Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019805

Physical Location & Seq

Genomic Coordinates Reverse (-)

47612558 .. 47637986

Gene Structure 25429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG348400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCTTCGCCCGCCAGGCTTCATCCGCCAAGCTCTCCTCGGACAAGCTTCATCTGCTGAGCTTTCCAGGACAAGCTTCGTCCGCCAAGCTCTCCTCGGCCAAGCTTCGTCCACCTGGCTCTCCTCGGCCAAGCTTCGTCCGTCCAGCTCTCCTCGGCCAAGCTTCGTCCACCTGGCTCTCCTCGGCCAAGCTTCGTCCGTCCAGCTCTCCTCGGCCAAGATTTGTGCGTCCAGCTCTCCTCGGCCAAGATTCGTGCGTCCAACTCTCCTCGGCCAAGCTTCATCCGCCCAGCTCTCCTCAGCCAAGCTTCGTCCGCCCAGCTTTTCTCAGCCAAGCTTCGTTTGCCAAGCTTTCCTCGGACAAGCTTCGTCCGCCAAGCTCTCCTCGGCCAAGCTTCGTCCGCCAAGCTCTCCTCGGACAAGCTTCGCCCTCCAAACTTTCCTCGGACTAGCTTCGTCCGCCAAGGTTTCCTCCGACAAGTTTTCCTCCGACATCACCATTGCAGATCCCCTAGCAAATCTGCAGTACCCAAGCCTAGCGGCCTCACCGCACGGCCTCGCAAATCTGCATAAGATAACAGAAGTAGAATACATGGCATACAAGGACCCAAAGAAGCCGATAAATGCTATAATCAAGGACCTGATGGGCAGAATGACAGTAGCAGAAAAGGTGGGGCAGATGACGCAGCTGGAACATGGAAATGCAACAGCTGAGATCATGTGGAACTACTCAATAGGCAGTGTACTGAGTGGCAGAGGAAGCGTACTGCAGCCGCAGGCCACTCCACAGGACTGGATCAAAATGGATCCAGAACTTGTGAAGAAAATTGGTTCTGCAACTGCTCTCGTAGTTAGAGCTGCTGGCATTAAGCCATTAACTATGCTTTTTCACCATGTGTTGCGGTCTGCAGAGATCCAAGATGGGGTAGATGTATGTTACGAGAGTTACAGCGAGGATCCTGAAATCGTAAAACAAATGACTGATATCATACTTCGATTGCAAGGCGAAATACCAGCTGATTCACGGAAGGGTGTTCCATTTGTTGGTGGAAAGGATAAGGTAGCGGCTTGCGCAAAACACTTTGTTGGAGACAGTGGTACGATTAAGGGCATCAATGAGAACGATACCGTGATTGATAAGCATGGATTATTGAACATTCACATGCCTGGTTATTACCATTCTATCATCAAGGGCGTATCCACTGTCATGGTTTCCTACTCCAGCTTGAATGGAACGAAGATGCATGCTAACCACAAGCTCATCGCCCAATTTCTTAAGAACACGCTTAAGTTCAGGGTACGTATGTATACAACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

439

Amino Acids

47.37

Weight (kDa)

