Rmu_co8497655.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8497655.1
Physical Location & Seq
Forward (+)
1 .. 1789
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8497655.1_g000001.1.cds

Sequence Viewer

Length: 1692 bp
gagattgattctcagaacccagtgaatgatagcacagcccccattgtagttaatcagacccagaaagaaaccaatttgacccagaaagaaacaaacttagcccagaaagaaaccagcttgacccagttggagcccgagattgattctcagaacccagtgaatgatgcccagtatgagaccctttctgatcagaaatcaactggggtttctgtgattcctgcaatgttgaactgggtttctgctaatttagagcctgatgtgacaaagagtctcctagctaaatggttagcaccaggaggagagccttgtagagatgctaggactgttggaatagcaattcctggtttggatggtaaggatctgcttgagttgtcagctggtgaaatctatgagtttgggtttcaagctttagatgagaataagaagcctaggtgtctaggtggggattactttgagacagatctttctggggagtcatggaaatctaggcctgttgtgaaagattttggtaatgggtcttattcgctttcgcttcaagttcatccagactttgtgggatcttacaatcttactataatcctactatttaggcattttgagggtcttaaattctcacctacccggtttgcatacgatagagagcttcgcagaattccaatcaggttttacaaaggctcggctcaattgccagagctacaagtttgcaaagaatctgattttggaagagatgtttggactggaaggtggactaggcatggtaagaatgacgagtgtgagattagtcaggatggtcgatacaggtgcttatccccaagttttccttgccagagtccttggtgtaatggttcattggggtctttggaaagtaatggttgggtttactccacacattgttcgttcagattgttttcagctgattctgcttggaattgcttgaataaccggtggcttttcttctggggcgattccaatcacgttgattcgatacgaaacattctcaactttatcttggatatgcctgaagtgctttcagttcctagacggtttgatatgcactttacaaacccgaaagacccttcacagaaggttcgaattacaagcctttttaatggtcattggaatgaaacacagaattaccagggtttgaattccttgaaagatgaaggattcaggaatttgatcaagaagtatttctcagaagaaaaagttccagatactataatcatgaactcaggcttacatgatggcgtattttggtccaacctaagatctttttctgctggggcaagctatgcagcatcattttgggtggaagttatggattcaataaggcagagaggtttggtggtgccaaaagtcttttaccggaccacaatagccactggagggtatgcgcgaactctggcgtttaatcctaataagatggagacattcaattggatactcatagagaaattgaagcaagctggtatccttactggtgtgattgacaattttgacatgaccttcccgtggcattttgataaccgttgcaatgatggagtgcactatggccgagctcctgcaaaggcaaagtggagggatggccttattggacaccactattttgtggaccttatgctggatcatatatgctatcaagagtatctgaaatgcaggctcatccctgaatgccagaatgaagggcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

563

Amino Acids

64.23

Weight (kDa)

5.84

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1348
AccII CGCG 1 cut(s) 1396
AclWI GGATC 3 cut(s) 366, 565, 1632
AcoI YGGCCR 1 cut(s) 1552
AcsI RAATTY 4 cut(s) 608, 651, 1147, 1174
AcuI CTGAAG 1 cut(s) 1041
AfiI CCNNNNNNNGG 3 cut(s) 1386, 1512, 1621
AgeI ACCGGT 1 cut(s) 942
AgsI TTSAA 9 cut(s) 229, 404, 536, 937, 1147, 1156, 1326, 1435, 1459
AhdI GACNNNNNGTC 1 cut(s) 267
AjnI CCWGG 3 cut(s) 292, 340, 1137
AjuI GAANNNNNNNTTGG 4 cut(s) 702, 715, 734, 747
Alw21I GWGCWC 2 cut(s) 1548, 1561
Alw26I GTCTC 4 cut(s) 170, 275, 449, 1421
Alw44I GTGCAC 1 cut(s) 1544
