Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011259

Physical Location & Seq

Genomic Coordinates Forward (+)

892721 .. 897670

Gene Structure 4950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATCTGGGTCATCTTCTACACCTCCTAATTCCCTCATGGAACTCTGTTGCTATTCTAGCATCGTTCTTCGCTTACTTGGCCATTGCTGGATCTTTACTGCCCGGAAAACTTGTCCCCGGAGCCACCCTACCGGACGGCTCTCGGCTTCATTATCGATGCAATGGTCTGCTATCACTTCTATTGCTGGGTGGGCTTCTTGGGATCGGCGCTAAGATGGATATCGTATCGCTTACTGCAATATCAGATAGAGGACTCGAGCTGTTATCAACAACCTTTCTGTTTAGTGTTCTGGTCACAATCATACTTTACGCTGCGGGCTGCAAGTCAACCAACCGGGGTTCTTCCCTGAAGCCTCATGTCACAGGGAACCTTCTTGAGGACTGGTGGTTTGGAATACAGCTTAATCCTCAGTTTATGGGCATTGACCTCAAATTTTTCTTTGTTAGAGCCGGAATGATGGGCTGGCTATTTATCAACCTTTCGGTTCTCGCCAGAAGTGTTCAAGATGGTACCTTGAGTCAATCAATCGATCCTCTTCCAGTTGTTTTGTGCGACATCTTGGACTACTTTGTTCATGAGGAGTACATGACCTCCACATGGGACATAATCGCAGAGAGACTAGGCTTCATGCTGGTATTTGGAGATCTAGTCTGGATTCCGTTCACTTTCAGCATCCAGGGATGGTGGCTTCTGAGCAATAAGGTGGAGTTAGGAACAGCGGCTGTTGTAGCAAATTGCTTGACATTTCTGATTGGGTACCTTGTATTCAGAGGAGCCAACAAGCAAAAGCACGTCTTTAAGAAGAATCCCAAAGCACCCATATGGGGTAAGCCCGCGAGGGTCATTGGGGGAAAGTTGCTTGCTTCTGGTTATTGGGGAATTGCAAGACACTGTAATTACCTCGGGGACTTGTTACTTGCATTGTCTTTCAGCTTGCCTTGCGGGAAAAGTTCCCCAGTTCCATACTTCTATCCAATTTATCTTCTTATTCTGCTCATATGGAGAGAAAGACGAGACGAAGCTCGCTGTGCTGAGAAGTATAGAGAGATCTGGGCCGAATACCGCCGGCTTGTTCCATGGAGAATATTACCTTATGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016627 GO:0016628 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0036094 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050613 GO:0050661 GO:0050662 GO:0055114 GO:0097159 GO:0098827 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

369

Amino Acids

41.3

Weight (kDa)

