Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004573

Physical Location & Seq

Genomic Coordinates Forward (+)

16456031 .. 16458776

Gene Structure 2746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATGGTTATTGAGGGCAACCATGAGATTGAGCCCCAAGCTTCTGGAATCACTTTCGAATCCTATTTGACTAGATTTGCAGTGCCATCAGATGAATCCGGCTCTAAAAGTAACTTCTACTATTCTTTTGATGCTGGAGGAGTACATTTTATCATGTTGGGAGCATATATTGACTACAATGCTACTGGTGCTCAATATGCTTGGCTTAAAGATGATCTACATCGAGTAGACCGTACAGTGACTCCCTGGCTCGTGGCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTTCTCACTATCAGGAATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTTTATCAATACGGTGTTGATATTGTGTTTTCTGGTCATGTGCATGCCTACGAACGGATGAATAGAGTATATAACTATACGTTGGATCCGTGCGGGCCTCTTTACATAACAGTTGGAGATGGTGGAAATATTGAAGAAGTTGATGTTGATTTCGCTGATGACCCTGGAAAGTGTCCTTCAGCTGGAGACAACACACCGGAGTTTGGAGGGGTATGCCATTTGAACTTTTCTTCAGGGCCTGCTAAAGGCAACTTTTGTTGGAGCAAACAGCCGGAGTGGAGTGCTTTTAGAGAAAGCAGCTTTGGGCATGGAATTCTTGAGGTGGTGAATTCTACTTATGCTCTATGGACTTGGCATCGGAATCAAGATATGTATAAGGAAGATAGCCATGGTGATCAAGTATACGTTGTGCGACAACCTGAACTGTGCTCACGGTCTGCAAAGCCCTTGGTTACCCCCCCCTCTGTGCCCTCCCTCTCTGCTGCATTGCACTCTCTGGTGCTCTCTCTATCCTTGCCACTCTTTGGAATTGATACTGCTGGTGGAGGAGGGAGGGGATTGGTATTGAAGACAATTAAAAATCGGCTGCGGAAATCAAACACAAGACTAGACCTCAAATGCAAAGAAGAAGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

326

Amino Acids

36.35

Weight (kDa)

