Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004573

Physical Location & Seq

Genomic Coordinates Forward (+)

22698593 .. 22702279

Gene Structure 3687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTAATGAATATGGTGGTGGGTAGTGATCACATACCCACAACTCTAGAAGGCCCATTTAAGCCTGCAACTCGGCGCTTCGACCCATCACTCCGAACAGGCAGCGATGACTTGCCCATGGACCATCCCAGGCTCAAAAAGAATGTCACCCTCAATTTCCCTGAACAAATATCTCTTGCAATATCTTCACCTACTGCAATGTGGGTTTCTTGGGTTACTGGGGATGCCCAGATTGGGAAAAATGTGACACCACTTGATCCTTCAAAGGTTGGGAGTGAGGTGTGGTATGGCAAAAAGAGTGGCAAGTATAATAGTGTCAAAAAAGGGGTTGCTGTGGTTTACAGTCAATTGTACCCATTTCAAGGCCTCTTGAATTACACTTCTGGCATCATTCATCATGTCAGGATTGATGGTCTTAAACCAGGAACAAAATATTATTACAAGTGTGGGGATAGCTCTATCCCCGCCATGAGTGAAGAGCAGACCTTTGAAACTTTACCATTGCCTAGCCCAAACACATATCCTCATCGAATAGCTGTTATTGGAGATTTAGGTCTCACAAGCAATACCACTACAACTGTTGACCATTTGATTCAGAATGATCCTTCAATGATTGTAATGGTTGGAGACTTAAGTTATGCAAATCAGTACCTTACAACTGGTGGTAAAGGAGCTTCATGCTTTTCATGTGCATTCCCAGATGCACCTATCAGAGAAACATACCAACCCCGCTGGGATGGGTGGGGAAGATTCATGCAGCCATTAACCTCACGAGTTCCAATGATGGTTATTGAGGGAAACCATGAGATTGAGCCCCAAGTTGCTGGAATCACTTTCTCATCCTATTTGGCAAGGTTTGCGGTTCCATCCGAGGAATCTGGCTCTAAAACCAACTTCTACTACTCTTTTGATGCTGGAGGAGTGCATTTCATCATGTTGGGAGCATATGTTGATTACAATGCAACAGGTTCACAGTATGCTTGGCTTAAGGACGATCTACACCGAGTAGACCGGTCGGTGACCCCATGGCTGGTAGCTGCATGGCATTCACCTTGGTATAATAGCTACTCTTCTCATTATCAGGAATTCGAGTGCATGAGACAGGAAATGGAAGAACTTCTTTATCAATATGGTGTTGATATTGTTTTCTCCGGTCATGTAAGTTTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

390

Amino Acids

43.61

Weight (kDa)

