Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002224.1

Orthogroup ID

OG0004573

Physical Location & Seq

Genomic Coordinates Reverse (-)

72981 .. 78082

Gene Structure 5102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002224.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

atgcacaagtactgtaagctatggaggatcacttcactggttttgttcatggtaataaatatggtagtgggtagtgatcaggctcatcacatacccacaactctagaaggcccatttaagcctgcaactcggcgcttcgacccatcactccgaacaggcagcgatgacttgcccatggaccatcccaggctcaaaaagaatgtcaccctcaatttccctgaacaaatatctcttgcaatatcttcacctactgcaatgtgggtttcttgggttactggggatgcccagattgggaaaaatgtgacaccacttgatccttcaaaggttgagagtgaggtgtggtatggcaaaaagagtggcaagtatgatagtgtcaagaaaggggttgctgtggtttacagtcaattgtacccatttcaaggcctcttgaattacacttctggcatcattcatcatgtcaggattgatggtcttaaaccaggaacaaaatattattataagtgtggggatagctctatccctgccatgagtgaagagcaggcctttgaaactttaccattgcctagcccaaacacatatcctcgtcgaatagctgttattggagatttaggtctcacaagcaataccagtacaaccgttgaccatttgattcagaatgatccttcaatgattgtaatggttggagacttaacttatgcaaatcagtaccttacaactggtggtaaaggagcttcatgcttttcatgtgcattcccagatgcacctatcagagaaacataccaaccccgctgggatgcgtggggaagattcatgcagccattaacctcacaagttccaatgatggttattgagggaaaccatgagattgagccccaagttgctggaatcactttctcatcctatttggcaaggtttgcagttccatccgaggaatctggctcaaaaaccaacttctactactcttttgatgctggaggagtgcatttcatcatgttgggagcatatgttgattacaatgctactggttcacagtatgcttggcttaaagacgatctacatcgagtagaccggtcggtgaccccatggctggtagctgcatggcattcaccttggtataatagctactcttctcattatcaggaattcgagtgcatgagacaggaaatggaagcacttctttatcaatatggtgttgatattgttttctccggtcatgttcatgcttatgagcgtatgaatagagtatataactatacgttagatccatgtggacctgtttatataacagttggagatggtggcaatattgagaaagttgatgttgatttcgctgatgaccctggaaagtgtccttcagctggagacaacatacctgaatttggaggggtatgtcatctcaacttttcttctgggcctgctaaagggaagttttgttggaatgaacagccagagtggagtgcttttagagaaagcagctttggtcatggaatacttgaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

500

Amino Acids

55.94

Weight (kDa)

