pycom13g20600

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015591
Physical Location & Seq
Forward (+)
16765000 .. 16767063
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGGAATATTTTTCCGGGAAAAAGCGACCCACAATCAGTATCTCACTTTTCACTACTTTTTCCGAGTCAATTTCCTCTGACAAGTTCCCCAAGTCAATCAAATCCCCAAGAAATTTCCAAGATGGGGTTGTTGGGCTTGGAATAGTGGCTGCCATGACTGATTTGGGCAGCCCCAGTGAAGTGGCTTTGTCTGAAAAGTCACCAAGGTCGAGCCCAATCCCCATAGTCTCTGCAGCTAATTTCAGAGGTGGGTTTTGCGTGGACAGGGCTGGGGCTGTGGTGGATGAATTGTCTGAGAGCTATACGTGTGTGATTTCGCATTTCGGAAACAATTTGACATCGAAGCGGGTTTATTTCGATGATAAGCTGAGTTGGGTTGTGGATGATCCTAATGCTGGTATGGTGGTGGCCCCTGGGGTGTTCTCTACTTCTCCATGGAGTATTGGTGAAGTGGGAAGAGAGTTTTGGGCTTCCGATTTTCTCAGTTGTTGTTATCTTTGCAAGAAGCAGCTTCATGGATTGGACATTTTCATGTACAGAGGTGAGAAAGCGTTTTGCAGCGCTGAGTGCCGTGACAAGCACATGCGCAGCGACGATCACAAGGGCAAGTGCAGATCCGAAGCAGTAAAATCACTTGATTACTCAGCGTCGCCATGCTCCAGTCCGCTCGTCTTCTTGGCCGGGGTTGAGGTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

233

Amino Acids

25.31

Weight (kDa)

