Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513681.1

Orthogroup ID

OG0007045

Physical Location & Seq

Genomic Coordinates Forward (+)

70 .. 2742

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgtgcaagttggcatatgactacttgaaaaactccgaagggtgtaaagacagcatctacgagtatttcgcttccgaagaagatgcagagtctgtgtacatcgagtttacagaagaattggatcgatgcatccttggttattttgcgtttcattggagtcaaacttctcatatgattagccaggtttttgatgtggaatctgagaggagaacgaagctcaaagactatgtacttgcagctaccaggaaacagagatttgagaggataagcaaggacctaaaggtgacaagggtgttctctactttggtagaggaaatgaaagtaattggcaacacatcaaaatgcacagaagtaatgaagcctttggcacatagtgagaggagccctgtgctccttctcatgggtggtggaatgggagctggcaaaagcactgtcctcaaagacattctcaaagaggcattctggacagaagccaagaaaaatgcggtagttgtagaggcagacgctttcaaggagacggatgttctttacagagcgttaagcctgaaaggtcaccatcatgacatgctccaatctgctgaattggtgcaccaatcatccaccgatgctgcatcgtccctcctagtgactgcactcaacgaaggacgggatgtgatcatggatggcactctatcatgggcaccctttgttgatcagacaatagcaatggcccgaaatgttcacaagtgccgttaccggatgggagttggatacaaggtggctgatgatggcaccatcactgaaaattattgggaacaagtaagtcaagaagaagaggatgagcatcaaaagttagaaaaaggagggaaaccccacagaaaaccgtacagaatagagttggttggagtggtttgtgatgcttatttagctgttattagaggcattaggagagctataatgattcatagggcagtgagggtaaattcacagattcaatcccaccagagatttgctaaatcatttactggatattgccagcttgtcgataatgccaggctctactgcactaatgctatggctggccctcctaagctgataggatggaagaatggagataacaacctgctagtggatccgaaagaaatcaaatgcttgacagacttgagcaatttgaactctaaagccgattcgatttacgagctttacacgcacaacccgggccttatactggaacctggttctgtttggaaagaagctgttttgtcccctgcaaggccaagcattcagcgcaagctaaaggcttgcattcaaagaattgaaatttcaagtattactgctgacgaattaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zeta_toxin

Protein Analysis

443

Amino Acids

50.06

Weight (kDa)

