cut(s) 1569, 1695, 1804
Bse118I RCCGGY 1 cut(s) 1125
Bse3DI GCAATG 2 cut(s) 411, 1723
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 3 cut(s) 477, 525, 1322
BseDI CCNNGG 4 cut(s) 611, 1016, 1321, 1694
BseGI GGATG 5 cut(s) 10, 538, 724, 976, 1771
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 3 cut(s) 1569, 1695, 1804
BseMI GCAATG 2 cut(s) 411, 1723
BseMII CTCAG 8 cut(s) 59, 110, 164, 185, 209, 344, 1392, 1428
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 1731
BseXI GCAGC 1 cut(s) 1490
BseYI CCCAGC 1 cut(s) 1463
Bsh1236I CGCG 1 cut(s) 1579
BshFI GGCC 3 cut(s) 673, 1737, 1770
BshNI GGYRCC 1 cut(s) 1531
BshTI ACCGGT 1 cut(s) 1125
BsiHKAI GWGCWC 2 cut(s) 1731, 1744
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 3 cut(s) 805, 1126, 1549
BslI CCNNNNNNNGG 3 cut(s) 1569, 1695, 1804
BsmAI GTCTC 5 cut(s) 48, 353, 458, 632, 1604
BsnI GGCC 3 cut(s) 673, 1737, 1770
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 1273
Bsp1286I GDGCHC 3 cut(s) 318, 1731, 1744
Bsp1407I TGTACA 1 cut(s) 1832
Bsp143I GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
BspANI GGCC 3 cut(s) 673, 1737, 1770
BspCNI CTCAG 8 cut(s) 58, 109, 163, 184, 208, 343, 1391, 1427
BspFNI CGCG 1 cut(s) 1579
BspHI TCATGA 1 cut(s) 1407
BspLI GGNNCC 2 cut(s) 315, 1533
BspPI GGATC 3 cut(s) 549, 748, 1815
BspT104I TTCGAA 1 cut(s) 1273
BspT107I GGYRCC 1 cut(s) 1531
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 2 cut(s) 411, 1723
BsrFI RCCGGY 1 cut(s) 1125
BsrGI TGTACA 1 cut(s) 1832
BssAI RCCGGY 1 cut(s) 1125
BssECI CCNNGG 4 cut(s) 611, 1016, 1321, 1694
BssMI GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
BssT1I CCWWGG 2 cut(s) 611, 1016
Bst2UI CCWGG 3 cut(s) 477, 525, 1322
Bst4CI ACNGT 3 cut(s) 508, 1227, 1712
Bst6I CTCTTC 1 cut(s) 901
BstAPI GCANNNNNTGC 1 cut(s) 1475
BstAUI TGTACA 1 cut(s) 1832
BstBI TTCGAA 1 cut(s) 1273
BstC8I GCNNGC 2 cut(s) 1471, 1647
BstDEI CTNAG 9 cut(s) 45, 96, 150, 171, 195, 280, 330, 1378, 1414
BstDSI CCRYGG 1 cut(s) 1694
BstF5I GGATG 5 cut(s) 10, 538, 724, 976, 1771
BstFNI CGCG 1 cut(s) 1579
BstHHI GCGC 1 cut(s) 1579
BstKTI GATC 7 cut(s) 373, 544, 646, 743, 1365, 1454, 1810
BstMAI GTCTC 5 cut(s) 48, 353, 458, 632, 1604
BstMBI GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
BstMWI GCNNNNNNNGC 3 cut(s) 1103, 1207, 1475
BstNI CCWGG 3 cut(s) 477, 525, 1322
BstSCI CCNGG 4 cut(s) 475, 523, 803, 1320
BstSLI GKGCMC 1 cut(s) 1731
BstUI CGCG 1 cut(s) 1579
BstV1I GCAGC 1 cut(s) 1490
BstX2I RGATCY 4 cut(s) 541, 643, 740, 1451
BstYI RGATCY 4 cut(s) 541, 643, 740, 1451
BsuI GTATCC 2 cut(s) 1617, 1664
BsuRI GGCC 3 cut(s) 673, 1737, 1770
BtgI CCRYGG 1 cut(s) 1694
BtsCI GGATG 5 cut(s) 10, 538, 724, 976, 1771
BtsIMutI CAGTG 4 cut(s) 139, 210, 345, 1563
Cac8I GCNNGC 2 cut(s) 1471, 1647
CciI TCATGA 1 cut(s) 1407
CfoI GCGC 1 cut(s) 1579
Cfr10I RCCGGY 1 cut(s) 1125
Cfr13I GGNCC 3 cut(s) 1440, 1551, 1795
Csp6I GTAC 2 cut(s) 75, 1833
CspAI ACCGGT 1 cut(s) 1125
