pycom13g21800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016000
Physical Location & Seq
Reverse (-)
18782063 .. 18784078
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGCAAGCCAAGCTTAATACAAATTTGGCATTAAGTCAATGTACTGCTTTAAAAGGGTTTGCATTTCAAATATCATTAAATGTTTCAAAGATACAACACCACCACATGACCAAAATCACACTCACCAGAGAAAATCACTGTCCTCTAACCCCAACGTCGTCGCCTTACCTCAACGATTTGTCGGGGGATGAAATGGCAATCGTAAATTCGATCTTCCCACTATATTCATTTGCATATACAATAGTCATAAAAACAACATTTAAAACGAAAACAGAAGAACTGCACTTCAAACAAGTAAGCATGTCGTCCTCCATATCCTCATCTCAACAGAGCTTTCTAGCCAACGTTCTCACCCCACCACCCCACAAACCCAAAACCAAGATTCTCATTAATAACACTTTCATCTCATGCAAAAGAATTGATGAAACGCCCAGAAAGGATGAGAACAAATTGGCAAAGTTGGCAATGGTCACACTGGCAGCTGGGGTGTTGACATTGGGCTCAGTTCATGATGCATCAGCTGCCAAATCTGGTGGAAGAGTTGGAGGCCAGGCGTTTCGGTCGTCGACTCCTCGGTCTTCGTCCCCTAGGATCAATAACAATTCAAGGACCAATATATACATCAATCCTCCAGTAGCACCACCTCTAGTTGGTGGCTATGGATATGGCTATGGAGTACCGTTCTTCGGAGGCTGGGGTTGGTCTCCATTTTCATTTTTCGCCCCAGGTCCTGGTGTTGTCATTGGCATCGGTGGCGGGTTCCAACTTTTTGCTTTCTTTGTGTTTCTTGGTGCTGTTGCTGCTGTTGCAAGGAGATTCACTGGATCAAGAGACGAAGAAGAAGATGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

285

Amino Acids

30.81

Weight (kDa)