5.83

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	54 - 165	4.4e-19	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	177 - 387	1.7e-20	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13700 AT4G13700
fragaria_vesca	FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910 FvH4_5g29910
malus_domestica	MD13G1231100.v1.1
prunus_persica	Prupe.1G061000_v2.0.a1 Prupe.1G061000_v2.0.a1
pyrus_communis	pycom13g20390
rosa_chinensis	RchiOBHm_Chr7g0223541 RchiOBHm_Chr7g0223651
rosa_laevigata	RLG00000001956
rosa_multiflora	Rmu_sc0002224.1_g000017
rosa_roxburghii	Rroxscaffold_3G00235490 Rroxscaffold_3G00235620
rosa_rugosa	Rorug07G0218100 Rorug07G0218700
rosa_samantha	Rh7AG361300 Rh7BG352800 Rh7CG379800 Rh7DG356700
rosa_wichuraiana	Rw7G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1008
AciI	CCGC	3 cut(s)	465, 730, 860
AclWI	GGATC	2 cut(s)	251, 596
AcsI	RAATTY	1 cut(s)	1085
AfaI	GTAC	2 cut(s)	353, 650
AfiI	CCNNNNNNNGG	3 cut(s)	234, 362, 1030
AflII	CTTAAG	2 cut(s)	631, 986
AgeI	ACCGGT	1 cut(s)	1011
AgsI	TTSAA	5 cut(s)	264, 362, 373, 491, 609
AjnI	CCWGG	2 cut(s)	128, 421
AluBI	AGCT	6 cut(s)	456, 536, 674, 1037, 1065, 1170
AluI	AGCT	6 cut(s)	456, 536, 674, 1037, 1065, 1170
Alw26I	GTCTC	3 cut(s)	560, 621, 1093
AlwI	GGATC	2 cut(s)	251, 596
AoxI	GGCC	2 cut(s)	52, 364
ApeKI	GCWGC	3 cut(s)	102, 757, 1037
ApoI	RAATTY	1 cut(s)	1085
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AsiGI	ACCGGT	1 cut(s)	1011
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	53, 121
AsuHPI	GGTGA	4 cut(s)	139, 180, 1030, 1041
AvaII	GGWCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	816
BarI	GAAGNNNNNNTAC	2 cut(s)	658, 690
BauI	CACGAG	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	114, 769, 1024
BccI	CCATC	6 cut(s)	94, 132, 404, 731, 778, 874
BciT130I	CCWGG	2 cut(s)	130, 423
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	560, 621, 1093
BfaI	CTAG	2 cut(s)	47, 507
BfoI	RGCGCY	1 cut(s)	79
BfrI	CTTAAG	2 cut(s)	631, 986
BisI	GCNGC	3 cut(s)	103, 758, 1038
BlsI	GCNGC	3 cut(s)	104, 759, 1039
Bme1390I	CCNGG	2 cut(s)	130, 423
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	53, 121
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	2 cut(s)	130, 423
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	214, 396, 691, 901
BmuI	ACTGGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	936
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	5 cut(s)	117, 128, 870, 1025, 1052
BsaWI	WCCGGW	2 cut(s)	1011, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 362, 1030
Bse118I	RCCGGY	1 cut(s)	1011
Bse1I	ACTGG	2 cut(s)	223, 664
Bse3DI	GCAATG	2 cut(s)	204, 500
BseBI	CCWGG	2 cut(s)	130, 423
BseDI	CCNNGG	5 cut(s)	117, 128, 870, 1025, 1052
BseGI	GGATG	5 cut(s)	124, 229, 742, 839, 866
BseLI	CCNNNNNNNGG	3 cut(s)	234, 362, 1030
BseMI	GCAATG	2 cut(s)	204, 500
BseNI	ACTGG	2 cut(s)	223, 664
BseRI	GAGGAG	1 cut(s)	933
BseXI	GCAGC	3 cut(s)	114, 769, 1024
BseYI	CCCAGC	1 cut(s)	732
Bsh1285I	CGRYCG	1 cut(s)	1016
BshFI	GGCC	2 cut(s)	54, 366
BshTI	ACCGGT	1 cut(s)	1011
BsiEI	CGRYCG	1 cut(s)	1016
BsiSI	CCGG	2 cut(s)	1012, 1152
BslI	CCNNNNNNNGG	3 cut(s)	234, 362, 1030
BsmAI	GTCTC	3 cut(s)	560, 621, 1093
BsmI	GAATGC	2 cut(s)	692, 1045
BsnI	GGCC	2 cut(s)	54, 366
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	4 cut(s)	28, 256, 601, 994
Bsp19I	CCATGG	2 cut(s)	117, 1025
BspACI	CCGC	3 cut(s)	465, 730, 860
BspANI	GGCC	2 cut(s)	54, 366
BspLI	GGNNCC	1 cut(s)	864
BspPI	GGATC	2 cut(s)	251, 596
BspQI	GCTCTTC	1 cut(s)	471
BspTI	CTTAAG	2 cut(s)	631, 986
BspTNI	GGTCTC	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	204, 500
BsrFI	RCCGGY	1 cut(s)	1011
BsrI	ACTGG	2 cut(s)	223, 664
BssAI	RCCGGY	1 cut(s)	1011
BssECI	CCNNGG	5 cut(s)	117, 128, 870, 1025, 1052
BssMI	GATC	4 cut(s)	28, 256, 601, 994
BssSI	CACGAG	1 cut(s)	771
BssT1I	CCWWGG	3 cut(s)	117, 1025, 1052
Bst2BI	CACGAG	1 cut(s)	771
Bst2UI	CCWGG	2 cut(s)	130, 423
Bst4CI	ACNGT	3 cut(s)	344, 580, 975
Bst6I	CTCTTC	2 cut(s)	471, 1075
BstAFI	CTTAAG	2 cut(s)	631, 986
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	66
BstDSI	CCRYGG	2 cut(s)	117, 1025
BstEII	GGTNACC	1 cut(s)	1018
BstF5I	GGATG	5 cut(s)	124, 229, 742, 839, 866
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	4 cut(s)	31, 259, 604, 997
BstMAI	GTCTC	3 cut(s)	560, 621, 1093
BstMBI	GATC	4 cut(s)	28, 256, 601, 994
BstMCI	CGRYCG	1 cut(s)	1016
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	2 cut(s)	130, 423
BstPI	GGTNACC	1 cut(s)	1018
BstSCI	CCNGG	2 cut(s)	128, 421
BstV1I	GCAGC	3 cut(s)	114, 769, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	54, 366
BtgI	CCRYGG	2 cut(s)	117, 1025
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	124, 229, 742, 839, 866
