Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019805

Physical Location & Seq

Genomic Coordinates Reverse (-)

47020172 .. 47021866

Gene Structure 1695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGTTCATGGCCACAATAATGCTTATAAGGCCACCATTTTCCCTCATAATGTTGGTCTTGGAGCTACCAGGCCAGGATCCAGAACTTGTGAAGAAAATTGGTTCTGCAACTGCTCTCGTAGTTAGAGCTGCTGGCATTAAGCCATTAACTATGCTTTTTCACCATGTGTTGCGGTCTGCAGAGATCCAAGATGGGGTAGATGTATGTTACGAGAGTTACAGCGAGGATCCTGAAATCGTAAAACAAATGACTGATATCATACTTCGATTGCAAGGCGAAATACCAGCTGATTCACGGAAGGGTGTTCCATTTGTTGGTGGAAAGGATAAGGTAGCGGCTTGCGCAAAACACTTTGTTGGAGACAGTGGTACGATTAAGGGCATCAATGAGAACGATACCGTGATTGATAAGCATGGATTATTGAACATTCACATGCCTGGTTATTACCATTCTATCATCAAGGGCGTATCCACTGTCATGGTTTCCTACTCCAGCTTGAATGGAACGAAGATGCATGCTAACCACAAGCTCATCGCCCAATTTCTTAAGAACACGCTTAAGTTCAGGGGATTTGTCATCTCTGACTGGCAGGGTATCAACAAACTTACCCATCTCTTGCTGGTCATGGTTCCCTTTAATCATACTGAGTTCATTGGGATTCTAACTAATCATGTCAACAACAAACTCGTCCCAATGAGTCGTATTGATGATGCAGTTGGGAGAATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

244

Amino Acids

26.99

Weight (kDa)

