Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0019805

Physical Location & Seq

Genomic Coordinates Reverse (-)

159940 .. 160612

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCAGGCTACTATGACTCAATTATCAAGGGTGTGGCAACCATTATGGTATCCTACTCAAGCTGGAACGGAGTAAAGATGCACGTTAATCGTGATCTTATCACTGGCTTCCTTAAGAACACTCTTCGATTCAGGGGTTTTGTCATCTCAGATTGGGAGGGTATTGATAGGATCACCTCTCCACCTCATGCCAACTACACATATTCGATTCAAGCAGGAATCAGTGCCGGCATTGATATGGTCATGGTTCCATACAAGTATACGGAATTCATTAACGATCTAACCTTCCTGAGAATTTTGCGAGTTAAGTTTGTGATGGGCCTATTTGAGGAACCATTGGCTGATCTCAGCTTTATCAATCAGCTCGGCTGCCAGGTAACTATTGGTAAACTTGACAACATTCTACAAGCACTGAGGAAAACTTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

144

Amino Acids

16.25

Weight (kDa)

8.71

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019805)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G006800_v2.0.a1
pyrus_communis	pycom14g00280
rosa_chinensis	RchiOBHm_Chr5g0049451
rosa_multiflora	Rmu_co8185098.1_g000001
rosa_samantha	Rh5BG336100 Rh5BG336200 Rh5DG348400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	266, 294
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	2 cut(s)	4, 372
AluBI	AGCT	3 cut(s)	63, 351, 364
AluI	AGCT	3 cut(s)	63, 351, 364
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	2 cut(s)	266, 294
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	6, 374
BciVI	GTATCC	1 cut(s)	61
BfrI	CTTAAG	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
Bme1390I	CCNGG	2 cut(s)	6, 374
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	249, 333
BmrFI	CCNGG	2 cut(s)	6, 374
BmsI	GCATC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	6, 374
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	4 cut(s)	162, 281, 361, 404
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	328
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	94, 171, 277, 343
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	4 cut(s)	161, 282, 360, 405
BspLI	GGNNCC	2 cut(s)	249, 333
BspPI	GGATC	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	4 cut(s)	94, 171, 277, 343
BssNAI	GTATAC	1 cut(s)	261
Bst1107I	GTATAC	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	6, 374
Bst6I	CTCTTC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	148, 290, 347, 413
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstKTI	GATC	4 cut(s)	97, 174, 280, 346
BstMBI	GATC	4 cut(s)	94, 171, 277, 343
BstNI	CCWGG	2 cut(s)	6, 374
BstSCI	CCNGG	2 cut(s)	4, 372
BstV1I	GCAGC	1 cut(s)	356
BstZ17I	GTATAC	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	102, 229, 410
Cac8I	GCNNGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	319
CviAII	CATG	2 cut(s)	188, 244
CviJI	RGCY	8 cut(s)	9, 63, 108, 321, 341, 351, 364, 369
CviKI_1	RGCY	8 cut(s)	9, 63, 108, 321, 341, 351, 364, 369
DdeI	CTNAG	4 cut(s)	148, 290, 347, 413
DpnI	GATC	4 cut(s)	96, 173, 279, 345
DpnII	GATC	4 cut(s)	94, 171, 277, 343
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	4, 372
FaeI	CATG	2 cut(s)	191, 247
FaiI	YATR	8 cut(s)	15, 47, 189, 202, 239, 245, 253, 261
FatI	CATG	2 cut(s)	187, 243
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	2 cut(s)	191, 247
HinfI	GANTC	4 cut(s)	17, 129, 208, 219
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	261, 389
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	92, 289
Hpy8I	GTNNAC	2 cut(s)	261, 389
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	148, 290, 347, 413
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	191, 247
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	94, 171, 277, 343
LpnPI	CCDG	9 cut(s)	18, 49, 90, 118, 201, 241, 302, 359, 386
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	4 cut(s)	96, 173, 279, 345
MboI	GATC	4 cut(s)	94, 171, 277, 343
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	3 cut(s)	21, 266, 294
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	5 cut(s)	151, 187, 195, 322, 408
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	5 cut(s)	87, 114, 273, 306, 425
MslI	CAYNNNNRTG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	6, 374
MvaI	CCWGG	2 cut(s)	6, 374
NaeI	GCCGGC	1 cut(s)	229
NdeII	GATC	4 cut(s)	94, 171, 277, 343
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	191, 247
NlaIV	GGNNCC	2 cut(s)	249, 333
NmeAIII	GCCGAG	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	129, 208, 219
PkrI	GCNGC	1 cut(s)	371
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	4, 372
PspGI	CCWGG	2 cut(s)	4, 372
PspN4I	GGNNCC	2 cut(s)	249, 333
PspPI	GGNCC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	5 cut(s)	87, 114, 273, 306, 425
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	4 cut(s)	94, 171, 277, 343
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	6, 374
SetI	ASST	8 cut(s)	65, 87, 179, 187, 287, 353, 366, 378
SfaNI	GCATC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	58, 113
SmoI	CTYRAG	2 cut(s)	58, 113
Sse9I	AATT	3 cut(s)	21, 266, 294
StyD4I	CCNGG	2 cut(s)	4, 372
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	127, 206
TasI	AATT	3 cut(s)	21, 266, 294
TfiI	GAWTC	3 cut(s)	129, 208, 219
Tru1I	TTAA	5 cut(s)	87, 114, 273, 306, 425
Tru9I	TTAA	5 cut(s)	87, 114, 273, 306, 425
TscAI	CASTG	3 cut(s)	109, 229, 417
TseI	GCWGC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	84, 278
TspRI	CASTG	3 cut(s)	109, 229, 417
Vha464I	CTTAAG	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	2 cut(s)	266, 294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.