pycom14g06190

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0019829
Physical Location & Seq
Forward (+)
6028634 .. 6029207
574 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g06190.3

Sequence Viewer

Length: 405 bp
ATGGCCGAGCTTGCATTTATGCTGGCAGCCAAACTCATTGAAAGGCTCAGCCCCATTGCTTCTGAGGAGATTTGCTTGGCGTGGGGCGTTAAAGTGGATCTGCAAAAGCTTGGGCGCACCATGTCCACCATCAAAGACGTTTACGCAGTTGGCTACGACAACTTAAAGATGTGTTCCTTGATACAGAGGATCTGTTGGACGAGTTTGAATGCGAAGCTTTGCGAAGGCAAGTGGTTCGTGGCAGTGGCACAACTAGAAAGTGTTCATCTCGGTGATCATGTGAGGGAGAATAGGAATACGACCCACTCCTTTGTCCGTGCTTCGGAGGTTATTGGTAGAGAAACAGAAAAAAATGAAGTTATAGATCTCTTGGTACAAGGCGATCGATCATCAAGGTGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

135

Amino Acids

15.18

Weight (kDa)

7.68

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019829)

Species Orthologous Gene IDs
pyrus_communis pycom14g06190
rosa_multiflora Rmu_co8262551.1_g000001 Rmu_sc0008322.1_g000019
rosa_roxburghii Rroxscaffold_2G00152090
rosa_rugosa Rorug01G0488700
rosa_samantha Rh2AG044800 Rh3BG279700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 105, 197
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 41, 208
AluBI AGCT 3 cut(s) 10, 109, 217
AluI AGCT 3 cut(s) 10, 109, 217
AlwI GGATC 2 cut(s) 105, 197
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 284
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 254
BglII AGATCT 1 cut(s) 364
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 28
Bpu1102I GCTNAGC 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 54, 61
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 385
BsiEI CGRYCG 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 322
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 6 cut(s) 97, 189, 274, 364, 382, 386
Bsp1720I GCTNAGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 55, 60
BspDI ATCGAT 1 cut(s) 385
BspPI GGATC 2 cut(s) 105, 197
BsrDI GCAATG 1 cut(s) 54
BssMI GATC 6 cut(s) 97, 189, 274, 364, 382, 386
BstC8I GCNNGC 2 cut(s) 12, 24
BstDEI CTNAG 2 cut(s) 47, 63
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 6 cut(s) 100, 192, 277, 367, 385, 389
BstMBI GATC 6 cut(s) 97, 189, 274, 364, 382, 386
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 3 cut(s) 97, 189, 364
BstYI RGATCY 3 cut(s) 97, 189, 364
Bsu15I ATCGAT 1 cut(s) 385
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 12, 24
CfoI GCGC 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 385
Csp6I GTAC 1 cut(s) 374
CviAII CATG 2 cut(s) 121, 278
CviJI RGCY 8 cut(s) 5, 10, 29, 46, 51, 109, 153, 217
CviKI_1 RGCY 8 cut(s) 5, 10, 29, 46, 51, 109, 153, 217
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 2 cut(s) 47, 63
DpnI GATC 6 cut(s) 99, 191, 276, 366, 384, 388
DpnII GATC 6 cut(s) 97, 189, 274, 364, 382, 386
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 2 cut(s) 124, 281
FaiI YATR 4 cut(s) 20, 122, 279, 362
FatI CATG 2 cut(s) 120, 277
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 124, 281
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 107, 215
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 126, 142
Hpy188I TCNGA 2 cut(s) 64, 325
Hpy8I GTNNAC 2 cut(s) 126, 142
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 14, 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 47, 63
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 124, 281
HspAI GCGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 97, 189, 274, 364, 382, 386
LpnPI CCDG 1 cut(s) 8
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 138
MalI GATC 6 cut(s) 99, 191, 276, 366, 384, 388
MboI GATC 6 cut(s) 97, 189, 274, 364, 382, 386
MflI RGATCY 3 cut(s) 97, 189, 364
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 4 cut(s) 58, 180, 276, 319
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 2 cut(s) 90, 164
MslI CAYNNNNRTG 2 cut(s) 270, 394
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 6 cut(s) 97, 189, 274, 364, 382, 386
NlaIII CATG 2 cut(s) 124, 281
NmeAIII GCCGAG 1 cut(s) 31
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 28
Ple19I CGATCG 1 cut(s) 385
PsuI RGATCY 3 cut(s) 97, 189, 364
PvuI CGATCG 1 cut(s) 385
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 2 cut(s) 270, 394
SaqAI TTAA 2 cut(s) 90, 164
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 6 cut(s) 97, 189, 274, 364, 382, 386
SetI ASST 6 cut(s) 12, 111, 141, 219, 330, 398
SmiMI CAYNNNNRTG 2 cut(s) 270, 394
SspMI CTAG 1 cut(s) 254
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 385
Tru1I TTAA 2 cut(s) 90, 164
Tru9I TTAA 2 cut(s) 90, 164
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 254, 369
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.