5.34

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	2 - 130	7.4e-13	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	198 - 237	2e-11	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13700 AT4G13700
fragaria_vesca	FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910
malus_domestica	MD13G1231100.v1.1
prunus_persica	Prupe.1G061000_v2.0.a1 Prupe.1G061000_v2.0.a1
pyrus_communis	pycom13g20390
rosa_chinensis	RchiOBHm_Chr7g0223541 RchiOBHm_Chr7g0223651
rosa_laevigata	RLG00000001956
rosa_multiflora	Rmu_sc0002224.1_g000017
rosa_roxburghii	Rroxscaffold_3G00235490 Rroxscaffold_3G00235620
rosa_rugosa	Rorug07G0218100 Rorug07G0218700
rosa_samantha	Rh7AG361300 Rh7BG352800 Rh7CG379800 Rh7DG356700
rosa_wichuraiana	Rw7G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccI	GTMKAC	2 cut(s)	228, 741
AciI	CCGC	2 cut(s)	432, 928
AclWI	GGATC	2 cut(s)	419, 432
AcsI	RAATTY	3 cut(s)	305, 651, 667
AcuI	CTGAAG	2 cut(s)	501, 555
AfaI	GTAC	2 cut(s)	144, 235
AfiI	CCNNNNNNNGG	5 cut(s)	393, 521, 542, 584, 863
AgsI	TTSAA	4 cut(s)	311, 473, 562, 907
AjnI	CCWGG	2 cut(s)	245, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	4 cut(s)	41, 285, 521, 639
AluI	AGCT	4 cut(s)	41, 285, 521, 639
Alw21I	GWGCWC	3 cut(s)	193, 770, 843
Alw26I	GTCTC	2 cut(s)	313, 519
AlwI	GGATC	2 cut(s)	419, 432
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	2 cut(s)	434, 575
ApeKI	GCWGC	4 cut(s)	257, 636, 821, 925
ApoI	RAATTY	3 cut(s)	305, 651, 667
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	434, 575
AsuHPI	GGTGA	2 cut(s)	676, 743
AsuII	TTCGAA	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	810
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	3 cut(s)	193, 770, 843
BbvI	GCAGC	4 cut(s)	269, 648, 808, 912
BccI	CCATC	2 cut(s)	94, 452
BciT130I	CCWGG	2 cut(s)	247, 504
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	313, 519
BfaI	CTAG	2 cut(s)	72, 947
BisI	GCNGC	4 cut(s)	258, 637, 822, 926
BlsI	GCNGC	4 cut(s)	259, 638, 823, 927
Bme1390I	CCNGG	2 cut(s)	247, 504
BmgT120I	GGNCC	2 cut(s)	434, 575
BmiI	GGNNCC	2 cut(s)	266, 426
BmrFI	CCNGG	2 cut(s)	247, 504
BmsI	GCATC	2 cut(s)	121, 703
BpiI	GAAGAC	1 cut(s)	914
BpmI	CTGGAG	2 cut(s)	156, 543
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	5 cut(s)	245, 272, 502, 727, 786
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	5 cut(s)	393, 521, 542, 584, 863
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	824
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	247, 504
BseDI	CCNNGG	5 cut(s)	245, 272, 502, 727, 786
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	5 cut(s)	393, 521, 542, 584, 863
BseMI	GCAATG	1 cut(s)	824
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	153, 900
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	4 cut(s)	269, 648, 808, 912
BshFI	GGCC	2 cut(s)	436, 577
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	3 cut(s)	193, 770, 843
BsiSI	CCGG	3 cut(s)	99, 536, 611
BslI	CCNNNNNNNGG	5 cut(s)	393, 521, 542, 584, 863
BsmAI	GTCTC	2 cut(s)	313, 519
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	436, 577
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	5 cut(s)	36, 193, 770, 810, 843
Bsp143I	GATC	3 cut(s)	214, 424, 733
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	2 cut(s)	432, 928
BspANI	GGCC	2 cut(s)	436, 577
BspLI	GGNNCC	2 cut(s)	266, 426
BspPI	GGATC	2 cut(s)	419, 432
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	5 cut(s)	245, 272, 502, 727, 786
BssMI	GATC	3 cut(s)	214, 424, 733
BssNAI	GTATAC	1 cut(s)	742
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	3 cut(s)	272, 727, 786
Bst1107I	GTATAC	1 cut(s)	742
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	247, 504
Bst4CI	ACNGT	6 cut(s)	233, 238, 353, 451, 765, 774
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	384, 434, 579
BstDSI	CCRYGG	1 cut(s)	727
BstEII	GGTNACC	1 cut(s)	790
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	3 cut(s)	217, 427, 736
BstMAI	GTCTC	2 cut(s)	313, 519
BstMBI	GATC	3 cut(s)	214, 424, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstNI	CCWGG	2 cut(s)	247, 504
BstNSI	RCATGY	1 cut(s)	386
BstPI	GGTNACC	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	245, 502
BstSLI	GKGCMC	1 cut(s)	810
BstV1I	GCAGC	4 cut(s)	269, 648, 808, 912
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	436, 577
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 243
Cac8I	GCNNGC	3 cut(s)	384, 434, 579
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	434, 575
Csp6I	GTAC	2 cut(s)	143, 234
CviAII	CATG	8 cut(s)	23, 154, 261, 316, 377, 383, 647, 728
CviQI	GTAC	2 cut(s)	143, 234
DpnI	GATC	3 cut(s)	216, 426, 735
DpnII	GATC	3 cut(s)	214, 424, 733
