Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007045

Physical Location & Seq

Genomic Coordinates Reverse (-)

13892856 .. 13899565

Gene Structure 6710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17950.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCAGCACCATGAAGGTGGAAATGGAAAAATCAACCTCACAGTACACATCTTGGCTGCGTCCTTTGTTGGGATTCTGGCTGCTGCTGCTGCTGCCACGAGCAGTTATCGTCGGAAAAAGTCGTATAAGGCGTTGAGAGCTCCAAACAATATCTTTCCACGGATAGAGAGGACGGAATCCGGCCGCGTTGGAAATATCGAAAGATTCTCCCATTATGTCGCTAGGCAACTGGGAATTTTAGATGCAAATAAGTGCCCCCAGCTGTGCAAGTTAGCCTATGACTACTTGAGAAAAACGAAAGGGTGTGAAGATAACATCTACGAATATTTCGCTTCAGAAGCAGATCCAGATTCTCTCTACATAAATTTGATTGATGAATTTGATAGATGCATCCTTAGCTATTTTGCATTTCATTGGAGCCAAGCTACTATAACGATTAGTCAGGTTTTGAATGTAGAGACTAAGAAGAAAACGAAGCTCAAAGACATGGTATTGGCAGCTACCAGGAAGGAGAGATTTGAGAGGATCAATAAGGAGCTAAAGATGACAAGGGTGTTCTCTACGCTGGTAGATGAAATGAAAGCCATCGGAAGCACTTCAATAAAGGGAGAATCACAATGCACGGACGTGATGAAGCCGGTGGCCCATAATGAGAGGAGTCCCGTGCTTCTTCTTATGGGTGGTGGAATGGGGGGTGGCAAAAGCACTGTCCTCAAAGATATTCTCAAAGAGTCATTCTGGTCTGGAGCAGCAGCAGATGCTGTGGTAGTAGAGGCAGATGCTTTCAAAGAGACAGACGTCCTTTACAGAGCCCTTAGCTCTAGAGGTCACCACAGCGACATGCTCCAAACTGCTGAGCTAGTGCACCAATCATCTACTGATGCTGCATCATCGCTTCTAGTGACTGCACTTAATGAAGGAAGGGATGTGATCATGGACGGCACTCTATCATGGATGCCCTTTGTTGAGCAGACAATAACCATGGCCCGGGATGTCCACAAATGCCGCTACAGAATGGGGGTCGGTTACAAGGTGGAGGAAGACGGCACCATTACTGAAAACTATTGGGAACGAGTGGACGATGGAGAGGATCGATCAGGATCAGCAGAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zeta_toxin

Protein Analysis

373

Amino Acids

41.56

Weight (kDa)