6.69

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04280 AT1G04280
fragaria_vesca	FvH4_4g02640 FvH4_4g02640 FvH4_4g02640 FvH4_4g02640 FvH4_4g02640
malus_domestica	MD13G1207100.v1.1
prunus_persica	Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1 Prupe.1G030700_v2.0.a1
pyrus_communis	pycom05g19030 pycom13g17950 pycom16g17580
rosa_chinensis	RchiOBHm_Chr4g0390501
rosa_laevigata	RLG00000009920
rosa_multiflora	Rmu_co8513681.1_g000001 Rmu_sc0013467.1_g000007
rosa_roxburghii	Rroxscaffold_5G00336500
rosa_rugosa	Rorug03G0330900
rosa_samantha	Rh4AG032300 Rh4BG026300 Rh4DG028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1110
AccB1I	GGYRCC	2 cut(s)	679, 770
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	129, 1106, 1119
AcsI	RAATTY	2 cut(s)	961, 1299
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	98, 231, 866
AfiI	CCNNNNNNNGG	4 cut(s)	400, 1108, 1207, 1251
AgsI	TTSAA	7 cut(s)	28, 511, 974, 1153, 1289, 1298, 1305
AjnI	CCWGG	4 cut(s)	180, 242, 1031, 1213
Alw21I	GWGCWC	2 cut(s)	393, 591
Alw26I	GTCTC	1 cut(s)	509
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	3 cut(s)	129, 1106, 1119
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	1195
AoxI	GGCC	4 cut(s)	708, 1060, 1198, 1253
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	2 cut(s)	236, 608
ApoI	RAATTY	2 cut(s)	961, 1299
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
AspLEI	GCGC	1 cut(s)	1269
AspS9I	GGNCC	4 cut(s)	274, 709, 1061, 1198
AsuC2I	CCSGG	2 cut(s)	1196, 1197
AsuHPI	GGTGA	2 cut(s)	295, 545
AvaI	CYCGRG	1 cut(s)	1195
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	591, 682
BamHI	GGATCC	1 cut(s)	1111
BanI	GGYRCC	2 cut(s)	679, 770
BanII	GRGCYC	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	393, 591
BbvI	GCAGC	2 cut(s)	248, 595
BccI	CCATC	6 cut(s)	564, 656, 733, 761, 782, 1074
BceAI	ACGGC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	4 cut(s)	182, 244, 1033, 1215
BciVI	GTATCC	1 cut(s)	743
BclI	TGATCA	2 cut(s)	654, 691
BcnI	CCSGG	2 cut(s)	1196, 1197
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	623, 1106
BfuAI	ACCTGC	1 cut(s)	1110
BfuI	GTATCC	1 cut(s)	743
BisI	GCNGC	2 cut(s)	237, 609
BlsI	GCNGC	2 cut(s)	238, 610
Bme1390I	CCNGG	6 cut(s)	182, 244, 1033, 1196, 1197, 1215
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	1195
BmgT120I	GGNCC	4 cut(s)	274, 709, 1061, 1198
BmiI	GGNNCC	5 cut(s)	383, 681, 772, 1113, 1212
BmrFI	CCNGG	6 cut(s)	182, 244, 1033, 1196, 1197, 1215
BmsI	GCATC	8 cut(s)	63, 73, 116, 138, 595, 620, 832, 886
Bpu10I	CCTNAGC	1 cut(s)	1068
BpuEI	CTTGAG	1 cut(s)	1162
BpuMI	CCSGG	2 cut(s)	1196, 1197
Bsa29I	ATCGAT	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	2 cut(s)	133, 1195
BsaWI	WCCGGW	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 1108, 1207, 1251
Bse1I	ACTGG	2 cut(s)	1009, 1212
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	4 cut(s)	182, 244, 1033, 1215
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	133, 1195
BseGI	GGATG	8 cut(s)	129, 526, 596, 655, 667, 744, 823, 1085
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	4 cut(s)	400, 1108, 1207, 1251
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	1009, 1212
BseRI	GAGGAG	2 cut(s)	220, 394
BseSI	GKGCMC	2 cut(s)	591, 682
BseXI	GCAGC	2 cut(s)	248, 595
BsgI	GTGCAG	2 cut(s)	615, 1027
BshFI	GGCC	4 cut(s)	710, 1062, 1200, 1255
BshNI	GGYRCC	2 cut(s)	679, 770
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	393, 591
BsiHKCI	CYCGRG	1 cut(s)	1195
BsiSI	CCGG	2 cut(s)	736, 1196
BslFI	GGGAC	2 cut(s)	601, 1228
BslI	CCNNNNNNNGG	4 cut(s)	400, 1108, 1207, 1251