Eco130I	CCWWGG	3 cut(s)	272, 727, 786
Eco24I	GRGCYC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	501, 555
Eco91I	GGTNACC	1 cut(s)	790
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	575
EcoO65I	GGTNACC	1 cut(s)	790
EcoRI	GAATTC	2 cut(s)	651, 667
EcoRII	CCWGG	2 cut(s)	245, 502
EcoT14I	CCWWGG	3 cut(s)	272, 727, 786
EcoT22I	ATGCAT	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	3 cut(s)	272, 727, 786
FaeI	CATG	8 cut(s)	26, 157, 264, 319, 380, 386, 650, 731
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	8 cut(s)	22, 153, 260, 315, 376, 382, 646, 727
FauI	CCCGC	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	733
FblI	GTMKAC	2 cut(s)	228, 741
Fnu4HI	GCNGC	4 cut(s)	258, 637, 822, 926
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	4 cut(s)	258, 637, 822, 926
FspBI	CTAG	2 cut(s)	72, 947
GluI	GCNGC	4 cut(s)	258, 637, 822, 926
GsuI	CTGGAG	2 cut(s)	156, 543
HaeIII	GGCC	2 cut(s)	436, 577
HapII	CCGG	3 cut(s)	99, 536, 611
Hin1II	CATG	8 cut(s)	26, 157, 264, 319, 380, 386, 650, 731
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	5 cut(s)	48, 59, 95, 241, 700
HpaII	CCGG	3 cut(s)	99, 536, 611
HphI	GGTGA	2 cut(s)	676, 743
Hpy166II	GTNNAC	2 cut(s)	229, 742
Hpy188I	TCNGA	2 cut(s)	91, 699
Hpy188III	TCNNGA	5 cut(s)	45, 302, 656, 704, 975
Hpy8I	GTNNAC	2 cut(s)	229, 742
HpyAV	CCTTC	2 cut(s)	525, 962
HpyCH4III	ACNGT	6 cut(s)	233, 238, 353, 451, 765, 774
HpyCH4IV	ACGT	2 cut(s)	419, 744
HpyCH4V	TGCA	7 cut(s)	80, 315, 382, 779, 824, 829, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpySE526I	ACGT	2 cut(s)	419, 744
Hsp92II	CATG	8 cut(s)	26, 157, 264, 319, 380, 386, 650, 731
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	214, 424, 733
LmnI	GCTCC	2 cut(s)	161, 600
Lsp1109I	GCAGC	4 cut(s)	269, 648, 808, 912
LweI	GCATC	2 cut(s)	121, 703
MaeI	CTAG	2 cut(s)	72, 947
MaeII	ACGT	2 cut(s)	419, 744
MaeIII	GTNAC	3 cut(s)	110, 238, 790
MalI	GATC	3 cut(s)	216, 426, 735
MboI	GATC	3 cut(s)	214, 424, 733
MboII	GAAGA	6 cut(s)	282, 485, 561, 731, 919, 977
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	5 cut(s)	36, 193, 770, 810, 843
MluCI	AATT	5 cut(s)	305, 651, 667, 867, 912
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	3 cut(s)	402, 433, 578
Mph1103I	ATGCAT	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	207, 915
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	3 cut(s)	99, 536, 611
MspR9I	CCNGG	2 cut(s)	247, 504
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	247, 504
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	3 cut(s)	214, 424, 733
NlaIII	CATG	8 cut(s)	26, 157, 264, 319, 380, 386, 650, 731
NlaIV	GGNNCC	2 cut(s)	266, 426
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	317
NspI	RCATGY	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	2 cut(s)	229, 425
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	48, 59, 95, 700
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	4 cut(s)	259, 638, 823, 927
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	245, 502
PspEI	GGTNACC	1 cut(s)	790
PspGI	CCWGG	2 cut(s)	245, 502
PspN4I	GGNNCC	2 cut(s)	266, 426
PspPI	GGNCC	2 cut(s)	434, 575
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	144, 235
RsaNI	GTAC	2 cut(s)	143, 234
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	207, 915
SatI	GCNGC	4 cut(s)	258, 637, 822, 926
Sau3AI	GATC	3 cut(s)	214, 424, 733
Sau96I	GGNCC	2 cut(s)	434, 575
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	247, 504
SduI	GDGCHC	5 cut(s)	36, 193, 770, 810, 843
SetI	ASST	9 cut(s)	43, 287, 422, 523, 641, 663, 747, 760, 954
SfaNI	GCATC	2 cut(s)	121, 703
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	5 cut(s)	305, 651, 667, 867, 912
SsiI	CCGC	2 cut(s)	432, 928
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	72, 947
StyD4I	CCNGG	2 cut(s)	245, 502
StyI	CCWWGG	3 cut(s)	272, 727, 786
TaaI	ACNGT	6 cut(s)	233, 238, 353, 451, 765, 774
TaiI	ACGT	2 cut(s)	422, 747
TaqI	TCGA	2 cut(s)	57, 223
TasI	AATT	5 cut(s)	305, 651, 667, 867, 912
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	4 cut(s)	48, 59, 95, 700
Tru1I	TTAA	2 cut(s)	207, 915
Tru9I	TTAA	2 cut(s)	207, 915
TscAI	CASTG	2 cut(s)	87, 243
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	257, 636, 821, 925
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	108, 413
TspGWI	ACGGA	2 cut(s)	409, 417
TspRI	CASTG	2 cut(s)	87, 243
Van91I	CCANNNNNTGG	1 cut(s)	863
XagI	CCTNNNNNAGG	1 cut(s)	582
XapI	RAATTY	3 cut(s)	305, 651, 667
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	2 cut(s)	228, 741
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	72, 947
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.