9.81

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	268 - 431	3.9e-17	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019805)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G006800_v2.0.a1
pyrus_communis	pycom14g00280
rosa_chinensis	RchiOBHm_Chr5g0049451
rosa_multiflora	Rmu_co8185098.1_g000001
rosa_samantha	Rh5BG336100 Rh5BG336200 Rh5DG348400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1072
AccB7I	CCANNNNNTGG	1 cut(s)	1043
AccI	GTMKAC	1 cut(s)	1307
AclWI	GGATC	7 cut(s)	500, 800, 803, 813, 907, 950, 963
AcoI	YGGCCR	8 cut(s)	97, 126, 155, 184, 213, 242, 271, 387
AdeI	CACNNNGTG	1 cut(s)	895
AfaI	GTAC	5 cut(s)	527, 744, 765, 1099, 1299
AfiI	CCNNNNNNNGG	2 cut(s)	922, 1043
AflII	CTTAAG	2 cut(s)	1274, 1286
AgsI	TTSAA	2 cut(s)	1153, 1228
AjnI	CCWGG	5 cut(s)	13, 65, 113, 171, 1165
Alw26I	GTCTC	1 cut(s)	1083
AlwI	GGATC	7 cut(s)	500, 800, 803, 813, 907, 950, 963
ApeKI	GCWGC	3 cut(s)	685, 769, 857
AspLEI	GCGC	1 cut(s)	1073
AspS9I	GGNCC	2 cut(s)	604, 637
AsuHPI	GGTGA	3 cut(s)	487, 537, 881
AvaII	GGWCC	2 cut(s)	604, 637
BaeI	ACNNNNGTAYC	1 cut(s)	1289
BamHI	GGATCC	2 cut(s)	805, 955
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	697, 781, 844
BccI	CCATC	2 cut(s)	637, 914
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	5 cut(s)	15, 67, 115, 173, 1167
BciVI	GTATCC	1 cut(s)	1207
BcoDI	GTCTC	1 cut(s)	1083
BfaI	CTAG	3 cut(s)	449, 512, 536
BfmI	CTRYAG	3 cut(s)	521, 767, 906
BfrI	CTTAAG	2 cut(s)	1274, 1286
BfuI	GTATCC	1 cut(s)	1207
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	6 cut(s)	540, 686, 770, 773, 858, 1065
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	6 cut(s)	541, 687, 771, 774, 859, 1066
Bme1390I	CCNGG	5 cut(s)	15, 67, 115, 173, 1167
Bme18I	GGWCC	2 cut(s)	604, 637
BmgT120I	GGNCC	2 cut(s)	604, 637
BmiI	GGNNCC	3 cut(s)	606, 807, 957
BmrFI	CCNGG	5 cut(s)	15, 67, 115, 173, 1167
BmsI	GCATC	2 cut(s)	1119, 1230
BpmI	CTGGAG	1 cut(s)	1204
Bpu10I	CCTNAGC	1 cut(s)	298
Bpu1102I	GCTNAGC	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	1301
Bsc4I	CCNNNNNNNGG	2 cut(s)	922, 1043
Bse1I	ACTGG	1 cut(s)	797
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	5 cut(s)	15, 67, 115, 173, 1167
BseGI	GGATG	2 cut(s)	21, 281
BseLI	CCNNNNNNNGG	2 cut(s)	922, 1043
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	5 cut(s)	48, 312, 341, 702, 737
BseNI	ACTGG	1 cut(s)	797
BseXI	GCAGC	3 cut(s)	697, 781, 844
BseYI	CCCAGC	2 cut(s)	288, 317
BslI	CCNNNNNNNGG	2 cut(s)	922, 1043
BsmAI	GTCTC	1 cut(s)	1083
Bsp143I	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
Bsp1720I	GCTNAGC	1 cut(s)	57
BspCNI	CTCAG	5 cut(s)	49, 311, 340, 703, 738
BspLI	GGNNCC	3 cut(s)	606, 807, 957
BspMAI	CTGCAG	3 cut(s)	525, 771, 910
BspPI	GGATC	7 cut(s)	500, 800, 803, 813, 907, 950, 963
BspTI	CTTAAG	2 cut(s)	1274, 1286
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	797
BssMI	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
BssNAI	GTATAC	1 cut(s)	1308
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	1308
Bst2UI	CCWGG	5 cut(s)	15, 67, 115, 173, 1167
Bst4CI	ACNGT	4 cut(s)	658, 1094, 1129, 1204
BstAFI	CTTAAG	2 cut(s)	1274, 1286
