Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009100

Physical Location & Seq

Genomic Coordinates Forward (+)

26722369 .. 26725797

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCGAACGAAAAGTCGGTGATGGCGGTGATCAGAGCGGCGAGGCCAACCTTCCGCAACAACAACGACAAGGTTGCTTTTGCGGTTCACGCCTCTTTCGTAGCCTCCGGGTACGAGCTCATCGCCACCGGGCCTCCTGCTTTTTCCGATTCTGCCCTCCTCTCCTCCTCCTCCTCAACCGATGAAGTAGGAATCGATGGATGGAACGAGCTTGACGAGGAGTACGCTTTCGTCTACGCCAACGCCGAAAACAAGAACAAGTTACTGGTCAAATGCCTTGTGATGAACGAGAAATTGTTCGTGGATGCTTTGGCTTCTCACTCTCTCCATCTCGAAATCAATGTGGGTGACTATGTTGGAGGAGAGAGTGGCAGCAATTACTCTTCACAGTTCAAAAATTTGGAGACACTGGTCAACACTCTGGACGCTCAGCTTTTGTCTAAATTGGATTCCAGTTCCTCAACTAGTAACATTGCCCCCGTAAGTTCAGAAACAAGAGAGAGATCAACAACTGAGCCTCCTACTCGACCTTCGGATCCTCCTCTTCCTTCCAGAATTGTCTATCCTTCTGTTAATCCTATAGGTGATAGTGATCGTTTCCCTGGGCTTGGTGCTGGAATGTATCCTGCTAGAGGTGATTTTGGTGGTGGAGGCATGCTTCTAGGACCAAATGATCCTCGGTGGTTTGGTGGCATTAGAGAACCTGGGTTTCCTGGAGGACAACCGGGTGTTCCTCCTGGTGCTCGTTTTGACCCCTATGGGCCACCTGGTGTTCCTGGTTTTGAGCCCAATAGGTTTGCAAGGAATCCACGGAGACCGGGGGGTGGCACTCATCCAGACTTGGAACATTTTGGGAGTGGTTCTGATTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

30.98

Weight (kDa)