6.43

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 157 - 200 9.3e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06100
malus_domestica MD13G1233400.v1.1 MD16G1238400.v1.1
prunus_persica Prupe.1G064600_v2.0.a1
pyrus_communis pycom13g20600 pycom16g19950
rosa_chinensis RchiOBHm_Chr4g0397681
rosa_laevigata RLG00000009419
rosa_multiflora Rmu_sc0002729.1_g000013
rosa_roxburghii Rroxscaffold_5G00342490
rosa_rugosa Rorug03G0341900
rosa_samantha Rh4AG079800 Rh4BG077800 Rh4CG085800 Rh4DG073000
rosa_wichuraiana Rw4G006540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 667
AciI CCGC 2 cut(s) 346, 665
AclWI GGATC 2 cut(s) 380, 609
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 536
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 124, 395
AflIII ACRYGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 448, 480
AluBI AGCT 4 cut(s) 236, 300, 367, 511
AluI AGCT 4 cut(s) 236, 300, 367, 511
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 380, 609
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 408, 678
ApeKI GCWGC 6 cut(s) 149, 168, 233, 508, 558, 588
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 2 cut(s) 563, 588
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 2 cut(s) 16, 682
AsuHPI GGTGA 3 cut(s) 192, 458, 554
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 664
BbvI GCAGC 6 cut(s) 136, 180, 245, 520, 570, 600
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 2 cut(s) 16, 682
BcoDI GTCTC 1 cut(s) 232
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 564
BisI GCNGC 6 cut(s) 150, 169, 234, 509, 559, 589
BlsI GCNGC 6 cut(s) 151, 170, 235, 510, 560, 590
Bme1390I CCNGG 3 cut(s) 16, 414, 682
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 3 cut(s) 16, 414, 682
BmrI ACTGGG 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 664
BpmI CTGGAG 1 cut(s) 643
BpuMI CCSGG 2 cut(s) 16, 682
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 5 cut(s) 203, 412, 413, 434, 681
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 395
Bse1I ACTGG 2 cut(s) 174, 660
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 5 cut(s) 203, 412, 413, 434, 681
BseGI GGATG 2 cut(s) 289, 388
BseLI CCNNNNNNNGG 2 cut(s) 124, 395
BseMII CTCAG 5 cut(s) 285, 359, 496, 555, 657
BseNI ACTGG 2 cut(s) 174, 660
BseXI GCAGC 6 cut(s) 136, 180, 245, 520, 570, 600
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 631
BshFI GGCC 2 cut(s) 410, 680
BsiSI CCGG 2 cut(s) 15, 681
BslI CCNNNNNNNGG 2 cut(s) 124, 395
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 410, 680
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 3 cut(s) 385, 595, 614
Bsp19I CCATGG 1 cut(s) 434
BspACI CCGC 2 cut(s) 346, 665
BspANI GGCC 2 cut(s) 410, 680
BspCNI CTCAG 5 cut(s) 286, 360, 495, 556, 656
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 2 cut(s) 380, 609
BsrBI CCGCTC 1 cut(s) 667
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 2 cut(s) 174, 660
BssECI CCNNGG 5 cut(s) 203, 412, 413, 434, 681
BssMI GATC 3 cut(s) 385, 595, 614
BssT1I CCWWGG 2 cut(s) 203, 434
Bst2UI CCWGG 1 cut(s) 414
Bst6I CTCTTC 1 cut(s) 451
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 306
BstDEI CTNAG 5 cut(s) 294, 368, 482, 564, 643
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 289, 388
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 2 cut(s) 563, 588
BstKTI GATC 3 cut(s) 388, 598, 617
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 3 cut(s) 385, 595, 614
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 14, 412, 680
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 6 cut(s) 136, 180, 245, 520, 570, 600
BstV2I GAAGAC 1 cut(s) 664
BstX2I RGATCY 1 cut(s) 614
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 2 cut(s) 410, 680
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 2 cut(s) 289, 388
BtsIMutI CAGTG 1 cut(s) 181
CfoI GCGC 2 cut(s) 563, 588
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 636
Csp6I GTAC 1 cut(s) 535
CviAII CATG 6 cut(s) 154, 435, 515, 532, 583, 654
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 5 cut(s) 294, 368, 482, 564, 643
DpnI GATC 3 cut(s) 387, 597, 616
DpnII GATC 3 cut(s) 385, 595, 614
EaeI YGGCCR 1 cut(s) 678
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 203, 434
Eco24I GRGCYC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 2 cut(s) 203, 434
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 2 cut(s) 203, 434
FaeI CATG 6 cut(s) 157, 438, 518, 535, 586, 657
FatI CATG 6 cut(s) 153, 434, 514, 531, 582, 653
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 6 cut(s) 150, 169, 234, 509, 559, 589
FokI GGATG 2 cut(s) 296, 395
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 6 cut(s) 150, 169, 234, 509, 559, 589
FspI TGCGCA 1 cut(s) 587
GlaI GCGC 2 cut(s) 562, 587
GluI GCNGC 6 cut(s) 150, 169, 234, 509, 559, 589
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 643
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 2 cut(s) 410, 680
HapII CCGG 2 cut(s) 15, 681
HgaI GACGC 1 cut(s) 636
HhaI GCGC 2 cut(s) 563, 588
Hin1II CATG 6 cut(s) 157, 438, 518, 535, 586, 657
Hin6I GCGC 2 cut(s) 561, 586
HinP1I GCGC 2 cut(s) 561, 586
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 15, 681
HphI GGTGA 3 cut(s) 192, 458, 554
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 8 cut(s) 64, 79, 193, 245, 295, 326, 475, 619
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 596, 652
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 4 cut(s) 233, 501, 558, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 5 cut(s) 294, 368, 482, 564, 643
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 6 cut(s) 157, 438, 518, 535, 586, 657
HspAI GCGC 2 cut(s) 561, 586
Kzo9I GATC 3 cut(s) 385, 595, 614
LmnI GCTCC 1 cut(s) 662
LpnPI CCDG 9 cut(s) 28, 187, 250, 255, 381, 399, 426, 673, 694
Lsp1109I GCAGC 6 cut(s) 136, 180, 245, 520, 570, 600
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 198, 572
MalI GATC 3 cut(s) 387, 597, 616
MbiI CCGCTC 1 cut(s) 667
MboI GATC 3 cut(s) 385, 595, 614
MboII GAAGA 2 cut(s) 468, 664
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 5 cut(s) 69, 112, 238, 287, 331
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 4 cut(s) 85, 239, 533, 682
MslI CAYNNNNRTG 1 cut(s) 530
MspI CCGG 2 cut(s) 15, 681
MspR9I CCNGG 3 cut(s) 16, 414, 682
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 567
NciI CCSGG 2 cut(s) 16, 682
NcoI CCATGG 1 cut(s) 434
NdeII GATC 3 cut(s) 385, 595, 614
NlaIII CATG 6 cut(s) 157, 438, 518, 535, 586, 657
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 2 cut(s) 198, 572
NsbI TGCGCA 1 cut(s) 587
NspI RCATGY 1 cut(s) 586
PasI CCCWGGG 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 6 cut(s) 151, 170, 235, 510, 560, 590
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 530
SatI GCNGC 6 cut(s) 150, 169, 234, 509, 559, 589
Sau3AI GATC 3 cut(s) 385, 595, 614
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 3 cut(s) 16, 414, 682
SduI GDGCHC 1 cut(s) 215
SetI ASST 9 cut(s) 209, 238, 250, 302, 308, 369, 513, 544, 693
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 530
Sse9I AATT 5 cut(s) 69, 112, 238, 287, 331
SsiI CCGC 2 cut(s) 346, 665
SspI AATATT 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 14, 412, 680
StyI CCWWGG 2 cut(s) 203, 434
TaiI ACGT 1 cut(s) 308
TaqI TCGA 3 cut(s) 209, 341, 357
TasI AATT 5 cut(s) 69, 112, 238, 287, 331
TatI WGTACW 1 cut(s) 534
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 198, 572
TseI GCWGC 6 cut(s) 149, 168, 233, 508, 558, 588
Tsp45I GTSAC 2 cut(s) 198, 572
TspDTI ATGAA 3 cut(s) 300, 503, 520
TspRI CASTG 1 cut(s) 181
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.