Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009378

Physical Location & Seq

Genomic Coordinates Reverse (-)

57396790 .. 57399860

Gene Structure 3071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0488700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAATAGCTGCAGTACTGGAGGTGGGGGCGGGGTTGGGGTTGGGGTTGGGGGTAATAGTACTGGGAATCTGATGGGAATGGGGATGGGGATGGGGATGAGGTCACCTTTTACAGTGTCTCAGTGGCAAGAGCTGGAGCATCAGGCCCTGATCTTCAAGTATATGATGGCAGGCATGCCTGTGCCTCCTGATCTCGTGCTCCCTATTCAGAAGAGTTTTGAGTCCATCTCTCAGAGATTCTTCCATCATCCCACCATGGGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGCTGCAGGAGGACTGATGGCAAGAAATGGAGGTGCTCAAAGGATGCATACCCCGACTCGAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACAATGACACAGTCATCGTCCACTGTGACATCATTGACTGTCACTGGAACCAGCAGTGGAACTGGGAGCTTCCAGACCCTTCCATTAAATTCCTTCGGGAATACCCAAGGCGCCAGTTCCGGAACCAATCAGTCTCATTATCAAATAGACTCTATTCCCTTTGGAATCCCGAACAAAGATTATAGGTATCTTCAAGGACTTAAACCTGAAATCGGTGAGCATAGTTTTTTCTCTGATACTTCAGGAAGCAACAGGGGTCTCCACATGGACTCACCAATAGACAACACATGGCCTCTGATGCCATCGAGAGTTGCCTCATTTCCAGCATCAAAATCGGGTGATGGCTCCGTTTTGCAGAACGATTATCCACAGCATTCAATTTTCAATAATGACTTCCCCTCGGGGGAACCTTTGAAACAGGAAGGTCAGTCTCTCCGACCTTTCTTTGATGAGTGGCCTAAAGGCCGAGATTCCTGGTCTGGTCTTGAGGATGAGAGATCCAACCAAACCTCATTCTCCACAACCCAGCTCTCAATATCAATTCCAATGACTTCTTCCGACTTCTCTGCAACAAGTTCTCAATCTCCACATGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009791 GO:0009889 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016277 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

PrmA

Protein Analysis

341

Amino Acids

37.43

Weight (kDa)