9.08

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERG4_ERG24	PF01222	10 - 368	5.3e-92	Ergosterol biosynthesis ERG4/ERG24 family
DUF1295	PF06966	207 - 348	6.2e-07	Protein of unknown function (DUF1295)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52940
fragaria_vesca	FvH4_6g17830 FvH4_6g17830
malus_domestica	MD12G1017500.v1.1 MD14G1015200.v1.1
prunus_persica	Prupe.7G118200_v2.0.a1 Prupe.7G118200_v2.0.a1 Prupe.8G104900_v2.0.a1
pyrus_communis	pycom12g01410 pycom14g01270
rosa_chinensis	RchiOBHm_Chr3g0472081
rosa_laevigata	RLG00000024106
rosa_multiflora	Rmu_sc0002532.1_g000014
rosa_roxburghii	Rroxscaffold_6G00409260
rosa_rugosa	Rorug03G0122000
rosa_samantha	Rh3AG173800 Rh3BG199200 Rh3CG197700 Rh3DG175300
rosa_wichuraiana	Rw3G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	512, 759
AccB1I	GGYRCC	2 cut(s)	512, 759
AccII	CGCG	1 cut(s)	839
AciI	CCGC	5 cut(s)	317, 722, 837, 945, 1066
AclWI	GGATC	4 cut(s)	12, 100, 212, 527
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	514, 587, 761
AfiI	CCNNNNNNNGG	3 cut(s)	379, 600, 827
AgsI	TTSAA	1 cut(s)	506
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	262, 403, 936, 1025
AluI	AGCT	4 cut(s)	262, 403, 936, 1025
Alw26I	GTCTC	2 cut(s)	613, 1011
AlwI	GGATC	4 cut(s)	12, 100, 212, 527
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	2 cut(s)	257, 905
AoxI	GGCC	2 cut(s)	81, 1056
ApeKI	GCWGC	2 cut(s)	314, 321
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
Asp718I	GGTACC	2 cut(s)	512, 759
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	1056
AsuC2I	CCSGG	3 cut(s)	105, 120, 338
AvaI	CYCGRG	2 cut(s)	257, 905
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	512, 759
BbvI	GCAGC	2 cut(s)	301, 308
BccI	CCATC	4 cut(s)	211, 454, 503, 678
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	680
BcnI	CCSGG	3 cut(s)	105, 120, 338
BcoDI	GTCTC	2 cut(s)	613, 1011
BfaI	CTAG	3 cut(s)	59, 623, 650
BfoI	RGCGCY	1 cut(s)	213
BglII	AGATCT	2 cut(s)	646, 1050
BisI	GCNGC	3 cut(s)	315, 322, 723
BlsI	GCNGC	3 cut(s)	316, 323, 724
Bme1390I	CCNGG	4 cut(s)	105, 120, 338, 680
BmeT110I	CYCGRG	2 cut(s)	257, 905
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	1056
BmiI	GGNNCC	5 cut(s)	124, 371, 514, 761, 778
BmrFI	CCNGG	4 cut(s)	105, 120, 338, 680
BmrI	ACTGGG	1 cut(s)	953
BmsI	GCATC	3 cut(s)	71, 149, 684
BmuI	ACTGGG	1 cut(s)	953
BpuEI	CTTGAG	2 cut(s)	398, 538
BpuMI	CCSGG	3 cut(s)	105, 120, 338
Bsa29I	ATCGAT	2 cut(s)	157, 531
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	5 cut(s)	118, 337, 679, 904, 1079
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	578, 608, 636, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 600, 827
Bse118I	RCCGGY	1 cut(s)	1068
Bse1I	ACTGG	3 cut(s)	389, 542, 959
Bse3DI	GCAATG	2 cut(s)	84, 169
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	680
BseCI	ATCGAT	2 cut(s)	157, 531
BseDI	CCNNGG	5 cut(s)	118, 337, 679, 904, 1079
BseGI	GGATG	2 cut(s)	675, 689
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	379, 600, 827
BseMI	GCAATG	2 cut(s)	84, 169
BseMII	CTCAG	3 cut(s)	425, 686, 1026
BseNI	ACTGG	3 cut(s)	389, 542, 959
BseRI	GAGGAG	2 cut(s)	596, 789
BseXI	GCAGC	2 cut(s)	301, 308
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	839
BshFI	GGCC	2 cut(s)	83, 1058
BshNI	GGYRCC	2 cut(s)	512, 759
BshVI	ATCGAT	2 cut(s)	157, 531
BsiHKCI	CYCGRG	2 cut(s)	257, 905
BsiSI	CCGG	6 cut(s)	105, 120, 134, 337, 453, 1069
BslFI	GGGAC	3 cut(s)	101, 617, 923
BslI	CCNNNNNNNGG	3 cut(s)	379, 600, 827
BsmAI	GTCTC	2 cut(s)	613, 1011