AlwI GGATC 3 cut(s) 366, 565, 1632
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 3 cut(s) 488, 1552, 1585
ApaLI GTGCAC 1 cut(s) 1544
ApeKI GCWGC 1 cut(s) 1295
ApoI RAATTY 4 cut(s) 608, 651, 1147, 1174
AsiGI ACCGGT 1 cut(s) 942
Asp700I GAANNNNTTC 2 cut(s) 1190, 1206
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 1 cut(s) 1396
AspS9I GGNCC 3 cut(s) 1257, 1368, 1612
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 2 cut(s) 392, 606
AsuII TTCGAA 1 cut(s) 1090
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 3 cut(s) 1257, 1368, 1612
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 1548
BanI GGYRCC 1 cut(s) 1348
BanII GRGCYC 2 cut(s) 135, 1561
Bbv12I GWGCWC 2 cut(s) 1548, 1561
BbvI GCAGC 1 cut(s) 1307
BccI CCATC 6 cut(s) 344, 782, 1238, 1417, 1532, 1577
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciT130I CCWGG 3 cut(s) 294, 342, 1139
BciVI GTATCC 2 cut(s) 1434, 1481
BclI TGATCA 2 cut(s) 187, 1179
BcnI CCSGG 1 cut(s) 622
BcoDI GTCTC 4 cut(s) 170, 275, 449, 1421
BfaI CTAG 7 cut(s) 275, 318, 429, 437, 486, 750, 1038
BfuI GTATCC 2 cut(s) 1434, 1481
BglII AGATCT 2 cut(s) 460, 1268
BisI GCNGC 1 cut(s) 1296
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 1 cut(s) 1297
Bme1390I CCNGG 4 cut(s) 294, 342, 622, 1139
Bme18I GGWCC 3 cut(s) 1257, 1368, 1612
BmeRI GACNNNNNGTC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 3 cut(s) 1257, 1368, 1612
BmiI GGNNCC 2 cut(s) 132, 1350
BmrFI CCNGG 4 cut(s) 294, 342, 622, 1139
BmrI ACTGGG 6 cut(s) 14, 118, 149, 163, 210, 241
BmsI GCATC 3 cut(s) 154, 304, 1307
BmuI ACTGGG 6 cut(s) 14, 118, 149, 163, 210, 241
BpmI CTGGAG 1 cut(s) 1404
Bpu14I TTCGAA 1 cut(s) 1090
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 622
BsaBI GATNNNNATC 1 cut(s) 969
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 428, 833, 1138, 1511
BsaWI WCCGGW 2 cut(s) 942, 1365
Bsc4I CCNNNNNNNGG 3 cut(s) 1386, 1512, 1621
Bse118I RCCGGY 1 cut(s) 942
Bse1I ACTGG 9 cut(s) 20, 124, 155, 169, 205, 236, 742, 1387, 1483
Bse3DI GCAATG 2 cut(s) 228, 1540
Bse8I GATNNNNATC 1 cut(s) 969
BseBI CCWGG 3 cut(s) 294, 342, 1139
BseDI CCNNGG 4 cut(s) 428, 833, 1138, 1511
BseGI GGATG 5 cut(s) 355, 541, 793, 1588, 1662
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 3 cut(s) 1386, 1512, 1621
BseMI GCAATG 2 cut(s) 228, 1540
BseMII CTCAG 4 cut(s) 26, 161, 1209, 1245
BseNI ACTGG 9 cut(s) 20, 124, 155, 169, 205, 236, 742, 1387, 1483
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 1548
BseXI GCAGC 1 cut(s) 1307
BseYI CCCAGC 1 cut(s) 1280
Bsh1236I CGCG 1 cut(s) 1396
BshFI GGCC 3 cut(s) 490, 1554, 1587