BsmAI	GTCTC	1 cut(s)	509
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	601, 1228
BsmI	GAATGC	3 cut(s)	458, 1260, 1284
BsnI	GGCC	4 cut(s)	710, 1062, 1200, 1255
BsoBI	CYCGRG	1 cut(s)	1195
Bsp1286I	GDGCHC	4 cut(s)	386, 393, 591, 682
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	121, 654, 691, 1111
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	4 cut(s)	710, 1062, 1200, 1255
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	5 cut(s)	383, 681, 772, 1113, 1212
BspMI	ACCTGC	1 cut(s)	1110
BspPI	GGATC	3 cut(s)	129, 1106, 1119
BspT107I	GGYRCC	2 cut(s)	679, 770
BsrDI	GCAATG	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	1009, 1212
BssECI	CCNNGG	2 cut(s)	133, 1195
BssMI	GATC	4 cut(s)	121, 654, 691, 1111
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	4 cut(s)	182, 244, 1033, 1215
Bst4CI	ACNGT	2 cut(s)	433, 864
Bst6I	CTCTTC	1 cut(s)	807
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	421, 1016, 1060, 1271, 1282
BstDEI	CTNAG	2 cut(s)	201, 1068
BstEII	GGTNACC	1 cut(s)	551
BstF5I	GGATG	8 cut(s)	129, 526, 596, 655, 667, 744, 823, 1085
BstHHI	GCGC	1 cut(s)	1269
BstKTI	GATC	4 cut(s)	124, 657, 694, 1114
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	4 cut(s)	121, 654, 691, 1111
BstMWI	GCNNNNNNNGC	3 cut(s)	905, 1186, 1266
BstNI	CCWGG	4 cut(s)	182, 244, 1033, 1215
BstNSI	RCATGY	1 cut(s)	568
BstPI	GGTNACC	1 cut(s)	551
BstSCI	CCNGG	6 cut(s)	180, 242, 1031, 1194, 1195, 1213
BstSLI	GKGCMC	2 cut(s)	591, 682
BstV1I	GCAGC	2 cut(s)	248, 595
BstX2I	RGATCY	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	1111
Bsu15I	ATCGAT	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	4 cut(s)	710, 1062, 1200, 1255
BsuTUI	ATCGAT	1 cut(s)	124
BtsCI	GGATG	8 cut(s)	129, 526, 596, 655, 667, 744, 823, 1085
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	3 cut(s)	429, 777, 957
BveI	ACCTGC	1 cut(s)	1110
Cac8I	GCNNGC	5 cut(s)	421, 1016, 1060, 1271, 1282
CaiI	CAGNNNCTG	1 cut(s)	92
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	1269
Cfr13I	GGNCC	4 cut(s)	274, 709, 1061, 1198
Cfr9I	CCCGGG	1 cut(s)	1195
ClaI	ATCGAT	1 cut(s)	124
CseI	GACGC	1 cut(s)	512
CsiI	ACCWGGT	1 cut(s)	1213
Csp6I	GTAC	3 cut(s)	97, 230, 865
CviAII	CATG	5 cut(s)	400, 560, 565, 658, 675
CviQI	GTAC	3 cut(s)	97, 230, 865
DdeI	CTNAG	2 cut(s)	201, 1068
DpnI	GATC	4 cut(s)	123, 656, 693, 1113
DpnII	GATC	4 cut(s)	121, 654, 691, 1111
DraIII	CACNNNGTG	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	1195
Eco91I	GGTNACC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	551
EcoRII	CCWGG	4 cut(s)	180, 242, 1031, 1213
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	5 cut(s)	403, 563, 568, 661, 678
FaqI	GGGAC	2 cut(s)	601, 1228
FatI	CATG	5 cut(s)	399, 559, 564, 657, 674
FauNDI	CATATG	2 cut(s)	16, 171
FbaI	TGATCA	2 cut(s)	654, 691
Fnu4HI	GCNGC	2 cut(s)	237, 609
FokI	GGATG	8 cut(s)	116, 533, 583, 662, 674, 751, 830, 1092
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	237, 609
FspBI	CTAG	2 cut(s)	623, 1106
GlaI	GCGC	1 cut(s)	1268
GluI	GCNGC	2 cut(s)	237, 609
HaeIII	GGCC	4 cut(s)	710, 1062, 1200, 1255
HapII	CCGG	2 cut(s)	736, 1196
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	1269
Hin1II	CATG	5 cut(s)	403, 563, 568, 661, 678
Hin6I	GCGC	1 cut(s)	1267
HinP1I	GCGC	1 cut(s)	1267
HinfI	GANTC	6 cut(s)	89, 157, 197, 940, 970, 1166
HpaII	CCGG	2 cut(s)	736, 1196
HphI	GGTGA	2 cut(s)	295, 545
Hpy166II	GTNNAC	4 cut(s)	97, 108, 589, 721
Hpy188I	TCNGA	5 cut(s)	37, 76, 202, 696, 1116
Hpy188III	TCNNGA	3 cut(s)	463, 560, 806
Hpy8I	GTNNAC	4 cut(s)	97, 108, 589, 721