CviAII CATG 6 cut(s) 104, 660, 938, 1408, 1424, 1684
CviQI GTAC 2 cut(s) 75, 1833
DdeI CTNAG 9 cut(s) 45, 96, 150, 171, 195, 280, 330, 1378, 1414
DpnI GATC 7 cut(s) 372, 543, 645, 742, 1364, 1453, 1809
DpnII GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
DriI GACNNNNNGTC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 1735
Eam1104I CTCTTC 1 cut(s) 901
Eam1105I GACNNNNNGTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 901
Ecl136II GAGCTC 1 cut(s) 1742
Eco130I CCWWGG 2 cut(s) 611, 1016
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 318, 1744
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 3 cut(s) 1440, 1551, 1795
Eco53kI GAGCTC 1 cut(s) 1742
Eco57I CTGAAG 1 cut(s) 1224
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 1742
EcoRI GAATTC 2 cut(s) 834, 1330
EcoRII CCWGG 3 cut(s) 475, 523, 1320
EcoT14I CCWWGG 2 cut(s) 611, 1016
EcoT38I GRGCYC 2 cut(s) 318, 1744
ErhI CCWWGG 2 cut(s) 611, 1016
FaeI CATG 6 cut(s) 107, 663, 941, 1411, 1427, 1687
FalI AAGNNNNNCTT 2 cut(s) 988, 1020
FatI CATG 6 cut(s) 103, 659, 937, 1407, 1423, 1683
FbaI TGATCA 2 cut(s) 370, 1362
Fnu4HI GCNGC 1 cut(s) 1479
FokI GGATG 5 cut(s) 17, 545, 711, 983, 1778
FriOI GRGCYC 2 cut(s) 318, 1744
Fsp4HI GCNGC 1 cut(s) 1479
FspBI CTAG 7 cut(s) 458, 501, 612, 620, 669, 933, 1221
GlaI GCGC 1 cut(s) 1578
GluI GCNGC 1 cut(s) 1479
GsaI CCCAGC 1 cut(s) 1467
GsuI CTGGAG 1 cut(s) 1587
HaeIII GGCC 3 cut(s) 673, 1737, 1770
HapII CCGG 3 cut(s) 805, 1126, 1549
HhaI GCGC 1 cut(s) 1579
Hin1II CATG 6 cut(s) 107, 663, 941, 1411, 1427, 1687
Hin6I GCGC 1 cut(s) 1577
HinP1I GCGC 1 cut(s) 1577
HindIII AAGCTT 1 cut(s) 588
HpaII CCGG 3 cut(s) 805, 1126, 1549
HphI GGTGA 2 cut(s) 575, 789
Hpy166II GTNNAC 4 cut(s) 930, 1063, 1729, 1795
Hpy188III TCNNGA 6 cut(s) 728, 968, 1354, 1366, 1394, 1408
Hpy8I GTNNAC 4 cut(s) 930, 1063, 1729, 1795
HpyAV CCTTC 5 cut(s) 918, 1261, 1269, 1340, 1699
HpyCH4III ACNGT 3 cut(s) 508, 1227, 1712
HpyCH4IV ACGT 1 cut(s) 1158
HpyCH4V TGCA 9 cut(s) 8, 404, 812, 888, 1237, 1478, 1716, 1729, 1748
HpyF10VI GCNNNNNNNGC 3 cut(s) 1103, 1207, 1475
HpyF3I CTNAG 9 cut(s) 45, 96, 150, 171, 195, 280, 330, 1378, 1414
HpySE526I ACGT 1 cut(s) 1158
Hsp92II CATG 6 cut(s) 107, 663, 941, 1411, 1427, 1687
HspAI GCGC 1 cut(s) 1577
Ksp22I TGATCA 2 cut(s) 370, 1362
Kzo9I GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
LmnI GCTCC 2 cut(s) 313, 1747
Lsp1109I GCAGC 1 cut(s) 1490
LweI GCATC 3 cut(s) 337, 487, 1490
MaeI CTAG 7 cut(s) 458, 501, 612, 620, 669, 933, 1221
MaeII ACGT 1 cut(s) 1158
MaeIII GTNAC 1 cut(s) 442
MalI GATC 7 cut(s) 372, 543, 645, 742, 1364, 1453, 1809
MboI GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
MboII GAAGA 4 cut(s) 31, 918, 1129, 1394
MfeI CAATTG 2 cut(s) 866, 1618
MflI RGATCY 4 cut(s) 541, 643, 740, 1451
MhlI GDGCHC 3 cut(s) 318, 1731, 1744
MlyI GAGTC 6 cut(s) 142, 158, 163, 460, 665, 1021
MmeI TCCRAC 3 cut(s) 291, 490, 1467