6.57

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04280 AT1G04280
fragaria_vesca	FvH4_4g02640 FvH4_4g02640 FvH4_4g02640 FvH4_4g02640 FvH4_4g02640
malus_domestica	MD13G1207100.v1.1
prunus_persica	Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1
pyrus_communis	pycom05g19030 pycom13g17950 pycom16g17580
rosa_chinensis	RchiOBHm_Chr4g0390501
rosa_laevigata	RLG00000009920
rosa_multiflora	Rmu_co8513681.1_g000001 Rmu_sc0013467.1_g000007
rosa_roxburghii	Rroxscaffold_5G00336500
rosa_rugosa	Rorug03G0330900
rosa_samantha	Rh4AG032300 Rh4BG026300 Rh4DG028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	1046
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	184, 1006
AclWI	GGATC	4 cut(s)	338, 533, 1098, 1108
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	234, 364, 377
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	798
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	69, 987
AgsI	TTSAA	3 cut(s)	451, 600, 787
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	503
AleI	CACNNNNGTG	1 cut(s)	626
AluBI	AGCT	9 cut(s)	140, 262, 399, 425, 478, 500, 538, 819, 859
AluI	AGCT	9 cut(s)	140, 262, 399, 425, 478, 500, 538, 819, 859
Alw21I	GWGCWC	2 cut(s)	142, 867
Alw26I	GTCTC	2 cut(s)	452, 785
Alw44I	GTGCAC	1 cut(s)	863
AlwI	GGATC	4 cut(s)	338, 533, 1098, 1108
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	987
AoxI	GGCC	3 cut(s)	181, 642, 984
ApaLI	GTGCAC	1 cut(s)	863
ApoI	RAATTY	3 cut(s)	234, 364, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
Asp700I	GAANNNNTTC	1 cut(s)	595
AspS9I	GGNCC	2 cut(s)	643, 985
AsuC2I	CCSGG	2 cut(s)	988, 989
AsuHPI	GGTGA	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	987
BaeGI	GKGCMC	2 cut(s)	257, 867
BanI	GGYRCC	1 cut(s)	1046
BanII	GRGCYC	2 cut(s)	142, 814
BauI	CACGAG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	2 cut(s)	142, 867
BccI	CCATC	2 cut(s)	593, 1076
BceAI	ACGGC	2 cut(s)	955, 1060
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	930
BcnI	CCSGG	2 cut(s)	988, 989
BcoDI	GTCTC	2 cut(s)	452, 785
BfaI	CTAG	4 cut(s)	222, 822, 860, 899
BfmI	CTRYAG	1 cut(s)	1009
BlpI	GCTNAGC	1 cut(s)	855
Bme1390I	CCNGG	3 cut(s)	505, 988, 989
BmeT110I	CYCGRG	1 cut(s)	987
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	643, 985
BmiI	GGNNCC	2 cut(s)	419, 1048
BmrFI	CCNGG	3 cut(s)	505, 988, 989
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	8 cut(s)	232, 377, 399, 748, 769, 871, 896, 945
BmuI	ACTGGG	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	765
Bpu10I	CCTNAGC	2 cut(s)	395, 815
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	2 cut(s)	988, 989
Bsa29I	ATCGAT	1 cut(s)	1093
BsaBI	GATNNNNATC	1 cut(s)	1099
BsaHI	GRCGYC	1 cut(s)	798
BsaJI	CCNNGG	3 cut(s)	158, 981, 987
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 987
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	1099
BseBI	CCWGG	1 cut(s)	505
BseCI	ATCGAT	1 cut(s)	1093
BseDI	CCNNGG	3 cut(s)	158, 981, 987
BseGI	GGATG	4 cut(s)	390, 931, 960, 997
BseJI	GATNNNNATC	1 cut(s)	1099
BseLI	CCNNNNNNNGG	2 cut(s)	69, 987
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	670
BseSI	GKGCMC	2 cut(s)	257, 867
BseX3I	CGGCCG	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	183, 644, 986
BshNI	GGYRCC	1 cut(s)	1046
BshVI	ATCGAT	1 cut(s)	1093
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	142, 867
BsiHKCI	CYCGRG	1 cut(s)	987
BsiSI	CCGG	3 cut(s)	180, 638, 988
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	69, 987
