pycom14g02040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014416
Physical Location & Seq
Forward (+)
1585815 .. 1586222
408 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGGCTTCTCTCGTCGAAGGGTCCCCTTCCACACAATGTGCTGGACTGTGTAAAGGCCTAGCAGACATCGAAGACGAAGAAGATCTCTTTGAGATCGATCTCGATTTGATTGACAGCGTTCCTCAAACACAGTACTACTGGAACAGGTATTTCACTGCGACCGGAAATGCACTGCTTGCCAATTGCCTACTGCCGGCCACCGACATCTCCCGTGCCATCCCCGTGGTTTCGAAGGCACTGTCGTCGTCGGAGCAGACTGGTAATGTTGTTATTGTCCCGCAAGCTGTGCCCTTGGGGCAGCTTCTAGGGTTGCCATTCCAGGAGGCATTTGGGCTTCACCTAAAGGAAGTGAAACAAATGTGCAATCCGATTAGGAAAAATGTTCCATCATTTGGACGTTGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.69

Weight (kDa)

4.59

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36295
fragaria_vesca FvH4_6g18470
malus_domestica MD12G1023800.v1.1 MD14G1021000.v1.1
prunus_persica Prupe.7G112700_v2.0.a1
pyrus_communis pycom12g02220 pycom14g02040
rosa_chinensis RchiOBHm_Chr3g0473001
rosa_laevigata RLG00000024038
rosa_multiflora Rmu_sc0010986.1_g000005
rosa_roxburghii Rroxscaffold_6G00408410
rosa_rugosa Rorug03G0130600
rosa_samantha Rh3AG182400 Rh3BG208700 Rh3CG205700 Rh3DG167300
rosa_wichuraiana Rw3G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AciI CCGC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 38
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 193, 392
AhdI GACNNNNNGTC 1 cut(s) 401
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 2 cut(s) 284, 301
AluI AGCT 2 cut(s) 284, 301
AoxI GGCC 2 cut(s) 55, 195
ApeKI GCWGC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 224, 394
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 320
BfaI CTAG 2 cut(s) 59, 305
BglI GCCNNNNNGGC 1 cut(s) 295
BglII AGATCT 1 cut(s) 82
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 21
BmeRI GACNNNNNGTC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 22, 23
BmrFI CCNGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 230
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 222, 291
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 392
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 143, 262
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 222, 291
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 193, 392
BseNI ACTGG 2 cut(s) 143, 262
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 57, 197
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 162, 194
BslFI GGGAC 2 cut(s) 7, 260
BslI CCNNNNNNNGG 2 cut(s) 193, 392
BsmFI GGGAC 2 cut(s) 7, 260
BsnI GGCC 2 cut(s) 57, 197
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 82, 93, 97
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 57, 197
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 22, 23
BspT104I TTCGAA 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 2 cut(s) 143, 262
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 222, 291
BssMI GATC 3 cut(s) 82, 93, 97
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 48, 132, 240
BstAPI GCANNNNNTGC 2 cut(s) 176, 286
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 177, 195, 282
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 3 cut(s) 85, 96, 100
BstMBI GATC 3 cut(s) 82, 93, 97
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 176, 286, 295
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 2 cut(s) 57, 197
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 216
BtsI GCAGTG 2 cut(s) 153, 170
BtsIMutI CAGTG 3 cut(s) 153, 170, 236
Cac8I GCNNGC 3 cut(s) 177, 195, 282
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 6 cut(s) 5, 57, 197, 284, 301, 334
CviKI_1 RGCY 6 cut(s) 5, 57, 197, 284, 301, 334
CviQI GTAC 1 cut(s) 133
DpnI GATC 3 cut(s) 84, 95, 99
DpnII GATC 3 cut(s) 82, 93, 97
DraIII CACNNNGTG 1 cut(s) 38
DriI GACNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaqI GGGAC 2 cut(s) 7, 260
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 2 cut(s) 59, 305
GluI GCNGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 57, 197
HapII CCGG 2 cut(s) 162, 194
HpaII CCGG 2 cut(s) 162, 194
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 250, 369, 407
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 3 cut(s) 17, 247, 250
HpyAV CCTTC 3 cut(s) 11, 36, 226
HpyCH4III ACNGT 3 cut(s) 48, 132, 240
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 2 cut(s) 170, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 286, 295
HpySE526I ACGT 1 cut(s) 397
KflI GGGWCCC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 82, 93, 97
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 8 cut(s) 27, 124, 130, 175, 207, 243, 305, 332
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 2 cut(s) 59, 305
MaeII ACGT 1 cut(s) 397
MalI GATC 3 cut(s) 84, 95, 99
MboI GATC 3 cut(s) 82, 93, 97
MboII GAAGA 3 cut(s) 83, 89, 92
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 2 cut(s) 132, 316
MroNI GCCGGC 1 cut(s) 193
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 2 cut(s) 162, 194
MspR9I CCNGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 3 cut(s) 176, 286, 295
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 3 cut(s) 82, 93, 97
NgoMIV GCCGGC 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 22, 23
NspV TTCGAA 1 cut(s) 230
PceI AGGCCT 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 22, 23
PspPI GGNCC 1 cut(s) 21
PspPPI RGGWCCY 1 cut(s) 21
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 221
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 3 cut(s) 82, 93, 97
Sau96I GGNCC 1 cut(s) 21
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 149, 286, 303, 342, 400
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 1 cut(s) 181
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 1 cut(s) 278
SspMI CTAG 2 cut(s) 59, 305
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 48, 132, 240
TaiI ACGT 1 cut(s) 400
TaqI TCGA 5 cut(s) 15, 69, 96, 102, 230
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 132
TscAI CASTG 3 cut(s) 160, 177, 243
TseI GCWGC 1 cut(s) 298
TspRI CASTG 3 cut(s) 160, 177, 243
Van91I CCANNNNNTGG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 2 cut(s) 59, 305
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.