BshNI GGYRCC 1 cut(s) 1348
BshTI ACCGGT 1 cut(s) 942
BsiHKAI GWGCWC 2 cut(s) 1548, 1561
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 622, 943, 1366
BslI CCNNNNNNNGG 3 cut(s) 1386, 1512, 1621
BsmAI GTCTC 4 cut(s) 170, 275, 449, 1421
BsmI GAATGC 1 cut(s) 1676
BsnI GGCC 3 cut(s) 490, 1554, 1587
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 1090
Bsp1286I GDGCHC 3 cut(s) 135, 1548, 1561
Bsp143I GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
BspANI GGCC 3 cut(s) 490, 1554, 1587
BspCNI CTCAG 4 cut(s) 25, 160, 1208, 1244
BspFNI CGCG 1 cut(s) 1396
BspHI TCATGA 1 cut(s) 1224
BspLI GGNNCC 2 cut(s) 132, 1350
BspPI GGATC 3 cut(s) 366, 565, 1632
BspT104I TTCGAA 1 cut(s) 1090
BspT107I GGYRCC 1 cut(s) 1348
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 228, 1540
BsrFI RCCGGY 1 cut(s) 942
BsrI ACTGG 9 cut(s) 20, 124, 155, 169, 205, 236, 742, 1387, 1483
BssAI RCCGGY 1 cut(s) 942
BssECI CCNNGG 4 cut(s) 428, 833, 1138, 1511
BssMI GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
BssT1I CCWWGG 2 cut(s) 428, 833
Bst2UI CCWGG 3 cut(s) 294, 342, 1139
Bst4CI ACNGT 3 cut(s) 325, 1044, 1529
Bst6I CTCTTC 1 cut(s) 718
BstAPI GCANNNNNTGC 1 cut(s) 1292
BstBI TTCGAA 1 cut(s) 1090
BstC8I GCNNGC 3 cut(s) 1288, 1464, 1658
BstDEI CTNAG 6 cut(s) 12, 97, 147, 1195, 1231, 1265
BstDSI CCRYGG 1 cut(s) 1511
BstF5I GGATG 5 cut(s) 355, 541, 793, 1588, 1662
BstFNI CGCG 1 cut(s) 1396
BstHHI GCGC 1 cut(s) 1396
BstKTI GATC 7 cut(s) 190, 361, 463, 560, 1182, 1271, 1627
BstMAI GTCTC 4 cut(s) 170, 275, 449, 1421
BstMBI GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
BstMWI GCNNNNNNNGC 3 cut(s) 920, 1024, 1292
BstNI CCWGG 3 cut(s) 294, 342, 1139
BstSCI CCNGG 4 cut(s) 292, 340, 620, 1137
BstSLI GKGCMC 1 cut(s) 1548
BstUI CGCG 1 cut(s) 1396
BstV1I GCAGC 1 cut(s) 1307
BstX2I RGATCY 4 cut(s) 358, 460, 557, 1268
BstYI RGATCY 4 cut(s) 358, 460, 557, 1268
BsuI GTATCC 2 cut(s) 1434, 1481
BsuRI GGCC 3 cut(s) 490, 1554, 1587
BtgI CCRYGG 1 cut(s) 1511
BtsCI GGATG 5 cut(s) 355, 541, 793, 1588, 1662
BtsIMutI CAGTG 3 cut(s) 27, 162, 1380
Cac8I GCNNGC 3 cut(s) 1288, 1464, 1658
CciI TCATGA 1 cut(s) 1224
CfoI GCGC 1 cut(s) 1396
Cfr10I RCCGGY 1 cut(s) 942
Cfr13I GGNCC 3 cut(s) 1257, 1368, 1612
CspAI ACCGGT 1 cut(s) 942
CviAII CATG 5 cut(s) 477, 755, 1225, 1241, 1501
DdeI CTNAG 6 cut(s) 12, 97, 147, 1195, 1231, 1265
DpnI GATC 7 cut(s) 189, 360, 462, 559, 1181, 1270, 1626
DpnII GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
DriI GACNNNNNGTC 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 1552
Eam1104I CTCTTC 1 cut(s) 718
Eam1105I GACNNNNNGTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 718