BsmBI	CGTCTC	1 cut(s)	1011
BsmFI	GGGAC	3 cut(s)	101, 617, 923
BsnI	GGCC	2 cut(s)	83, 1058
BsoBI	CYCGRG	2 cut(s)	257, 905
Bsp143I	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
Bsp19I	CCATGG	1 cut(s)	1079
BspACI	CCGC	5 cut(s)	317, 722, 837, 945, 1066
BspANI	GGCC	2 cut(s)	83, 1058
BspCNI	CTCAG	3 cut(s)	424, 687, 1027
BspDI	ATCGAT	2 cut(s)	157, 531
BspFNI	CGCG	1 cut(s)	839
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	124, 371, 514, 761, 778
BspPI	GGATC	4 cut(s)	12, 100, 212, 527
BspT107I	GGYRCC	2 cut(s)	512, 759
BsrDI	GCAATG	2 cut(s)	84, 169
BsrFI	RCCGGY	1 cut(s)	1068
BsrI	ACTGG	3 cut(s)	389, 542, 959
BssAI	RCCGGY	1 cut(s)	1068
BssECI	CCNNGG	5 cut(s)	118, 337, 679, 904, 1079
BssMI	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
BssT1I	CCWWGG	1 cut(s)	1079
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	896
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	7 cut(s)	319, 467, 837, 864, 938, 1027, 1070
BstDEI	CTNAG	4 cut(s)	213, 411, 695, 1035
BstDSI	CCRYGG	1 cut(s)	1079
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	675, 689
BstFNI	CGCG	1 cut(s)	839
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	6 cut(s)	7, 95, 207, 535, 649, 1053
BstMAI	GTCTC	2 cut(s)	613, 1011
BstMBI	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 80, 193, 731, 942, 1031
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	4 cut(s)	103, 118, 336, 678
BstUI	CGCG	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	301, 308
BstX2I	RGATCY	4 cut(s)	4, 92, 646, 1050
BstYI	RGATCY	4 cut(s)	4, 92, 646, 1050
Bsu15I	ATCGAT	2 cut(s)	157, 531
BsuRI	GGCC	2 cut(s)	83, 1058
BsuTUI	ATCGAT	2 cut(s)	157, 531
BtgI	CCRYGG	1 cut(s)	1079
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	2 cut(s)	675, 689
BtsIMutI	CAGTG	1 cut(s)	892
Cac8I	GCNNGC	7 cut(s)	319, 467, 837, 864, 938, 1027, 1070
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	1068
Cfr13I	GGNCC	1 cut(s)	1056
ClaI	ATCGAT	2 cut(s)	157, 531
Csp6I	GTAC	3 cut(s)	513, 586, 760
CviAII	CATG	7 cut(s)	39, 359, 578, 589, 600, 631, 1080
CviQI	GTAC	3 cut(s)	513, 586, 760
DdeI	CTNAG	4 cut(s)	213, 411, 695, 1035
DpnI	GATC	6 cut(s)	6, 94, 206, 534, 648, 1052
DpnII	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	1079
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	2 cut(s)	257, 905
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	1079
ErhI	CCWWGG	1 cut(s)	1079
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	7 cut(s)	42, 362, 581, 592, 603, 634, 1083
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	3 cut(s)	101, 617, 923
FatI	CATG	7 cut(s)	38, 358, 577, 588, 599, 630, 1079
FauI	CCCGC	3 cut(s)	310, 844, 938
FauNDI	CATATG	2 cut(s)	824, 1001
Fnu4HI	GCNGC	3 cut(s)	315, 322, 723
FokI	GGATG	2 cut(s)	662, 696
Fsp4HI	GCNGC	3 cut(s)	315, 322, 723
FspBI	CTAG	3 cut(s)	59, 623, 650
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	315, 322, 723
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	83, 1058
HapII	CCGG	6 cut(s)	105, 120, 134, 337, 453, 1069
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	7 cut(s)	42, 362, 581, 592, 603, 634, 1083
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	4 cut(s)	255, 520, 658, 808
HpaII	CCGG	6 cut(s)	105, 120, 134, 337, 453, 1069
Hpy166II	GTNNAC	2 cut(s)	330, 666
Hpy188I	TCNGA	4 cut(s)	247, 696, 753, 773
Hpy188III	TCNNGA	4 cut(s)	377, 506, 578, 655
Hpy8I	GTNNAC	2 cut(s)	330, 666
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	5 cut(s)	162, 239, 324, 887, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 80, 193, 731, 942, 1031