MnlI CCTC 5 cut(s) 473, 775, 1514, 1562, 1755
MroXI GAANNNNTTC 2 cut(s) 1373, 1389
MseI TTAA 5 cut(s) 141, 234, 789, 1290, 1593
MslI CAYNNNNRTG 2 cut(s) 108, 1302
MspA1I CMGCKG 2 cut(s) 560, 1097
MspI CCGG 3 cut(s) 805, 1126, 1549
MspR9I CCNGG 4 cut(s) 477, 525, 805, 1322
MunI CAATTG 2 cut(s) 866, 1618
MvaI CCWGG 3 cut(s) 477, 525, 1322
MvnI CGCG 1 cut(s) 1579
MwoI GCNNNNNNNGC 3 cut(s) 1103, 1207, 1475
NciI CCSGG 1 cut(s) 805
NdeII GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
NlaIII CATG 6 cut(s) 107, 663, 941, 1411, 1427, 1687
NlaIV GGNNCC 2 cut(s) 315, 1533
NmeAIII GCCGAG 2 cut(s) 839, 1763
NmuCI GTSAC 1 cut(s) 442
NspV TTCGAA 1 cut(s) 1273
PagI TCATGA 1 cut(s) 1407
PceI AGGCCT 1 cut(s) 673
PdmI GAANNNNTTC 2 cut(s) 1373, 1389
PfeI GAWTC 9 cut(s) 191, 326, 397, 893, 1100, 1148, 1163, 1350, 1505
PinAI ACCGGT 1 cut(s) 1125
PkrI GCNGC 1 cut(s) 1480
PleI GAGTC 6 cut(s) 142, 158, 163, 459, 664, 1020
PpsI GAGTC 6 cut(s) 142, 158, 163, 459, 664, 1020
Psp124BI GAGCTC 1 cut(s) 1744
Psp6I CCWGG 3 cut(s) 475, 523, 1320
PspFI CCCAGC 1 cut(s) 1463
PspGI CCWGG 3 cut(s) 475, 523, 1320
PspN4I GGNNCC 2 cut(s) 315, 1533
PspPI GGNCC 3 cut(s) 1440, 1551, 1795
PsuI RGATCY 4 cut(s) 541, 643, 740, 1451
PvuII CAGCTG 2 cut(s) 560, 1097
RsaI GTAC 2 cut(s) 76, 1834
RsaNI GTAC 2 cut(s) 75, 1833
RseI CAYNNNNRTG 2 cut(s) 108, 1302
SacI GAGCTC 1 cut(s) 1744
SaqAI TTAA 5 cut(s) 141, 234, 789, 1290, 1593
SatI GCNGC 1 cut(s) 1479
Sau3AI GATC 7 cut(s) 370, 541, 643, 740, 1362, 1451, 1807
Sau96I GGNCC 3 cut(s) 1440, 1551, 1795
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 6 cut(s) 142, 158, 163, 460, 665, 1021
ScrFI CCNGG 4 cut(s) 477, 525, 805, 1322
SduI GDGCHC 3 cut(s) 318, 1731, 1744
SfaNI GCATC 3 cut(s) 337, 487, 1490
SfuI TTCGAA 1 cut(s) 1273
SinI GGWCC 3 cut(s) 1440, 1551, 1795
SmiMI CAYNNNNRTG 2 cut(s) 108, 1302
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SseBI AGGCCT 1 cut(s) 673
SspMI CTAG 7 cut(s) 458, 501, 612, 620, 669, 933, 1221
SstI GAGCTC 1 cut(s) 1744
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 4 cut(s) 475, 523, 803, 1320
StyI CCWWGG 2 cut(s) 611, 1016
TaaI ACNGT 3 cut(s) 508, 1227, 1712
TaiI ACGT 1 cut(s) 1161
TaqI TCGA 4 cut(s) 167, 976, 1166, 1273
TatI WGTACW 2 cut(s) 74, 1832
TfiI GAWTC 9 cut(s) 191, 326, 397, 893, 1100, 1148, 1163, 1350, 1505
Tru1I TTAA 5 cut(s) 141, 234, 789, 1290, 1593
Tru9I TTAA 5 cut(s) 141, 234, 789, 1290, 1593
TscAI CASTG 4 cut(s) 139, 210, 345, 1570
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 1478
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 6 cut(s) 32, 713, 1020, 1320, 1359, 1424
TspRI CASTG 4 cut(s) 139, 210, 345, 1570
VneI GTGCAC 1 cut(s) 1727
VpaK11BI GGWCC 3 cut(s) 1440, 1551, 1795
XapI RAATTY 4 cut(s) 791, 834, 1330, 1357
XmaJI CCTAGG 1 cut(s) 611
XmnI GAANNNNTTC 2 cut(s) 1373, 1389
XspI CTAG 7 cut(s) 458, 501, 612, 620, 669, 933, 1221
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.