9.58

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57345
fragaria_vesca FvH4_4g07780
malus_domestica MD13G1247100.v1.1
pyrus_communis pycom13g21800
rosa_chinensis RchiOBHm_Chr4g0400871
rosa_laevigata RLG00000009171
rosa_multiflora Rmu_sc0004401.1_g000016 Rmu_sc0018346.1_g000005
rosa_roxburghii Rroxscaffold_5G00345750
rosa_rugosa Rorug04G0026500
rosa_samantha Rh4AG104500 Rh4BG099700 Rh4CG112900 Rh4DG096600
rosa_wichuraiana Rw4G008460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 574
AccB7I CCANNNNNTGG 1 cut(s) 731
AccI GTMKAC 1 cut(s) 566
AciI CCGC 1 cut(s) 756
AclI AACGTT 1 cut(s) 345
AclWI GGATC 2 cut(s) 599, 832
AcsI RAATTY 2 cut(s) 22, 205
AfaI GTAC 2 cut(s) 43, 678
AfiI CCNNNNNNNGG 3 cut(s) 650, 686, 731
AgsI TTSAA 4 cut(s) 68, 87, 289, 606
AjnI CCWGG 3 cut(s) 549, 724, 730
AluBI AGCT 4 cut(s) 13, 333, 482, 521
AluI AGCT 4 cut(s) 13, 333, 482, 521
Alw26I GTCTC 2 cut(s) 708, 825
AlwI GGATC 2 cut(s) 599, 832
AlwNI CAGNNNCTG 1 cut(s) 731
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 3 cut(s) 479, 521, 800
ApoI RAATTY 2 cut(s) 22, 205
AseI ATTAAT 1 cut(s) 390
AspA2I CCTAGG 1 cut(s) 587
AspS9I GGNCC 2 cut(s) 609, 728
AsuHPI GGTGA 2 cut(s) 115, 343
AvaII GGWCC 2 cut(s) 609, 728
AvrII CCTAGG 1 cut(s) 587
BanII GRGCYC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 491, 508, 787
BciT130I CCWGG 3 cut(s) 551, 726, 732
BcoDI GTCTC 2 cut(s) 708, 825
BfaI CTAG 4 cut(s) 338, 588, 647, 853
BisI GCNGC 3 cut(s) 480, 522, 801
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 3 cut(s) 481, 523, 802
Bme1390I CCNGG 3 cut(s) 551, 726, 732
Bme18I GGWCC 2 cut(s) 609, 728
BmgT120I GGNCC 2 cut(s) 609, 728
BmiI GGNNCC 1 cut(s) 761
BmrFI CCNGG 3 cut(s) 551, 726, 732
BmsI GCATC 3 cut(s) 502, 524, 756
BpiI GAAGAC 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 708
BsaJI CCNNGG 3 cut(s) 572, 587, 724
Bsc4I CCNNNNNNNGG 3 cut(s) 650, 686, 731
Bse1I ACTGG 3 cut(s) 480, 632, 826
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 3 cut(s) 551, 726, 732
BseDI CCNNGG 3 cut(s) 572, 587, 724
BseGI GGATG 2 cut(s) 193, 445
BseLI CCNNNNNNNGG 3 cut(s) 650, 686, 731
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 3 cut(s) 480, 632, 826
BseRI GAGGAG 1 cut(s) 561
BseXI GCAGC 3 cut(s) 491, 508, 787
BseYI CCCAGC 2 cut(s) 482, 693
BsgI GTGCAG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 1 cut(s) 549
BsiEI CGRYCG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 650, 686, 731
BsmAI GTCTC 2 cut(s) 708, 825
BsmBI CGTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 1 cut(s) 549
Bso31I GGTCTC 1 cut(s) 708
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 3 cut(s) 210, 591, 824
BspACI CCGC 1 cut(s) 756
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 1 cut(s) 515
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 761
BspPI GGATC 2 cut(s) 599, 832
BspTNI GGTCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 3 cut(s) 480, 632, 826
BssECI CCNNGG 3 cut(s) 572, 587, 724
BssMI GATC 3 cut(s) 210, 591, 824
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 3 cut(s) 551, 726, 732
Bst4CI ACNGT 2 cut(s) 140, 681
Bst6I CTCTTC 1 cut(s) 532
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 193, 445
BstKTI GATC 3 cut(s) 213, 594, 827
BstMAI GTCTC 2 cut(s) 708, 825
BstMBI GATC 3 cut(s) 210, 591, 824
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 6 cut(s) 10, 461, 521, 753, 800, 806
BstNI CCWGG 3 cut(s) 551, 726, 732
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 549, 724, 730
BstV1I GCAGC 3 cut(s) 491, 508, 787
BstV2I GAAGAC 1 cut(s) 570
BsuRI GGCC 1 cut(s) 549
BtsCI GGATG 2 cut(s) 193, 445
BtsIMutI CAGTG 3 cut(s) 136, 473, 819
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 609, 728
Csp6I GTAC 2 cut(s) 42, 677
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 4 cut(s) 106, 301, 408, 509
CviQI GTAC 2 cut(s) 42, 677
DdeI CTNAG 1 cut(s) 502
DpnI GATC 3 cut(s) 212, 593, 826
DpnII GATC 3 cut(s) 210, 591, 824
DraI TTTAAA 2 cut(s) 51, 262
DrdI GACNNNNNNGTC 1 cut(s) 574
DseDI GACNNNNNNGTC 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 609, 728
EcoO109I RGGNCCY 1 cut(s) 728
EcoRII CCWGG 3 cut(s) 549, 724, 730
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 825