BstBAI	YACGTR	1 cut(s)	1301
BstC8I	GCNNGC	5 cut(s)	11, 777, 862, 1069, 1245
BstDEI	CTNAG	5 cut(s)	57, 298, 327, 711, 746
BstF5I	GGATG	2 cut(s)	21, 281
BstHHI	GCGC	1 cut(s)	1073
BstKTI	GATC	6 cut(s)	508, 717, 798, 808, 915, 958
BstMAI	GTCTC	1 cut(s)	1083
BstMBI	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
BstNI	CCWGG	5 cut(s)	15, 67, 115, 173, 1167
BstNSI	RCATGY	2 cut(s)	1165, 1247
BstSCI	CCNGG	5 cut(s)	13, 65, 113, 171, 1165
BstSFI	CTRYAG	3 cut(s)	521, 767, 906
BstSNI	TACGTA	1 cut(s)	1301
BstV1I	GCAGC	3 cut(s)	697, 781, 844
BstX2I	RGATCY	4 cut(s)	505, 805, 912, 955
BstXI	CCANNNNNNTGG	2 cut(s)	792, 1207
BstYI	RGATCY	4 cut(s)	505, 805, 912, 955
BstZ17I	GTATAC	1 cut(s)	1308
BsuI	GTATCC	1 cut(s)	1207
BtgZI	GCGATG	1 cut(s)	1246
BtsCI	GGATG	2 cut(s)	21, 281
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	3 cut(s)	745, 1099, 1200
Cac8I	GCNNGC	5 cut(s)	11, 777, 862, 1069, 1245
CfoI	GCGC	1 cut(s)	1073
Cfr13I	GGNCC	2 cut(s)	604, 637
CseI	GACGC	3 cut(s)	216, 245, 691
Csp6I	GTAC	5 cut(s)	526, 743, 764, 1098, 1298
CviAII	CATG	8 cut(s)	592, 695, 718, 893, 1142, 1162, 1207, 1244
CviQI	GTAC	5 cut(s)	526, 743, 764, 1098, 1298
DdeI	CTNAG	5 cut(s)	57, 298, 327, 711, 746
DpnI	GATC	6 cut(s)	507, 716, 797, 807, 914, 957
DpnII	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
DraIII	CACNNNGTG	1 cut(s)	895
EaeI	YGGCCR	8 cut(s)	97, 126, 155, 184, 213, 242, 271, 387
EciI	GGCGGA	7 cut(s)	14, 71, 274, 303, 361, 390, 448
Eco105I	TACGTA	1 cut(s)	1301
Eco130I	CCWWGG	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	985
Eco47I	GGWCC	2 cut(s)	604, 637
EcoO109I	RGGNCCY	2 cut(s)	604, 637
EcoRII	CCWGG	5 cut(s)	13, 65, 113, 171, 1165
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	1245
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	8 cut(s)	595, 698, 721, 896, 1145, 1165, 1210, 1247
FatI	CATG	8 cut(s)	591, 694, 717, 892, 1141, 1161, 1206, 1243
FauI	CCCGC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	1307
Fnu4HI	GCNGC	6 cut(s)	540, 686, 770, 773, 858, 1065
FokI	GGATG	2 cut(s)	8, 268
Fsp4HI	GCNGC	6 cut(s)	540, 686, 770, 773, 858, 1065
FspBI	CTAG	3 cut(s)	449, 512, 536
FspI	TGCGCA	1 cut(s)	1072
GlaI	GCGC	1 cut(s)	1072
GluI	GCNGC	6 cut(s)	540, 686, 770, 773, 858, 1065
GsaI	CCCAGC	2 cut(s)	292, 321
GsuI	CTGGAG	1 cut(s)	1204
HgaI	GACGC	3 cut(s)	216, 245, 691
HhaI	GCGC	1 cut(s)	1073
Hin1II	CATG	8 cut(s)	595, 698, 721, 896, 1145, 1165, 1210, 1247
Hin6I	GCGC	1 cut(s)	1071
HinP1I	GCGC	1 cut(s)	1071
HinfI	GANTC	2 cut(s)	249, 1019
HphI	GGTGA	3 cut(s)	487, 537, 881
Hpy166II	GTNNAC	4 cut(s)	111, 169, 743, 1308
Hpy188I	TCNGA	6 cut(s)	41, 359, 417, 446, 475, 490
Hpy188III	TCNNGA	2 cut(s)	809, 959
Hpy8I	GTNNAC	4 cut(s)	111, 169, 743, 1308
HpyAV	CCTTC	1 cut(s)	1021
HpyCH4III	ACNGT	4 cut(s)	658, 1094, 1129, 1204
HpyCH4IV	ACGT	1 cut(s)	1300
HpyCH4V	TGCA	9 cut(s)	503, 523, 568, 704, 769, 836, 908, 1000, 1243
HpyF3I	CTNAG	5 cut(s)	57, 298, 327, 711, 746
HpySE526I	ACGT	1 cut(s)	1300
Hsp92II	CATG	8 cut(s)	595, 698, 721, 896, 1145, 1165, 1210, 1247
HspAI	GCGC	1 cut(s)	1071
Kzo9I	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
Lsp1109I	GCAGC	3 cut(s)	697, 781, 844