5.65

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13700 AT4G13700
fragaria_vesca	FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910
malus_domestica	MD13G1231100.v1.1
prunus_persica	Prupe.1G061000_v2.0.a1 Prupe.1G061000_v2.0.a1
pyrus_communis	pycom13g20390
rosa_chinensis	RchiOBHm_Chr7g0223541 RchiOBHm_Chr7g0223651
rosa_laevigata	RLG00000001956
rosa_multiflora	Rmu_sc0002224.1_g000017
rosa_roxburghii	Rroxscaffold_3G00235490 Rroxscaffold_3G00235620
rosa_rugosa	Rorug07G0218100 Rorug07G0218700
rosa_samantha	Rh7AG361300 Rh7BG352800 Rh7CG379800 Rh7DG356700
rosa_wichuraiana	Rw7G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	1065
AciI	CCGC	1 cut(s)	787
AclWI	GGATC	4 cut(s)	35, 308, 653, 1256
AcsI	RAATTY	2 cut(s)	1142, 1376
AcuI	CTGAAG	1 cut(s)	1338
AfaI	GTAC	4 cut(s)	11, 410, 631, 707
AfiI	CCNNNNNNNGG	6 cut(s)	291, 419, 1087, 1358, 1379, 1421
AgeI	ACCGGT	1 cut(s)	1068
AgsI	TTSAA	5 cut(s)	321, 419, 430, 548, 666
AjnI	CCWGG	3 cut(s)	185, 478, 1339
AjuI	GAANNNNNNNTTGG	2 cut(s)	1461, 1493
AluBI	AGCT	8 cut(s)	19, 513, 593, 731, 1094, 1122, 1358, 1476
AluI	AGCT	8 cut(s)	19, 513, 593, 731, 1094, 1122, 1358, 1476
Alw26I	GTCTC	4 cut(s)	617, 678, 1150, 1356
AlwI	GGATC	4 cut(s)	35, 308, 653, 1256
AoxI	GGCC	4 cut(s)	109, 421, 540, 1412
ApeKI	GCWGC	4 cut(s)	159, 814, 1094, 1473
ApoI	RAATTY	2 cut(s)	1142, 1376
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AsiGI	ACCGGT	1 cut(s)	1068
Asp700I	GAANNNNTTC	1 cut(s)	1173
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	4 cut(s)	110, 178, 1271, 1412
AsuHPI	GGTGA	4 cut(s)	196, 237, 1087, 1098
AvaII	GGWCC	2 cut(s)	178, 1271
BanII	GRGCYC	1 cut(s)	873
BarI	GAAGNNNNNNTAC	2 cut(s)	715, 747
BbvI	GCAGC	4 cut(s)	171, 826, 1081, 1485
BccI	CCATC	6 cut(s)	151, 189, 461, 835, 931, 1289
BciT130I	CCWGG	3 cut(s)	187, 480, 1341
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	4 cut(s)	617, 678, 1150, 1356
BfaI	CTAG	2 cut(s)	104, 564
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	4 cut(s)	160, 815, 1095, 1474
BlsI	GCNGC	4 cut(s)	161, 816, 1096, 1475
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	187, 480, 1341
Bme18I	GGWCC	2 cut(s)	178, 1271
BmgT120I	GGNCC	4 cut(s)	110, 178, 1271, 1412
BmrFI	CCNGG	3 cut(s)	187, 480, 1341
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	5 cut(s)	271, 453, 748, 784, 958
BmuI	ACTGGG	1 cut(s)	285
BpmI	CTGGAG	2 cut(s)	993, 1380
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	6 cut(s)	174, 185, 927, 1082, 1109, 1339
BsaWI	WCCGGW	2 cut(s)	1068, 1208
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	6 cut(s)	291, 419, 1087, 1358, 1379, 1421
Bse118I	RCCGGY	1 cut(s)	1068
Bse1I	ACTGG	5 cut(s)	42, 280, 627, 721, 1027
Bse3DI	GCAATG	2 cut(s)	261, 557
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	3 cut(s)	187, 480, 1341
BseDI	CCNNGG	6 cut(s)	174, 185, 927, 1082, 1109, 1339
BseGI	GGATG	5 cut(s)	181, 286, 799, 896, 923
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	6 cut(s)	291, 419, 1087, 1358, 1379, 1421
BseMI	GCAATG	2 cut(s)	261, 557
BseNI	ACTGG	5 cut(s)	42, 280, 627, 721, 1027
BseRI	GAGGAG	1 cut(s)	990
BseXI	GCAGC	4 cut(s)	171, 826, 1081, 1485
BseYI	CCCAGC	1 cut(s)	789
Bsh1285I	CGRYCG	1 cut(s)	1073
BshFI	GGCC	4 cut(s)	111, 423, 542, 1414
BshTI	ACCGGT	1 cut(s)	1068
BsiEI	CGRYCG	1 cut(s)	1073
BsiSI	CCGG	2 cut(s)	1069, 1209
BslI	CCNNNNNNNGG	6 cut(s)	291, 419, 1087, 1358, 1379, 1421
BsmAI	GTCTC	4 cut(s)	617, 678, 1150, 1356
BsmI	GAATGC	2 cut(s)	749, 1102
BsnI	GGCC	4 cut(s)	111, 423, 542, 1414