FaeI CATG 4 cut(s) 109, 304, 411, 512
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 568
FatI CATG 4 cut(s) 105, 300, 407, 508
FauI CCCGC 1 cut(s) 749
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 3 cut(s) 480, 522, 801
FokI GGATG 2 cut(s) 200, 452
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 480, 522, 801
FspBI CTAG 4 cut(s) 338, 588, 647, 853
GluI GCNGC 3 cut(s) 480, 522, 801
GsaI CCCAGC 2 cut(s) 486, 697
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 1 cut(s) 549
Hin1II CATG 4 cut(s) 109, 304, 411, 512
HincII GTYRAC 2 cut(s) 492, 567
HindII GTYRAC 2 cut(s) 492, 567
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 382, 568, 816
HphI GGTGA 2 cut(s) 115, 343
Hpy166II GTNNAC 2 cut(s) 492, 567
Hpy188I TCNGA 1 cut(s) 689
Hpy188III TCNNGA 2 cut(s) 509, 828
Hpy8I GTNNAC 2 cut(s) 492, 567
Hpy99I CGWCG 3 cut(s) 160, 163, 568
HpyCH4III ACNGT 2 cut(s) 140, 681
HpyCH4IV ACGT 2 cut(s) 155, 345
HpyCH4V TGCA 7 cut(s) 4, 62, 233, 283, 411, 515, 809
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 461, 521, 753, 800, 806
HpyF3I CTNAG 1 cut(s) 502
HpySE526I ACGT 2 cut(s) 155, 345
Hsp92II CATG 4 cut(s) 109, 304, 411, 512
Kzo9I GATC 3 cut(s) 210, 591, 824
Lsp1109I GCAGC 3 cut(s) 491, 508, 787
LweI GCATC 3 cut(s) 502, 524, 756
MaeI CTAG 4 cut(s) 338, 588, 647, 853
MaeII ACGT 2 cut(s) 155, 345
MaeIII GTNAC 1 cut(s) 469
MalI GATC 3 cut(s) 212, 593, 826
MboI GATC 3 cut(s) 210, 591, 824
MboII GAAGA 8 cut(s) 205, 287, 549, 570, 676, 848, 851, 854
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 5 cut(s) 22, 205, 417, 449, 601
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 2 cut(s) 523, 787
MnlI CCTC 9 cut(s) 153, 179, 319, 328, 539, 582, 639, 654, 683
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 6 cut(s) 15, 32, 50, 77, 261, 390
MspA1I CMGCKG 2 cut(s) 482, 521
MspR9I CCNGG 3 cut(s) 551, 726, 732
MvaI CCWGG 3 cut(s) 551, 726, 732
MwoI GCNNNNNNNGC 6 cut(s) 10, 461, 521, 753, 800, 806
NdeII GATC 3 cut(s) 210, 591, 824
NlaIII CATG 4 cut(s) 109, 304, 411, 512
NlaIV GGNNCC 1 cut(s) 761
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 517
NspI RCATGY 1 cut(s) 304
PagI TCATGA 1 cut(s) 508
PfeI GAWTC 2 cut(s) 382, 816
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 3 cut(s) 481, 523, 802
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PpuMI RGGWCCY 1 cut(s) 728
PshBI ATTAAT 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 728
Psp6I CCWGG 3 cut(s) 549, 724, 730
PspFI CCCAGC 2 cut(s) 482, 693
PspGI CCWGG 3 cut(s) 549, 724, 730
PspN4I GGNNCC 1 cut(s) 761
PspPI GGNCC 2 cut(s) 609, 728
PspPPI RGGWCCY 1 cut(s) 728
PstNI CAGNNNCTG 1 cut(s) 731
PvuII CAGCTG 2 cut(s) 482, 521
RsaI GTAC 2 cut(s) 43, 678
RsaNI GTAC 2 cut(s) 42, 677
SalI GTCGAC 1 cut(s) 565
SaqAI TTAA 6 cut(s) 15, 32, 50, 77, 261, 390
SatI GCNGC 3 cut(s) 480, 522, 801
Sau3AI GATC 3 cut(s) 210, 591, 824
Sau96I GGNCC 2 cut(s) 609, 728
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 3 cut(s) 551, 726, 732
SduI GDGCHC 1 cut(s) 503
SetI ASST 9 cut(s) 15, 158, 171, 335, 348, 484, 523, 646, 730
SfaNI GCATC 3 cut(s) 502, 524, 756
SinI GGWCC 2 cut(s) 609, 728
Sse9I AATT 5 cut(s) 22, 205, 417, 449, 601
SsiI CCGC 1 cut(s) 756
SspMI CTAG 4 cut(s) 338, 588, 647, 853
StyD4I CCNGG 3 cut(s) 549, 724, 730
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 2 cut(s) 140, 681
TaiI ACGT 2 cut(s) 158, 348
TaqI TCGA 2 cut(s) 209, 566
TaqII GACCGA 2 cut(s) 549, 564
TasI AATT 5 cut(s) 22, 205, 417, 449, 601
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 2 cut(s) 382, 816
Tru1I TTAA 6 cut(s) 15, 32, 50, 77, 261, 390
Tru9I TTAA 6 cut(s) 15, 32, 50, 77, 261, 390
TscAI CASTG 3 cut(s) 143, 480, 826
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 479, 521, 800
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 6 cut(s) 204, 216, 391, 438, 497, 702
TspRI CASTG 3 cut(s) 143, 480, 826
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 609, 728
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 22, 205
XceI RCATGY 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 566
XspI CTAG 4 cut(s) 338, 588, 647, 853
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.