BsmAI	GTCTC	2 cut(s)	452, 785
BsmFI	GGGAC	1 cut(s)	645
BsnI	GGCC	3 cut(s)	183, 644, 986
BsoBI	CYCGRG	1 cut(s)	987
Bsp1286I	GDGCHC	4 cut(s)	142, 257, 814, 867
Bsp143I	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
Bsp1720I	GCTNAGC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	2 cut(s)	184, 1006
BspANI	GGCC	3 cut(s)	183, 644, 986
BspCNI	CTCAG	1 cut(s)	847
BspDI	ATCGAT	1 cut(s)	1093
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	419, 1048
BspPI	GGATC	4 cut(s)	338, 533, 1098, 1108
BspT107I	GGYRCC	1 cut(s)	1046
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	158, 981, 987
BssMI	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
BssNI	GRCGYC	1 cut(s)	798
BssSI	CACGAG	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	981
Bst2BI	CACGAG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	43, 709
BstACI	GRCGYC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstDEI	CTNAG	4 cut(s)	395, 462, 815, 855
BstDSI	CCRYGG	2 cut(s)	158, 981
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	4 cut(s)	390, 931, 960, 997
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	6 cut(s)	346, 528, 933, 1093, 1097, 1103
BstMAI	GTCTC	2 cut(s)	452, 785
BstMBI	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 89, 92, 137, 338, 396, 758
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	844
BstPAI	GACNNNNGTC	1 cut(s)	797
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	3 cut(s)	503, 986, 987
BstSFI	CTRYAG	1 cut(s)	1009
BstSLI	GKGCMC	2 cut(s)	257, 867
BstUI	CGCG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	1093
BsuRI	GGCC	3 cut(s)	183, 644, 986
BsuTUI	ATCGAT	1 cut(s)	1093
BtgI	CCRYGG	2 cut(s)	158, 981
BtgZI	GCGATG	1 cut(s)	876
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	4 cut(s)	390, 931, 960, 997
BtsIMutI	CAGTG	1 cut(s)	705
CaiI	CAGNNNCTG	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	643, 985
Cfr9I	CCCGGG	1 cut(s)	987
ClaI	ATCGAT	1 cut(s)	1093
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	6 cut(s)	11, 487, 841, 934, 951, 982
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	4 cut(s)	395, 462, 815, 855
DpnI	GATC	6 cut(s)	345, 527, 932, 1092, 1096, 1102
DpnII	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	981
Eco24I	GRGCYC	2 cut(s)	142, 814
Eco52I	CGGCCG	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	987
Eco91I	GGTNACC	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	981
EcoT22I	ATGCAT	1 cut(s)	392
EcoT38I	GRGCYC	2 cut(s)	142, 814
ErhI	CCWWGG	1 cut(s)	981
FaeI	CATG	6 cut(s)	14, 490, 844, 937, 954, 985
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	6 cut(s)	10, 486, 840, 933, 950, 981
FbaI	TGATCA	1 cut(s)	930
FokI	GGATG	4 cut(s)	377, 938, 967, 1004
FriOI	GRGCYC	2 cut(s)	142, 814
FspBI	CTAG	4 cut(s)	222, 822, 860, 899
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	3 cut(s)	183, 644, 986
HapII	CCGG	3 cut(s)	180, 638, 988
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	798
Hin1II	CATG	6 cut(s)	14, 490, 844, 937, 954, 985
HinfI	GANTC	7 cut(s)	73, 176, 204, 350, 611, 658, 731
HpaII	CCGG	3 cut(s)	180, 638, 988
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	4 cut(s)	46, 865, 997, 1078
Hpy188I	TCNGA	3 cut(s)	114, 337, 590
Hpy188III	TCNNGA	4 cut(s)	347, 744, 822, 1098
Hpy8I	GTNNAC	4 cut(s)	46, 865, 997, 1078
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	4 cut(s)	8, 502, 911, 915
HpyCH4III	ACNGT	2 cut(s)	43, 709
HpyCH4IV	ACGT	2 cut(s)	627, 798