8.79

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	26 - 204	3.3e-23	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019805)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G006800_v2.0.a1
pyrus_communis	pycom14g00280
rosa_chinensis	RchiOBHm_Chr5g0049451
rosa_multiflora	Rmu_co8185098.1_g000001
rosa_samantha	Rh5BG336100 Rh5BG336200 Rh5DG348400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc16I	TGCGCA	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	2 cut(s)	175, 338
AclWI	GGATC	5 cut(s)	74, 87, 181, 224, 237
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	726
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	196, 317
AflII	CTTAAG	2 cut(s)	548, 560
AgsI	TTSAA	2 cut(s)	427, 502
AjnI	CCWGG	3 cut(s)	70, 75, 439
AluBI	AGCT	5 cut(s)	67, 131, 290, 498, 532
AluI	AGCT	5 cut(s)	67, 131, 290, 498, 532
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	5 cut(s)	74, 87, 181, 224, 237
AoxI	GGCC	3 cut(s)	12, 32, 73
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	2 cut(s)	79, 229
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	188, 621
BciT130I	CCWGG	3 cut(s)	72, 77, 441
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	2 cut(s)	548, 560
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	132, 339
BlsI	GCNGC	2 cut(s)	133, 340
Bme1390I	CCNGG	3 cut(s)	72, 77, 441
BmiI	GGNNCC	3 cut(s)	81, 231, 633
BmrFI	CCNGG	3 cut(s)	72, 77, 441
BmsI	GCATC	3 cut(s)	393, 504, 703
BpmI	CTGGAG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 317
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	3 cut(s)	72, 77, 441
BseLI	CCNNNNNNNGG	2 cut(s)	196, 317
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	3 cut(s)	14, 34, 75
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	196, 317
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	14, 34, 75
Bsp143I	GATC	3 cut(s)	79, 186, 229
BspACI	CCGC	2 cut(s)	175, 338
BspANI	GGCC	3 cut(s)	14, 34, 75
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	81, 231, 633
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	5 cut(s)	74, 87, 181, 224, 237
BspTI	CTTAAG	2 cut(s)	548, 560
BsrI	ACTGG	1 cut(s)	593
BssMI	GATC	3 cut(s)	79, 186, 229
Bst2UI	CCWGG	3 cut(s)	72, 77, 441
Bst4CI	ACNGT	3 cut(s)	368, 403, 478
BstAFI	CTTAAG	2 cut(s)	548, 560
BstC8I	GCNNGC	3 cut(s)	136, 343, 519
BstDEI	CTNAG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	82, 189, 232
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	3 cut(s)	79, 186, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 344
BstNI	CCWGG	3 cut(s)	72, 77, 441
BstNSI	RCATGY	2 cut(s)	439, 521
BstSCI	CCNGG	3 cut(s)	70, 75, 439
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	3 cut(s)	79, 186, 229
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	3 cut(s)	79, 186, 229
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	14, 34, 75
BtgZI	GCGATG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	373, 474
Cac8I	GCNNGC	3 cut(s)	136, 343, 519
CfoI	GCGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	8 cut(s)	10, 167, 416, 436, 481, 518, 628, 674
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	3 cut(s)	81, 188, 231
DpnII	GATC	3 cut(s)	79, 186, 229
DraIII	CACNNNGTG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	70, 75, 439
EcoRV	GATATC	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	519
FaeI	CATG	8 cut(s)	13, 170, 419, 439, 484, 521, 631, 677
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	8 cut(s)	9, 166, 415, 435, 480, 517, 627, 673
Fnu4HI	GCNGC	2 cut(s)	132, 339
Fsp4HI	GCNGC	2 cut(s)	132, 339
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	132, 339
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	3 cut(s)	14, 34, 75
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	8 cut(s)	13, 170, 419, 439, 484, 521, 631, 677
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	293, 661, 700
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	1 cut(s)	586
Hpy188III	TCNNGA	2 cut(s)	83, 233
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	368, 403, 478
HpyCH4V	TGCA	5 cut(s)	110, 182, 274, 517, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 344
HpyF3I	CTNAG	1 cut(s)	648
Hsp92II	CATG	8 cut(s)	13, 170, 419, 439, 484, 521, 631, 677
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	79, 186, 229
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	3 cut(s)	393, 504, 703
MaeIII	GTNAC	2 cut(s)	209, 218
MalI	GATC	3 cut(s)	81, 188, 231
MboI	GATC	3 cut(s)	79, 186, 229
MboII	GAAGA	2 cut(s)	106, 523
MflI	RGATCY	3 cut(s)	79, 186, 229
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	3 cut(s)	99, 542, 726
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	56, 220
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	6 cut(s)	141, 149, 378, 549, 561, 639
MslI	CAYNNNNRTG	3 cut(s)	20, 434, 479
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	2 cut(s)	548, 560
MspR9I	CCNGG	3 cut(s)	72, 77, 441
MvaI	CCWGG	3 cut(s)	72, 77, 441
MwoI	GCNNNNNNNGC	2 cut(s)	31, 344
NdeII	GATC	3 cut(s)	79, 186, 229
NlaIII	CATG	8 cut(s)	13, 170, 419, 439, 484, 521, 631, 677
NlaIV	GGNNCC	3 cut(s)	81, 231, 633
NsbI	TGCGCA	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	2 cut(s)	439, 521
PaeI	GCATGC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	293, 661
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	133, 340
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	29
Psp6I	CCWGG	3 cut(s)	70, 75, 439
PspGI	CCWGG	3 cut(s)	70, 75, 439
PspN4I	GGNNCC	3 cut(s)	81, 231, 633
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	3 cut(s)	79, 186, 229
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	3 cut(s)	20, 434, 479
SaqAI	TTAA	6 cut(s)	141, 149, 378, 549, 561, 639
SatI	GCNGC	2 cut(s)	132, 339
Sau3AI	GATC	3 cut(s)	79, 186, 229
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	3 cut(s)	72, 77, 441
SetI	ASST	6 cut(s)	69, 133, 292, 336, 500, 534
SfaNI	GCATC	3 cut(s)	393, 504, 703
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	3 cut(s)	20, 434, 479
SmlI	CTYRAG	2 cut(s)	548, 560
SmoI	CTYRAG	2 cut(s)	548, 560
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	3 cut(s)	99, 542, 726
SsiI	CCGC	2 cut(s)	175, 338
StyD4I	CCNGG	3 cut(s)	70, 75, 439
TaaI	ACNGT	3 cut(s)	368, 403, 478
TaqI	TCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	99, 542, 726
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	293, 661
Tru1I	TTAA	6 cut(s)	141, 149, 378, 549, 561, 639
Tru9I	TTAA	6 cut(s)	141, 149, 378, 549, 561, 639
TscAI	CASTG	2 cut(s)	373, 481
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	643
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	2 cut(s)	373, 481
Van91I	CCANNNNNTGG	1 cut(s)	317
Vha464I	CTTAAG	2 cut(s)	548, 560
XapI	RAATTY	1 cut(s)	726
XceI	RCATGY	2 cut(s)	439, 521
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.