5.0

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI31_Prot_N	PF11566	15 - 153	1.4e-22	PI31 proteasome regulator N-terminal
PI31_Prot_C	PF08577	194 - 255	2.4e-06	PI31 proteasome regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06150 AT5G19060
fragaria_vesca	FvH4_4g14471 FvH4_4g14471
malus_domestica	MD13G1183000.v1.1 MD16G1183600.v1.1
prunus_persica	Prupe.1G151300_v2.0.a1 Prupe.1G151300_v2.0.a1
pyrus_communis	pycom13g15800 pycom16g15440
rosa_chinensis	RchiOBHm_Chr4g0418361
rosa_laevigata	RLG00000007872
rosa_multiflora	Rmu_co8497655.1_g000001 Rmu_sc0009909.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361540
rosa_rugosa	Rorug04G0152400 Rorug04G0152500
rosa_samantha	Rh4AG214100 Rh4BG216300 Rh4CG225700 Rh4DG212500
rosa_wichuraiana	Rw4G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	4 cut(s)	26, 38, 55, 83
AclWI	GGATC	3 cut(s)	530, 543, 668
AcsI	RAATTY	1 cut(s)	397
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	2 cut(s)	113, 224
AfiI	CCNNNNNNNGG	3 cut(s)	608, 632, 824
AgsI	TTSAA	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	6 cut(s)	601, 703, 712, 736, 766, 775
AluBI	AGCT	3 cut(s)	118, 211, 433
AluI	AGCT	3 cut(s)	118, 211, 433
Alw21I	GWGCWC	2 cut(s)	120, 745
Alw26I	GTCTC	2 cut(s)	398, 808
AlwI	GGATC	3 cut(s)	530, 543, 668
AoxI	GGCC	3 cut(s)	44, 131, 761
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	131, 665, 761
AsuC2I	CCSGG	4 cut(s)	109, 130, 726, 819
AsuHPI	GGTGA	5 cut(s)	31, 40, 359, 596, 647
AvaII	GGWCC	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	120, 789
Bbv12I	GWGCWC	2 cut(s)	120, 745
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	4 cut(s)	16, 191, 195, 336
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	6 cut(s)	603, 705, 714, 738, 768, 777
BciVI	GTATCC	1 cut(s)	633
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	4 cut(s)	109, 130, 726, 819
BcoDI	GTCTC	2 cut(s)	398, 808
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	3 cut(s)	465, 630, 662
BfmI	CTRYAG	1 cut(s)	579
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	2 cut(s)	39, 373
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	2 cut(s)	40, 374
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	131, 665, 761
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuMI	CCSGG	4 cut(s)	109, 130, 726, 819
Bsa29I	ATCGAT	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	6 cut(s)	601, 602, 677, 704, 809, 818
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 632, 824
Bse1I	ACTGG	3 cut(s)	270, 414, 453
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	6 cut(s)	603, 705, 714, 738, 768, 777
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	6 cut(s)	601, 602, 677, 704, 809, 818
BseGI	GGATG	3 cut(s)	206, 310, 832
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	608, 632, 824
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	443, 504
BseNI	ACTGG	3 cut(s)	270, 414, 453
BseRI	GAGGAG	8 cut(s)	149, 154, 157, 160, 163, 233, 375, 531
BseXI	GCAGC	1 cut(s)	384
BshFI	GGCC	3 cut(s)	46, 133, 763
BshVI	ATCGAT	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	120, 745
BsiSI	CCGG	4 cut(s)	108, 129, 725, 818
BslI	CCNNNNNNNGG	3 cut(s)	608, 632, 824
BsmAI	GTCTC	2 cut(s)	398, 808
BsnI	GGCC	3 cut(s)	46, 133, 763
Bso31I	GGTCTC	1 cut(s)	808
Bsp1286I	GDGCHC	3 cut(s)	120, 745, 789
Bsp143I	GATC	5 cut(s)	30, 503, 535, 592, 673
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	4 cut(s)	26, 38, 55, 83
BspANI	GGCC	3 cut(s)	46, 133, 763
BspCNI	CTCAG	2 cut(s)	442, 505
BspDI	ATCGAT	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	3 cut(s)	530, 543, 668
BspTNI	GGTCTC	1 cut(s)	808
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	270, 414, 453
BssECI	CCNNGG	6 cut(s)	601, 602, 677, 704, 809, 818
BssMI	GATC	5 cut(s)	30, 503, 535, 592, 673
Bst2UI	CCWGG	6 cut(s)	603, 705, 714, 738, 768, 777
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	2 cut(s)	388, 549
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	2 cut(s)	429, 513
BstDSI	CCRYGG	1 cut(s)	809
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	206, 310, 832
BstKTI	GATC	5 cut(s)	33, 506, 538, 595, 676
BstMAI	GTCTC	2 cut(s)	398, 808
BstMBI	GATC	5 cut(s)	30, 503, 535, 592, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	6 cut(s)	603, 705, 714, 738, 768, 777