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
Bsp19I	CCATGG	2 cut(s)	174, 1082
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	4 cut(s)	111, 423, 542, 1414
BspPI	GGATC	4 cut(s)	35, 308, 653, 1256
BspQI	GCTCTTC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	261, 557
BsrFI	RCCGGY	1 cut(s)	1068
BsrI	ACTGG	5 cut(s)	42, 280, 627, 721, 1027
BssAI	RCCGGY	1 cut(s)	1068
BssECI	CCNNGG	6 cut(s)	174, 185, 927, 1082, 1109, 1339
BssMI	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
BssT1I	CCWWGG	3 cut(s)	174, 1082, 1109
Bst2UI	CCWGG	3 cut(s)	187, 480, 1341
Bst4CI	ACNGT	5 cut(s)	14, 401, 637, 1032, 1288
Bst6I	CTCTTC	2 cut(s)	528, 1132
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	3 cut(s)	123, 540, 1416
BstDSI	CCRYGG	2 cut(s)	174, 1082
BstEII	GGTNACC	1 cut(s)	1075
BstENI	CCTNNNNNAGG	1 cut(s)	1419
BstF5I	GGATG	5 cut(s)	181, 286, 799, 896, 923
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	6 cut(s)	30, 79, 316, 661, 1054, 1264
BstMAI	GTCTC	4 cut(s)	617, 678, 1150, 1356
BstMBI	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
BstMCI	CGRYCG	1 cut(s)	1073
BstMWI	GCNNNNNNNGC	1 cut(s)	914
BstNI	CCWGG	3 cut(s)	187, 480, 1341
BstPI	GGTNACC	1 cut(s)	1075
BstSCI	CCNGG	3 cut(s)	185, 478, 1339
BstV1I	GCAGC	4 cut(s)	171, 826, 1081, 1485
BstX2I	RGATCY	1 cut(s)	1261
BstXI	CCANNNNNNTGG	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	1261
BsuRI	GGCC	4 cut(s)	111, 423, 542, 1414
BtgI	CCRYGG	2 cut(s)	174, 1082
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	181, 286, 799, 896, 923
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	123, 540, 1416
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	1068
Cfr13I	GGNCC	4 cut(s)	110, 178, 1271, 1412
Csp6I	GTAC	4 cut(s)	10, 409, 630, 706
CspAI	ACCGGT	1 cut(s)	1068
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviQI	GTAC	4 cut(s)	10, 409, 630, 706
DpnI	GATC	6 cut(s)	29, 78, 315, 660, 1053, 1263
DpnII	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
Eam1104I	CTCTTC	2 cut(s)	528, 1132
EarI	CTCTTC	2 cut(s)	528, 1132
Eco130I	CCWWGG	3 cut(s)	174, 1082, 1109
Eco147I	AGGCCT	2 cut(s)	423, 542
Eco24I	GRGCYC	1 cut(s)	873
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	2 cut(s)	178, 1271
Eco57I	CTGAAG	1 cut(s)	1338
Eco91I	GGTNACC	1 cut(s)	1075
EcoNI	CCTNNNNNAGG	1 cut(s)	1419
EcoO65I	GGTNACC	1 cut(s)	1075
EcoRI	GAATTC	1 cut(s)	1142
EcoRII	CCWGG	3 cut(s)	185, 478, 1339
EcoT14I	CCWWGG	3 cut(s)	174, 1082, 1109
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	3 cut(s)	174, 1082, 1109
FalI	AAGNNNNNCTT	2 cut(s)	1161, 1193
FauI	CCCGC	1 cut(s)	794
FauNDI	CATATG	1 cut(s)	1003
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	1065
Fnu4HI	GCNGC	4 cut(s)	160, 815, 1095, 1474
FokI	GGATG	5 cut(s)	168, 293, 806, 883, 910
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	4 cut(s)	160, 815, 1095, 1474
FspBI	CTAG	2 cut(s)	104, 564
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	160, 815, 1095, 1474
GsaI	CCCAGC	1 cut(s)	793
GsuI	CTGGAG	2 cut(s)	993, 1380
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	4 cut(s)	111, 423, 542, 1414
HapII	CCGG	2 cut(s)	1069, 1209
HhaI	GCGC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	649, 807, 885, 932
HpaII	CCGG	2 cut(s)	1069, 1209
HphI	GGTGA	4 cut(s)	196, 237, 1087, 1098
Hpy166II	GTNNAC	5 cut(s)	397, 640, 1028, 1066, 1271
Hpy188I	TCNGA	4 cut(s)	152, 654, 770, 928
Hpy188III	TCNNGA	5 cut(s)	104, 376, 427, 460, 1139
Hpy8I	GTNNAC	5 cut(s)	397, 640, 1028, 1066, 1271
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	4 cut(s)	101, 327, 672, 1362