Ecl136II GAGCTC 1 cut(s) 1559
Eco130I CCWWGG 2 cut(s) 428, 833
Eco147I AGGCCT 1 cut(s) 490
Eco24I GRGCYC 2 cut(s) 135, 1561
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 3 cut(s) 1257, 1368, 1612
Eco53kI GAGCTC 1 cut(s) 1559
Eco57I CTGAAG 1 cut(s) 1041
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 1559
EcoRI GAATTC 2 cut(s) 651, 1147
EcoRII CCWGG 3 cut(s) 292, 340, 1137
EcoT14I CCWWGG 2 cut(s) 428, 833
EcoT38I GRGCYC 2 cut(s) 135, 1561
ErhI CCWWGG 2 cut(s) 428, 833
FaeI CATG 5 cut(s) 480, 758, 1228, 1244, 1504
FalI AAGNNNNNCTT 2 cut(s) 805, 837
FatI CATG 5 cut(s) 476, 754, 1224, 1240, 1500
FbaI TGATCA 2 cut(s) 187, 1179
Fnu4HI GCNGC 1 cut(s) 1296
FokI GGATG 5 cut(s) 362, 528, 800, 1595, 1649
FriOI GRGCYC 2 cut(s) 135, 1561
Fsp4HI GCNGC 1 cut(s) 1296
FspBI CTAG 7 cut(s) 275, 318, 429, 437, 486, 750, 1038
GlaI GCGC 1 cut(s) 1395
GluI GCNGC 1 cut(s) 1296
GsaI CCCAGC 1 cut(s) 1284
GsuI CTGGAG 1 cut(s) 1404
HaeIII GGCC 3 cut(s) 490, 1554, 1587
HapII CCGG 3 cut(s) 622, 943, 1366
HhaI GCGC 1 cut(s) 1396
Hin1II CATG 5 cut(s) 480, 758, 1228, 1244, 1504
Hin6I GCGC 1 cut(s) 1394
HinP1I GCGC 1 cut(s) 1394
HindIII AAGCTT 1 cut(s) 405
HpaII CCGG 3 cut(s) 622, 943, 1366
HphI GGTGA 2 cut(s) 392, 606
Hpy166II GTNNAC 4 cut(s) 747, 880, 1546, 1612
Hpy188I TCNGA 9 cut(s) 15, 57, 150, 187, 192, 715, 902, 1198, 1650
Hpy188III TCNNGA 7 cut(s) 545, 785, 1171, 1183, 1211, 1225, 1640
Hpy8I GTNNAC 4 cut(s) 747, 880, 1546, 1612
HpyAV CCTTC 6 cut(s) 735, 1078, 1086, 1157, 1516, 1676
HpyCH4III ACNGT 3 cut(s) 325, 1044, 1529
HpyCH4IV ACGT 1 cut(s) 975
HpyCH4V TGCA 9 cut(s) 221, 629, 705, 1054, 1295, 1533, 1546, 1565, 1656
HpyF10VI GCNNNNNNNGC 3 cut(s) 920, 1024, 1292
HpyF3I CTNAG 6 cut(s) 12, 97, 147, 1195, 1231, 1265
HpySE526I ACGT 1 cut(s) 975
Hsp92II CATG 5 cut(s) 480, 758, 1228, 1244, 1504
HspAI GCGC 1 cut(s) 1394
Ksp22I TGATCA 2 cut(s) 187, 1179
Kzo9I GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
LmnI GCTCC 2 cut(s) 130, 1564
Lsp1109I GCAGC 1 cut(s) 1307
LweI GCATC 3 cut(s) 154, 304, 1307
MaeI CTAG 7 cut(s) 275, 318, 429, 437, 486, 750, 1038
MaeII ACGT 1 cut(s) 975
MaeIII GTNAC 1 cut(s) 259
MalI GATC 7 cut(s) 189, 360, 462, 559, 1181, 1270, 1626
MboI GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
MboII GAAGA 3 cut(s) 735, 946, 1211
MfeI CAATTG 2 cut(s) 683, 1435
MflI RGATCY 4 cut(s) 358, 460, 557, 1268
MhlI GDGCHC 3 cut(s) 135, 1548, 1561
MlyI GAGTC 3 cut(s) 277, 482, 838
MmeI TCCRAC 3 cut(s) 108, 307, 1284
MnlI CCTC 5 cut(s) 290, 592, 1331, 1379, 1572
MroXI GAANNNNTTC 2 cut(s) 1190, 1206
MseI TTAA 4 cut(s) 51, 606, 1107, 1410