BstNSI	RCATGY	1 cut(s)	658
BstPAI	GACNNNNGTC	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	46, 133, 763
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	809
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	206, 310, 832
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	656
Cfr13I	GGNCC	3 cut(s)	131, 665, 761
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	434
CsiI	ACCWGGT	1 cut(s)	766
Csp6I	GTAC	2 cut(s)	112, 223
CviAII	CATG	1 cut(s)	655
CviQI	GTAC	2 cut(s)	112, 223
DdeI	CTNAG	2 cut(s)	429, 513
DpnI	GATC	5 cut(s)	32, 505, 537, 594, 675
DpnII	GATC	5 cut(s)	30, 503, 535, 592, 673
DraIII	CACNNNGTG	1 cut(s)	770
Eam1104I	CTCTTC	2 cut(s)	388, 549
EarI	CTCTTC	2 cut(s)	388, 549
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	120, 789
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	665
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoRII	CCWGG	6 cut(s)	601, 703, 712, 736, 766, 775
EcoT38I	GRGCYC	2 cut(s)	120, 789
FaeI	CATG	1 cut(s)	658
FaiI	YATR	4 cut(s)	354, 581, 656, 759
FatI	CATG	1 cut(s)	654
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	39, 373
FokI	GGATG	3 cut(s)	213, 317, 819
FriOI	GRGCYC	2 cut(s)	120, 789
Fsp4HI	GCNGC	2 cut(s)	39, 373
FspBI	CTAG	3 cut(s)	465, 630, 662
GluI	GCNGC	2 cut(s)	39, 373
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	46, 133, 763
HapII	CCGG	4 cut(s)	108, 129, 725, 818
HgaI	GACGC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	658
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	4 cut(s)	149, 192, 449, 805
HpaII	CCGG	4 cut(s)	108, 129, 725, 818
HphI	GGTGA	5 cut(s)	31, 40, 359, 596, 647
Hpy166II	GTNNAC	3 cut(s)	88, 235, 415
Hpy188I	TCNGA	5 cut(s)	35, 148, 490, 535, 865
Hpy188III	TCNNGA	4 cut(s)	332, 422, 552, 836
Hpy8I	GTNNAC	3 cut(s)	88, 235, 415
HpyAV	CCTTC	4 cut(s)	61, 540, 558, 576
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	429, 513
Hsp92II	CATG	1 cut(s)	658
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 503, 535, 592, 673
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	766
MaeI	CTAG	3 cut(s)	465, 630, 662
MaeIII	GTNAC	3 cut(s)	261, 347, 467
MalI	GATC	5 cut(s)	32, 505, 537, 594, 675
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	5 cut(s)	30, 503, 535, 592, 673
MboII	GAAGA	2 cut(s)	375, 536
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	120, 745, 789
MluCI	AATT	5 cut(s)	293, 376, 397, 443, 555
MmeI	TCCRAC	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	573
MspI	CCGG	4 cut(s)	108, 129, 725, 818
MvaI	CCWGG	6 cut(s)	603, 705, 714, 738, 768, 777
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	4 cut(s)	109, 130, 726, 819
NdeII	GATC	5 cut(s)	30, 503, 535, 592, 673
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	658
PaeI	GCATGC	1 cut(s)	658
PasI	CCCWGGG	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 213, 243
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	149, 192, 449, 805
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	40, 374
PshAI	GACNNNNGTC	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	6 cut(s)	601, 703, 712, 736, 766, 775
PspGI	CCWGG	6 cut(s)	601, 703, 712, 736, 766, 775
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	3 cut(s)	131, 665, 761
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	2 cut(s)	113, 224
RsaNI	GTAC	2 cut(s)	112, 223
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	2 cut(s)	39, 373
Sau3AI	GATC	5 cut(s)	30, 503, 535, 592, 673
Sau96I	GGNCC	3 cut(s)	131, 665, 761
SduI	GDGCHC	3 cut(s)	120, 745, 789
SexAI	ACCWGGT	1 cut(s)	766
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	665
SpeI	ACTAGT	1 cut(s)	464
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	5 cut(s)	293, 376, 397, 443, 555
SsiI	CCGC	4 cut(s)	26, 38, 55, 83
SspMI	CTAG	3 cut(s)	465, 630, 662
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	195, 333, 526
TasI	AATT	5 cut(s)	293, 376, 397, 443, 555
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	4 cut(s)	149, 192, 449, 805
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	198, 299, 859
TspGWI	ACGGA	1 cut(s)	826
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	665
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	3 cut(s)	465, 630, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.