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	1011
Cfr13I	GGNCC	2 cut(s)	53, 121
Csp6I	GTAC	2 cut(s)	352, 649
CspAI	ACCGGT	1 cut(s)	1011
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviQI	GTAC	2 cut(s)	352, 649
DpnI	GATC	4 cut(s)	30, 258, 603, 996
DpnII	GATC	4 cut(s)	28, 256, 601, 994
Eam1104I	CTCTTC	2 cut(s)	471, 1075
EarI	CTCTTC	2 cut(s)	471, 1075
Eco130I	CCWWGG	3 cut(s)	117, 1025, 1052
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	1018
EcoO65I	GGTNACC	1 cut(s)	1018
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	2 cut(s)	128, 421
EcoT14I	CCWWGG	3 cut(s)	117, 1025, 1052
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	3 cut(s)	117, 1025, 1052
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FauI	CCCGC	2 cut(s)	472, 737
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	3 cut(s)	103, 758, 1038
FokI	GGATG	5 cut(s)	111, 236, 749, 826, 853
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	3 cut(s)	103, 758, 1038
FspBI	CTAG	2 cut(s)	47, 507
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	3 cut(s)	103, 758, 1038
GsaI	CCCAGC	1 cut(s)	736
GsuI	CTGGAG	1 cut(s)	936
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	54, 366
HapII	CCGG	2 cut(s)	1012, 1152
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	592, 750, 828, 875
HpaII	CCGG	2 cut(s)	1012, 1152
HphI	GGTGA	4 cut(s)	139, 180, 1030, 1041
Hpy166II	GTNNAC	4 cut(s)	340, 583, 971, 1009
Hpy188I	TCNGA	4 cut(s)	95, 597, 713, 871
Hpy188III	TCNNGA	5 cut(s)	47, 370, 403, 771, 1082
Hpy8I	GTNNAC	4 cut(s)	340, 583, 971, 1009
HpyAV	CCTTC	3 cut(s)	44, 270, 615
HpyCH4III	ACNGT	3 cut(s)	344, 580, 975
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HspAI	GCGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	28, 256, 601, 994
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	671, 941
Lsp1109I	GCAGC	3 cut(s)	114, 769, 1024
LweI	GCATC	4 cut(s)	214, 396, 691, 901
MaeI	CTAG	2 cut(s)	47, 507
MaeIII	GTNAC	4 cut(s)	145, 214, 244, 1018
MalI	GATC	4 cut(s)	30, 258, 603, 996
MboI	GATC	4 cut(s)	28, 256, 601, 994
MboII	GAAGA	5 cut(s)	177, 488, 759, 1062, 1124
MfeI	CAATTG	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	4 cut(s)	154, 347, 373, 1085
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	8 cut(s)	161, 271, 377, 534, 778, 787, 865, 911
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	5 cut(s)	60, 417, 632, 764, 987
MspA1I	CMGCKG	1 cut(s)	732
MspCI	CTTAAG	2 cut(s)	631, 986
MspI	CCGG	2 cut(s)	1012, 1152
MspR9I	CCNGG	2 cut(s)	130, 423
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	2 cut(s)	692, 1045
MvaI	CCWGG	2 cut(s)	130, 423
MwoI	GCNNNNNNNGC	1 cut(s)	857
NcoI	CCATGG	2 cut(s)	117, 1025
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	4 cut(s)	28, 256, 601, 994
NlaIV	GGNNCC	1 cut(s)	864
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	3 cut(s)	145, 244, 1018
PceI	AGGCCT	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	471
PctI	GAATGC	2 cut(s)	692, 1045
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	4 cut(s)	592, 750, 828, 875
PinAI	ACCGGT	1 cut(s)	1011
PkrI	GCNGC	3 cut(s)	104, 759, 1039
Psp6I	CCWGG	2 cut(s)	128, 421
PspEI	GGTNACC	1 cut(s)	1018
PspFI	CCCAGC	1 cut(s)	732
PspGI	CCWGG	2 cut(s)	128, 421
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	2 cut(s)	53, 121
RsaI	GTAC	2 cut(s)	353, 650
RsaNI	GTAC	2 cut(s)	352, 649
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	5 cut(s)	60, 417, 632, 764, 987
SatI	GCNGC	3 cut(s)	103, 758, 1038
Sau3AI	GATC	4 cut(s)	28, 256, 601, 994
Sau96I	GGNCC	2 cut(s)	53, 121
ScrFI	CCNGG	2 cut(s)	130, 423
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	4 cut(s)	214, 396, 691, 901
SinI	GGWCC	1 cut(s)	121
SmlI	CTYRAG	2 cut(s)	631, 986
SmoI	CTYRAG	2 cut(s)	631, 986
Sse9I	AATT	4 cut(s)	154, 347, 373, 1085
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	3 cut(s)	465, 730, 860
SspI	AATATT	1 cut(s)	434
SspMI	CTAG	2 cut(s)	47, 507
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	128, 421
StyI	CCWWGG	3 cut(s)	117, 1025, 1052
TaaI	ACNGT	3 cut(s)	344, 580, 975
TaqI	TCGA	3 cut(s)	81, 529, 1089
TasI	AATT	4 cut(s)	154, 347, 373, 1085
TfiI	GAWTC	4 cut(s)	592, 750, 828, 875
Tru1I	TTAA	5 cut(s)	60, 417, 632, 764, 987
Tru9I	TTAA	5 cut(s)	60, 417, 632, 764, 987
TseFI	GTSAC	3 cut(s)	145, 244, 1018
TseI	GCWGC	3 cut(s)	102, 757, 1037
Tsp45I	GTSAC	3 cut(s)	145, 244, 1018
TspDTI	ATGAA	6 cut(s)	23, 383, 666, 675, 742, 919
Vha464I	CTTAAG	2 cut(s)	631, 986
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	1085
XbaI	TCTAGA	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	1008
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	2 cut(s)	47, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.