7.14

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	36 - 70	4.6e-16	QLQ
WRC	PF08879	98 - 140	4e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04870
fragaria_vesca	FvH4_1g03880 FvH4_1g03880 FvH4_1g03880 FvH4_1g03880
malus_domestica	MD02G1037100.v1.1 MD15G1177300.v1.1
prunus_persica	Prupe.7G238300_v2.0.a1
pyrus_communis	pycom02g03040 pycom15g15860
rosa_chinensis	RchiOBHm_Chr2g0089261 RchiOBHm_Chr2g0089341
rosa_laevigata	RLG00000016009
rosa_multiflora	Rmu_sc0003382.1_g000036 Rmu_sc0008322.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152080
rosa_rugosa	Rorug01G0488700
rosa_samantha	Rh2AG044900 Rh2BG043400 Rh2CG044800 Rh2DG043700
rosa_wichuraiana	Rw2G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccIII	TCCGGA	1 cut(s)	545
AciI	CCGC	2 cut(s)	30, 394
AclWI	GGATC	1 cut(s)	918
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	3 cut(s)	16, 61, 368
AfiI	CCNNNNNNNGG	5 cut(s)	257, 276, 299, 638, 829
AgsI	TTSAA	6 cut(s)	157, 405, 620, 804, 811, 841
AjnI	CCWGG	2 cut(s)	298, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	964, 996
AluBI	AGCT	4 cut(s)	9, 133, 495, 955
AluI	AGCT	4 cut(s)	9, 133, 495, 955
Alw21I	GWGCWC	2 cut(s)	201, 341
Alw26I	GTCTC	4 cut(s)	123, 564, 689, 861
AlwI	GGATC	1 cut(s)	918
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	826
Aor13HI	TCCGGA	1 cut(s)	545
AoxI	GGCC	5 cut(s)	144, 391, 716, 881, 889
ApeKI	GCWGC	2 cut(s)	9, 306
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	2 cut(s)	378, 539
AspS9I	GGNCC	2 cut(s)	145, 289
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	4 cut(s)	96, 653, 690, 776
AvaI	CYCGRG	1 cut(s)	826
AvaII	GGWCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	194
Bbv12I	GWGCWC	2 cut(s)	201, 341
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	9 cut(s)	67, 79, 85, 160, 233, 252, 314, 736, 761
BcgI	CGANNNNNNTGC	4 cut(s)	741, 775, 974, 1008
BciT130I	CCWGG	2 cut(s)	300, 901
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	4 cut(s)	123, 564, 689, 861
BfmI	CTRYAG	2 cut(s)	10, 307
BfoI	RGCGCY	2 cut(s)	379, 540
BisI	GCNGC	3 cut(s)	10, 307, 394
BlsI	GCNGC	3 cut(s)	11, 308, 395
BmcAI	AGTACT	3 cut(s)	16, 61, 368
Bme1390I	CCNGG	3 cut(s)	293, 300, 901
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	826
BmgT120I	GGNCC	2 cut(s)	145, 289
BmiI	GGNNCC	7 cut(s)	291, 297, 475, 538, 550, 772, 834
BmrFI	CCNGG	3 cut(s)	293, 300, 901
BmrI	ACTGGG	2 cut(s)	72, 498
BmsI	GCATC	4 cut(s)	148, 337, 714, 761
BmuI	ACTGGG	2 cut(s)	72, 498
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	2 cut(s)	39, 155
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	4 cut(s)	255, 388, 532, 825
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	5 cut(s)	257, 276, 299, 638, 829
Bse1I	ACTGG	5 cut(s)	22, 67, 475, 493, 540
BseAI	TCCGGA	1 cut(s)	545
BseBI	CCWGG	2 cut(s)	300, 901
BseDI	CCNNGG	4 cut(s)	255, 388, 532, 825
BseGI	GGATG	6 cut(s)	90, 96, 102, 247, 352, 922
BseLI	CCNNNNNNNGG	5 cut(s)	257, 276, 299, 638, 829
BseMII	CTCAG	2 cut(s)	134, 245
BseNI	ACTGG	5 cut(s)	22, 67, 475, 493, 540
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	951
BshFI	GGCC	5 cut(s)	146, 393, 718, 883, 891
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	2 cut(s)	201, 341
BsiHKCI	CYCGRG	1 cut(s)	826
BsiSI	CCGG	2 cut(s)	293, 546
BslI	CCNNNNNNNGG	5 cut(s)	257, 276, 299, 638, 829
BsmAI	GTCTC	4 cut(s)	123, 564, 689, 861
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	5 cut(s)	146, 393, 718, 883, 891
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	826
Bsp1286I	GDGCHC	2 cut(s)	201, 341