HpyAV	CCTTC	3 cut(s)	32, 404, 635
HpyCH4III	ACNGT	2 cut(s)	433, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	905, 1186, 1266
HpyF3I	CTNAG	2 cut(s)	201, 1068
Hsp92II	CATG	5 cut(s)	403, 563, 568, 661, 678
HspAI	GCGC	1 cut(s)	1267
Ksp22I	TGATCA	2 cut(s)	654, 691
Kzo9I	GATC	4 cut(s)	121, 654, 691, 1111
LmnI	GCTCC	4 cut(s)	381, 396, 416, 573
Lsp1109I	GCAGC	2 cut(s)	248, 595
LweI	GCATC	8 cut(s)	63, 73, 116, 138, 595, 620, 832, 886
MabI	ACCWGGT	1 cut(s)	1213
MaeI	CTAG	2 cut(s)	623, 1106
MaeIII	GTNAC	4 cut(s)	283, 551, 625, 731
MalI	GATC	4 cut(s)	123, 656, 693, 1113
MboI	GATC	4 cut(s)	121, 654, 691, 1111
MboII	GAAGA	6 cut(s)	89, 92, 125, 821, 824, 1096
MflI	RGATCY	1 cut(s)	1111
MhlI	GDGCHC	4 cut(s)	386, 393, 591, 682
MluCI	AATT	9 cut(s)	116, 324, 581, 784, 961, 1147, 1293, 1299, 1322
MlyI	GAGTC	2 cut(s)	98, 166
MmeI	TCCRAC	2 cut(s)	727, 862
Mph1103I	ATGCAT	1 cut(s)	131
MseI	TTAA	3 cut(s)	539, 1325, 1330
MslI	CAYNNNNRTG	2 cut(s)	340, 558
MspI	CCGG	2 cut(s)	736, 1196
MspR9I	CCNGG	6 cut(s)	182, 244, 1033, 1196, 1197, 1215
Mva1269I	GAATGC	3 cut(s)	458, 1260, 1284
MvaI	CCWGG	4 cut(s)	182, 244, 1033, 1215
MwoI	GCNNNNNNNGC	3 cut(s)	905, 1186, 1266
NciI	CCSGG	2 cut(s)	1196, 1197
NdeI	CATATG	2 cut(s)	16, 171
NdeII	GATC	4 cut(s)	121, 654, 691, 1111
NlaIII	CATG	5 cut(s)	403, 563, 568, 661, 678
NlaIV	GGNNCC	5 cut(s)	383, 681, 772, 1113, 1212
NmuCI	GTSAC	3 cut(s)	283, 551, 625
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	1 cut(s)	568
PagI	TCATGA	1 cut(s)	559
PctI	GAATGC	3 cut(s)	458, 1260, 1284
PfeI	GAWTC	4 cut(s)	197, 940, 970, 1166
PkrI	GCNGC	2 cut(s)	238, 610
PleI	GAGTC	2 cut(s)	97, 165
PpsI	GAGTC	2 cut(s)	97, 165
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	4 cut(s)	180, 242, 1031, 1213
PspEI	GGTNACC	1 cut(s)	551
PspGI	CCWGG	4 cut(s)	180, 242, 1031, 1213
PspN4I	GGNNCC	5 cut(s)	383, 681, 772, 1113, 1212
PspPI	GGNCC	4 cut(s)	274, 709, 1061, 1198
PspPPI	RGGWCCY	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	1111
RsaI	GTAC	3 cut(s)	98, 231, 866
RsaNI	GTAC	3 cut(s)	97, 230, 865
RseI	CAYNNNNRTG	2 cut(s)	340, 558
SaqAI	TTAA	3 cut(s)	539, 1325, 1330
SatI	GCNGC	2 cut(s)	237, 609
Sau3AI	GATC	4 cut(s)	121, 654, 691, 1111
Sau96I	GGNCC	4 cut(s)	274, 709, 1061, 1198
SchI	GAGTC	2 cut(s)	98, 166
ScrFI	CCNGG	6 cut(s)	182, 244, 1033, 1196, 1197, 1215
SduI	GDGCHC	4 cut(s)	386, 393, 591, 682
SexAI	ACCWGGT	1 cut(s)	1213
SfaNI	GCATC	8 cut(s)	63, 73, 116, 138, 595, 620, 832, 886
SinI	GGWCC	1 cut(s)	274
SmaI	CCCGGG	1 cut(s)	1197
SmiMI	CAYNNNNRTG	2 cut(s)	340, 558
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
Sse9I	AATT	9 cut(s)	116, 324, 581, 784, 961, 1147, 1293, 1299, 1322
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	623, 1106
StyD4I	CCNGG	6 cut(s)	180, 242, 1031, 1194, 1195, 1213
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	433, 864
TaqI	TCGA	4 cut(s)	102, 124, 1023, 1169
TasI	AATT	9 cut(s)	116, 324, 581, 784, 961, 1147, 1293, 1299, 1322
TatI	WGTACW	2 cut(s)	96, 229
TfiI	GAWTC	4 cut(s)	197, 940, 970, 1166
Tru1I	TTAA	3 cut(s)	539, 1325, 1330
Tru9I	TTAA	3 cut(s)	539, 1325, 1330
TscAI	CASTG	3 cut(s)	436, 784, 957
TseFI	GTSAC	3 cut(s)	283, 551, 625
TseI	GCWGC	2 cut(s)	236, 608
Tsp45I	GTSAC	3 cut(s)	283, 551, 625
TspDTI	ATGAA	4 cut(s)	140, 332, 371, 932
TspGWI	ACGGA	1 cut(s)	533
TspMI	CCCGGG	1 cut(s)	1195
TspRI	CASTG	3 cut(s)	436, 784, 957
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	961, 1299
XceI	RCATGY	1 cut(s)	568
XmaI	CCCGGG	1 cut(s)	1195
XspI	CTAG	2 cut(s)	623, 1106
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.