MslI CAYNNNNRTG 1 cut(s) 1119
MspA1I CMGCKG 2 cut(s) 377, 914
MspI CCGG 3 cut(s) 622, 943, 1366
MspR9I CCNGG 4 cut(s) 294, 342, 622, 1139
MunI CAATTG 2 cut(s) 683, 1435
Mva1269I GAATGC 1 cut(s) 1676
MvaI CCWGG 3 cut(s) 294, 342, 1139
MvnI CGCG 1 cut(s) 1396
MwoI GCNNNNNNNGC 3 cut(s) 920, 1024, 1292
NciI CCSGG 1 cut(s) 622
NdeII GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
NlaIII CATG 5 cut(s) 480, 758, 1228, 1244, 1504
NlaIV GGNNCC 2 cut(s) 132, 1350
NmeAIII GCCGAG 2 cut(s) 656, 1580
NmuCI GTSAC 1 cut(s) 259
NspV TTCGAA 1 cut(s) 1090
PagI TCATGA 1 cut(s) 1224
PceI AGGCCT 1 cut(s) 490
PctI GAATGC 1 cut(s) 1676
PdmI GAANNNNTTC 2 cut(s) 1190, 1206
PfeI GAWTC 9 cut(s) 8, 143, 214, 710, 917, 965, 980, 1167, 1322
PinAI ACCGGT 1 cut(s) 942
PkrI GCNGC 1 cut(s) 1297
PleI GAGTC 3 cut(s) 276, 481, 837
PpsI GAGTC 3 cut(s) 276, 481, 837
Psp124BI GAGCTC 1 cut(s) 1561
Psp6I CCWGG 3 cut(s) 292, 340, 1137
PspFI CCCAGC 1 cut(s) 1280
PspGI CCWGG 3 cut(s) 292, 340, 1137
PspN4I GGNNCC 2 cut(s) 132, 1350
PspPI GGNCC 3 cut(s) 1257, 1368, 1612
PsuI RGATCY 4 cut(s) 358, 460, 557, 1268
PvuII CAGCTG 2 cut(s) 377, 914
RseI CAYNNNNRTG 1 cut(s) 1119
SacI GAGCTC 1 cut(s) 1561
SaqAI TTAA 4 cut(s) 51, 606, 1107, 1410
SatI GCNGC 1 cut(s) 1296
Sau3AI GATC 7 cut(s) 187, 358, 460, 557, 1179, 1268, 1624
Sau96I GGNCC 3 cut(s) 1257, 1368, 1612
SchI GAGTC 3 cut(s) 277, 482, 838
ScrFI CCNGG 4 cut(s) 294, 342, 622, 1139
SduI GDGCHC 3 cut(s) 135, 1548, 1561
SfaNI GCATC 3 cut(s) 154, 304, 1307
SfuI TTCGAA 1 cut(s) 1090
SinI GGWCC 3 cut(s) 1257, 1368, 1612
SmiMI CAYNNNNRTG 1 cut(s) 1119
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 490
SspMI CTAG 7 cut(s) 275, 318, 429, 437, 486, 750, 1038
SstI GAGCTC 1 cut(s) 1561
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 4 cut(s) 292, 340, 620, 1137
StyI CCWWGG 2 cut(s) 428, 833
TaaI ACNGT 3 cut(s) 325, 1044, 1529
TaiI ACGT 1 cut(s) 978
TaqI TCGA 3 cut(s) 793, 983, 1090
TfiI GAWTC 9 cut(s) 8, 143, 214, 710, 917, 965, 980, 1167, 1322
Tru1I TTAA 4 cut(s) 51, 606, 1107, 1410
Tru9I TTAA 4 cut(s) 51, 606, 1107, 1410
TscAI CASTG 3 cut(s) 27, 162, 1387
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 1295
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 5 cut(s) 530, 837, 1137, 1176, 1241
TspRI CASTG 3 cut(s) 27, 162, 1387
VneI GTGCAC 1 cut(s) 1544
VpaK11BI GGWCC 3 cut(s) 1257, 1368, 1612
XapI RAATTY 4 cut(s) 608, 651, 1147, 1174
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 2 cut(s) 1190, 1206
XspI CTAG 7 cut(s) 275, 318, 429, 437, 486, 750, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.