HpyCH4III	ACNGT	5 cut(s)	14, 401, 637, 1032, 1288
HpyCH4IV	ACGT	1 cut(s)	1256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	914
HpySE526I	ACGT	1 cut(s)	1256
HspAI	GCGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	2 cut(s)	728, 998
Lsp1109I	GCAGC	4 cut(s)	171, 826, 1081, 1485
LweI	GCATC	5 cut(s)	271, 453, 748, 784, 958
MaeI	CTAG	2 cut(s)	104, 564
MaeII	ACGT	1 cut(s)	1256
MaeIII	GTNAC	4 cut(s)	202, 271, 301, 1075
MalI	GATC	6 cut(s)	29, 78, 315, 660, 1053, 1263
MboI	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
MboII	GAAGA	5 cut(s)	234, 545, 816, 1119, 1398
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	5 cut(s)	211, 404, 430, 1142, 1376
MmeI	TCCRAC	3 cut(s)	661, 1270, 1415
MroXI	GAANNNNTTC	1 cut(s)	1173
MseI	TTAA	5 cut(s)	117, 474, 689, 821, 1044
MslI	CAYNNNNRTG	2 cut(s)	1218, 1224
MspA1I	CMGCKG	2 cut(s)	789, 1358
MspI	CCGG	2 cut(s)	1069, 1209
MspR9I	CCNGG	3 cut(s)	187, 480, 1341
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	2 cut(s)	749, 1102
MvaI	CCWGG	3 cut(s)	187, 480, 1341
MwoI	GCNNNNNNNGC	1 cut(s)	914
NcoI	CCATGG	2 cut(s)	174, 1082
NdeI	CATATG	1 cut(s)	1003
NdeII	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	3 cut(s)	202, 301, 1075
PceI	AGGCCT	2 cut(s)	423, 542
PciSI	GCTCTTC	1 cut(s)	528
PctI	GAATGC	2 cut(s)	749, 1102
PdmI	GAANNNNTTC	1 cut(s)	1173
PfeI	GAWTC	4 cut(s)	649, 807, 885, 932
PinAI	ACCGGT	1 cut(s)	1068
PkrI	GCNGC	4 cut(s)	161, 816, 1096, 1475
PsiI	TTATAA	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	185, 478, 1339
PspEI	GGTNACC	1 cut(s)	1075
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	3 cut(s)	185, 478, 1339
PspPI	GGNCC	4 cut(s)	110, 178, 1271, 1412
PsuI	RGATCY	1 cut(s)	1261
PvuII	CAGCTG	1 cut(s)	1358
RsaI	GTAC	4 cut(s)	11, 410, 631, 707
RsaNI	GTAC	4 cut(s)	10, 409, 630, 706
RseI	CAYNNNNRTG	2 cut(s)	1218, 1224
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	5 cut(s)	117, 474, 689, 821, 1044
SatI	GCNGC	4 cut(s)	160, 815, 1095, 1474
Sau3AI	GATC	6 cut(s)	27, 76, 313, 658, 1051, 1261
Sau96I	GGNCC	4 cut(s)	110, 178, 1271, 1412
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	3 cut(s)	187, 480, 1341
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	5 cut(s)	271, 453, 748, 784, 958
SinI	GGWCC	2 cut(s)	178, 1271
SmiMI	CAYNNNNRTG	2 cut(s)	1218, 1224
SmlI	CTYRAG	1 cut(s)	1493
SmoI	CTYRAG	1 cut(s)	1493
Sse9I	AATT	5 cut(s)	211, 404, 430, 1142, 1376
SseBI	AGGCCT	2 cut(s)	423, 542
SsiI	CCGC	1 cut(s)	787
SspI	AATATT	2 cut(s)	491, 1306
SspMI	CTAG	2 cut(s)	104, 564
StuI	AGGCCT	2 cut(s)	423, 542
StyD4I	CCNGG	3 cut(s)	185, 478, 1339
StyI	CCWWGG	3 cut(s)	174, 1082, 1109
TaaI	ACNGT	5 cut(s)	14, 401, 637, 1032, 1288
TaiI	ACGT	1 cut(s)	1259
TaqI	TCGA	4 cut(s)	138, 586, 1060, 1146
TasI	AATT	5 cut(s)	211, 404, 430, 1142, 1376
TatI	WGTACW	2 cut(s)	9, 629
TfiI	GAWTC	4 cut(s)	649, 807, 885, 932
Tru1I	TTAA	5 cut(s)	117, 474, 689, 821, 1044
Tru9I	TTAA	5 cut(s)	117, 474, 689, 821, 1044
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	3 cut(s)	202, 301, 1075
TseI	GCWGC	4 cut(s)	159, 814, 1094, 1473
Tsp45I	GTSAC	3 cut(s)	202, 301, 1075
TspDTI	ATGAA	9 cut(s)	37, 440, 723, 732, 799, 976, 1208, 1250, 1455
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	2 cut(s)	178, 1271
XagI	CCTNNNNNAGG	1 cut(s)	1419
XapI	RAATTY	2 cut(s)	1142, 1376
XbaI	TCTAGA	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	1065
XmnI	GAANNNNTTC	1 cut(s)	1173
XspI	CTAG	2 cut(s)	104, 564
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.