LweI	GCATC	2 cut(s)	1119, 1230
MaeI	CTAG	3 cut(s)	449, 512, 536
MaeII	ACGT	1 cut(s)	1300
MaeIII	GTNAC	2 cut(s)	935, 944
MalI	GATC	6 cut(s)	507, 716, 797, 807, 914, 957
MboI	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
MboII	GAAGA	2 cut(s)	832, 1249
MflI	RGATCY	4 cut(s)	505, 805, 912, 955
MluCI	AATT	2 cut(s)	825, 1268
MmeI	TCCRAC	4 cut(s)	284, 498, 513, 1066
Mph1103I	ATGCAT	1 cut(s)	1245
MseI	TTAA	5 cut(s)	867, 875, 1104, 1275, 1287
MslI	CAYNNNNRTG	3 cut(s)	699, 1160, 1205
MspA1I	CMGCKG	3 cut(s)	688, 710, 1016
MspCI	CTTAAG	2 cut(s)	1274, 1286
MspR9I	CCNGG	5 cut(s)	15, 67, 115, 173, 1167
MvaI	CCWGG	5 cut(s)	15, 67, 115, 173, 1167
NdeII	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
NlaIII	CATG	8 cut(s)	595, 698, 721, 896, 1145, 1165, 1210, 1247
NlaIV	GGNNCC	3 cut(s)	606, 807, 957
NmeAIII	GCCGAG	8 cut(s)	75, 104, 133, 162, 191, 220, 249, 365
NsbI	TGCGCA	1 cut(s)	1072
NsiI	ATGCAT	1 cut(s)	1245
NspI	RCATGY	2 cut(s)	1165, 1247
PaeI	GCATGC	1 cut(s)	1247
PfeI	GAWTC	2 cut(s)	249, 1019
PflMI	CCANNNNNTGG	1 cut(s)	1043
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	6 cut(s)	541, 687, 771, 774, 859, 1066
Ppu21I	YACGTR	1 cut(s)	1301
PpuMI	RGGWCCY	2 cut(s)	604, 637
Psp5II	RGGWCCY	2 cut(s)	604, 637
Psp6I	CCWGG	5 cut(s)	13, 65, 113, 171, 1165
PspFI	CCCAGC	2 cut(s)	288, 317
PspGI	CCWGG	5 cut(s)	13, 65, 113, 171, 1165
PspN4I	GGNNCC	3 cut(s)	606, 807, 957
PspPI	GGNCC	2 cut(s)	604, 637
PspPPI	RGGWCCY	2 cut(s)	604, 637
PstI	CTGCAG	3 cut(s)	525, 771, 910
PsuI	RGATCY	4 cut(s)	505, 805, 912, 955
PvuII	CAGCTG	3 cut(s)	688, 710, 1016
RsaI	GTAC	5 cut(s)	527, 744, 765, 1099, 1299
RsaNI	GTAC	5 cut(s)	526, 743, 764, 1098, 1298
RseI	CAYNNNNRTG	3 cut(s)	699, 1160, 1205
SaqAI	TTAA	5 cut(s)	867, 875, 1104, 1275, 1287
SatI	GCNGC	6 cut(s)	540, 686, 770, 773, 858, 1065
Sau3AI	GATC	6 cut(s)	505, 714, 795, 805, 912, 955
Sau96I	GGNCC	2 cut(s)	604, 637
ScrFI	CCNGG	5 cut(s)	15, 67, 115, 173, 1167
SfaNI	GCATC	2 cut(s)	1119, 1230
SfcI	CTRYAG	3 cut(s)	521, 767, 906
SinI	GGWCC	2 cut(s)	604, 637
SmiMI	CAYNNNNRTG	3 cut(s)	699, 1160, 1205
SmlI	CTYRAG	2 cut(s)	1274, 1286
SmoI	CTYRAG	2 cut(s)	1274, 1286
SnaBI	TACGTA	1 cut(s)	1301
SphI	GCATGC	1 cut(s)	1247
Sse9I	AATT	2 cut(s)	825, 1268
SspMI	CTAG	3 cut(s)	449, 512, 536
StyD4I	CCNGG	5 cut(s)	13, 65, 113, 171, 1165
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	4 cut(s)	658, 1094, 1129, 1204
TaiI	ACGT	1 cut(s)	1303
TaqI	TCGA	1 cut(s)	994
TasI	AATT	2 cut(s)	825, 1268
TatI	WGTACW	1 cut(s)	742
TauI	GCSGC	3 cut(s)	542, 775, 1067
TfiI	GAWTC	2 cut(s)	249, 1019
Tru1I	TTAA	5 cut(s)	867, 875, 1104, 1275, 1287
Tru9I	TTAA	5 cut(s)	867, 875, 1104, 1275, 1287
TscAI	CASTG	3 cut(s)	745, 1099, 1207
TseI	GCWGC	3 cut(s)	685, 769, 857
TspDTI	ATGAA	3 cut(s)	10, 39, 270
TspGWI	ACGGA	3 cut(s)	129, 187, 1039
TspRI	CASTG	3 cut(s)	745, 1099, 1207
Van91I	CCANNNNNTGG	1 cut(s)	1043
Vha464I	CTTAAG	2 cut(s)	1274, 1286
VpaK11BI	GGWCC	2 cut(s)	604, 637
XceI	RCATGY	2 cut(s)	1165, 1247
XmiI	GTMKAC	1 cut(s)	1307
XspI	CTAG	3 cut(s)	449, 512, 536
Zsp2I	ATGCAT	1 cut(s)	1245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.