HpyF3I	CTNAG	4 cut(s)	213, 411, 695, 1035
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	7 cut(s)	42, 362, 581, 592, 603, 634, 1083
HspAI	GCGC	1 cut(s)	210
KpnI	GGTACC	2 cut(s)	516, 763
KroI	GCCGGC	1 cut(s)	1068
KroNI	GCCGGC	1 cut(s)	1070
Kzo9I	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
LmnI	GCTCC	2 cut(s)	122, 776
Lsp1109I	GCAGC	2 cut(s)	301, 308
LweI	GCATC	3 cut(s)	71, 149, 684
MaeI	CTAG	3 cut(s)	59, 623, 650
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	3 cut(s)	295, 361, 915
MalI	GATC	6 cut(s)	6, 94, 206, 534, 648, 1052
MboI	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
MboII	GAAGA	6 cut(s)	8, 61, 336, 530, 817, 977
MflI	RGATCY	4 cut(s)	4, 92, 646, 1050
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	6 cut(s)	30, 434, 736, 882, 898, 978
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	249, 529
Mox20I	TGGCCA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	1068
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	3 cut(s)	405, 801, 1105
MslI	CAYNNNNRTG	1 cut(s)	823
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	6 cut(s)	105, 120, 134, 337, 453, 1069
MspR9I	CCNGG	4 cut(s)	105, 120, 338, 680
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	1 cut(s)	839
MwoI	GCNNNNNNNGC	6 cut(s)	59, 80, 193, 731, 942, 1031
NaeI	GCCGGC	1 cut(s)	1070
NciI	CCSGG	3 cut(s)	105, 120, 338
NcoI	CCATGG	1 cut(s)	1079
NdeI	CATATG	2 cut(s)	824, 1001
NdeII	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
NgoMIV	GCCGGC	1 cut(s)	1068
NlaIII	CATG	7 cut(s)	42, 362, 581, 592, 603, 634, 1083
NlaIV	GGNNCC	5 cut(s)	124, 371, 514, 761, 778
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	295, 361
PaeR7I	CTCGAG	1 cut(s)	257
PagI	TCATGA	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	1070
PfeI	GAWTC	2 cut(s)	658, 808
PkrI	GCNGC	3 cut(s)	316, 323, 724
PleI	GAGTC	2 cut(s)	249, 528
PpsI	GAGTC	2 cut(s)	249, 528
Psp6I	CCWGG	1 cut(s)	678
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	5 cut(s)	124, 371, 514, 761, 778
PspPI	GGNCC	1 cut(s)	1056
PspXI	VCTCGAGB	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	4 cut(s)	4, 92, 646, 1050
RsaI	GTAC	3 cut(s)	514, 587, 761
RsaNI	GTAC	3 cut(s)	513, 586, 760
RseI	CAYNNNNRTG	1 cut(s)	823
SaqAI	TTAA	3 cut(s)	405, 801, 1105
SatI	GCNGC	3 cut(s)	315, 322, 723
Sau3AI	GATC	6 cut(s)	4, 92, 204, 532, 646, 1050
Sau96I	GGNCC	1 cut(s)	1056
SchI	GAGTC	2 cut(s)	249, 529
ScrFI	CCNGG	4 cut(s)	105, 120, 338, 680
SfaNI	GCATC	3 cut(s)	71, 149, 684
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	823
SmlI	CTYRAG	3 cut(s)	257, 377, 517
SmoI	CTYRAG	3 cut(s)	257, 377, 517
Sse9I	AATT	6 cut(s)	30, 434, 736, 882, 898, 978
SsiI	CCGC	5 cut(s)	317, 722, 837, 945, 1066
SspI	AATATT	1 cut(s)	1089
SspMI	CTAG	3 cut(s)	59, 623, 650
StyD4I	CCNGG	4 cut(s)	103, 118, 336, 678
StyI	CCWWGG	1 cut(s)	1079
TaaI	ACNGT	1 cut(s)	896
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	3 cut(s)	157, 258, 531
TasI	AATT	6 cut(s)	30, 434, 736, 882, 898, 978
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	658, 808
Tru1I	TTAA	3 cut(s)	405, 801, 1105
Tru9I	TTAA	3 cut(s)	405, 801, 1105
TscAI	CASTG	1 cut(s)	899
TseFI	GTSAC	2 cut(s)	295, 361
TseI	GCWGC	2 cut(s)	314, 321
Tsp45I	GTSAC	2 cut(s)	295, 361
TspDTI	ATGAA	3 cut(s)	140, 566, 619
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	899
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	257
XspI	CTAG	3 cut(s)	59, 623, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.