HpyCH4V	TGCA	9 cut(s)	4, 245, 267, 390, 407, 621, 865, 887, 908
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 89, 92, 137, 338, 396, 758
HpyF3I	CTNAG	4 cut(s)	395, 462, 815, 855
HpySE526I	ACGT	2 cut(s)	627, 798
Hsp92I	GRCGYC	1 cut(s)	798
Hsp92II	CATG	6 cut(s)	14, 490, 844, 937, 954, 985
Ksp22I	TGATCA	1 cut(s)	930
Kzo9I	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
LmnI	GCTCC	5 cut(s)	145, 417, 535, 746, 849
LweI	GCATC	8 cut(s)	232, 377, 399, 748, 769, 871, 896, 945
MaeI	CTAG	4 cut(s)	222, 822, 860, 899
MaeII	ACGT	2 cut(s)	627, 798
MaeIII	GTNAC	3 cut(s)	827, 901, 1025
MalI	GATC	6 cut(s)	345, 527, 932, 1092, 1096, 1102
MboI	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
MboII	GAAGA	4 cut(s)	320, 478, 662, 1052
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	4 cut(s)	142, 257, 814, 867
MluCI	AATT	3 cut(s)	234, 364, 377
MlyI	GAGTC	2 cut(s)	667, 740
MmeI	TCCRAC	2 cut(s)	92, 169
MnlI	CCTC	9 cut(s)	47, 162, 516, 648, 722, 766, 818, 1030, 1081
Mph1103I	ATGCAT	1 cut(s)	392
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	1 cut(s)	912
MslI	CAYNNNNRTG	2 cut(s)	15, 626
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	3 cut(s)	180, 638, 988
MspR9I	CCNGG	3 cut(s)	505, 988, 989
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	7 cut(s)	86, 89, 92, 137, 338, 396, 758
NciI	CCSGG	2 cut(s)	988, 989
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
NlaIII	CATG	6 cut(s)	14, 490, 844, 937, 954, 985
NlaIV	GGNNCC	2 cut(s)	419, 1048
NmuCI	GTSAC	2 cut(s)	827, 901
NsiI	ATGCAT	1 cut(s)	392
NspI	RCATGY	1 cut(s)	844
OliI	CACNNNNGTG	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	5 cut(s)	73, 176, 204, 350, 611
PleI	GAGTC	2 cut(s)	666, 739
PpsI	GAGTC	2 cut(s)	666, 739
PshAI	GACNNNNGTC	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	503
PspEI	GGTNACC	1 cut(s)	827
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	419, 1048
PspPI	GGNCC	2 cut(s)	643, 985
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	15, 626
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	912
Sau3AI	GATC	6 cut(s)	343, 525, 930, 1090, 1094, 1100
Sau96I	GGNCC	2 cut(s)	643, 985
SchI	GAGTC	2 cut(s)	667, 740
ScrFI	CCNGG	3 cut(s)	505, 988, 989
SduI	GDGCHC	4 cut(s)	142, 257, 814, 867
SfaNI	GCATC	8 cut(s)	232, 377, 399, 748, 769, 871, 896, 945
SfcI	CTRYAG	1 cut(s)	1009
SmaI	CCCGGG	1 cut(s)	989
SmiMI	CAYNNNNRTG	2 cut(s)	15, 626
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	234, 364, 377
SsiI	CCGC	2 cut(s)	184, 1006
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	4 cut(s)	222, 822, 860, 899
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	503, 986, 987
StyI	CCWWGG	1 cut(s)	981
TaaI	ACNGT	2 cut(s)	43, 709
TaiI	ACGT	2 cut(s)	630, 801
TaqI	TCGA	2 cut(s)	198, 1093
TasI	AATT	3 cut(s)	234, 364, 377
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	2 cut(s)	186, 1008
TfiI	GAWTC	5 cut(s)	73, 176, 204, 350, 611
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	2 cut(s)	827, 901
Tsp45I	GTSAC	2 cut(s)	827, 901
TspDTI	ATGAA	7 cut(s)	27, 390, 401, 588, 593, 647, 930
TspGWI	ACGGA	3 cut(s)	175, 188, 638
TspMI	CCCGGG	1 cut(s)	987
TspRI	CASTG	1 cut(s)	712
VneI	GTGCAC	1 cut(s)	863
XapI	RAATTY	3 cut(s)	234, 364, 377
XbaI	TCTAGA	1 cut(s)	821
XceI	RCATGY	1 cut(s)	844
XmaI	CCCGGG	1 cut(s)	987
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	4 cut(s)	222, 822, 860, 899
ZraI	GACGTC	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.