Bsp13I	TCCGGA	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	150, 190, 923
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	2 cut(s)	30, 394
BspANI	GGCC	5 cut(s)	146, 393, 718, 883, 891
BspCNI	CTCAG	2 cut(s)	133, 244
BspEI	TCCGGA	1 cut(s)	545
BspLI	GGNNCC	7 cut(s)	291, 297, 475, 538, 550, 772, 834
BspMAI	CTGCAG	2 cut(s)	14, 311
BspPI	GGATC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	689
BsrI	ACTGG	5 cut(s)	22, 67, 475, 493, 540
BssECI	CCNNGG	4 cut(s)	255, 388, 532, 825
BssMI	GATC	3 cut(s)	150, 190, 923
BssNI	GRCGYC	1 cut(s)	537
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	255, 532
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	300, 901
Bst4CI	ACNGT	7 cut(s)	115, 371, 389, 401, 438, 451, 466
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	172, 176
BstDEI	CTNAG	2 cut(s)	120, 231
BstDSI	CCRYGG	2 cut(s)	255, 388
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	6 cut(s)	90, 96, 102, 247, 352, 922
BstH2I	RGCGCY	2 cut(s)	379, 540
BstHHI	GCGC	2 cut(s)	378, 539
BstKTI	GATC	3 cut(s)	153, 193, 926
BstMAI	GTCTC	4 cut(s)	123, 564, 689, 861
BstMBI	GATC	3 cut(s)	150, 190, 923
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 724
BstNI	CCWGG	2 cut(s)	300, 901
BstNSI	RCATGY	2 cut(s)	178, 385
BstPI	GGTNACC	1 cut(s)	102
BstSCI	CCNGG	3 cut(s)	291, 298, 899
BstSFI	CTRYAG	2 cut(s)	10, 307
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	923
BstYI	RGATCY	1 cut(s)	923
BsuRI	GGCC	5 cut(s)	146, 393, 718, 883, 891
BtgI	CCRYGG	2 cut(s)	255, 388
BtsCI	GGATG	6 cut(s)	90, 96, 102, 247, 352, 922
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	5 cut(s)	120, 128, 447, 468, 487
Cac8I	GCNNGC	2 cut(s)	172, 176
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	2 cut(s)	378, 539
Cfr13I	GGNCC	2 cut(s)	145, 289
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	15, 60, 367
CviAII	CATG	6 cut(s)	175, 256, 382, 691, 714, 1016
CviQI	GTAC	3 cut(s)	15, 60, 367
DdeI	CTNAG	2 cut(s)	120, 231
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	3 cut(s)	152, 192, 925
DpnII	GATC	3 cut(s)	150, 190, 923
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	255, 532
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	826
Eco91I	GGTNACC	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	298, 899
EcoT14I	CCWWGG	2 cut(s)	255, 532
EcoT22I	ATGCAT	1 cut(s)	352
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	255, 532
FaeI	CATG	6 cut(s)	178, 259, 385, 694, 717, 1019
FatI	CATG	6 cut(s)	174, 255, 381, 690, 713, 1015
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	10, 307, 394
FokI	GGATG	6 cut(s)	97, 103, 109, 234, 359, 929
Fsp4HI	GCNGC	3 cut(s)	10, 307, 394
GlaI	GCGC	2 cut(s)	377, 538
GluI	GCNGC	3 cut(s)	10, 307, 394
GsaI	CCCAGC	1 cut(s)	955
GsuI	CTGGAG	2 cut(s)	39, 155
HaeII	RGCGCY	2 cut(s)	379, 540
HaeIII	GGCC	5 cut(s)	146, 393, 718, 883, 891
HapII	CCGG	2 cut(s)	293, 546
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	2 cut(s)	378, 539
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	6 cut(s)	178, 259, 385, 694, 717, 1019
Hin6I	GCGC	2 cut(s)	376, 537
HinP1I	GCGC	2 cut(s)	376, 537
HinfI	GANTC	9 cut(s)	67, 221, 237, 359, 419, 575, 591, 695, 896
HpaII	CCGG	2 cut(s)	293, 546
HphI	GGTGA	4 cut(s)	96, 653, 690, 776
Hpy166II	GTNNAC	2 cut(s)	289, 447
Hpy188I	TCNGA	7 cut(s)	72, 210, 234, 661, 723, 863, 985
Hpy188III	TCNNGA	9 cut(s)	188, 405, 499, 523, 546, 595, 669, 732, 911
Hpy8I	GTNNAC	2 cut(s)	289, 447
HpyAV	CCTTC	5 cut(s)	277, 280, 515, 529, 842
HpyCH4III	ACNGT	7 cut(s)	115, 371, 389, 401, 438, 451, 466
HpyCH4V	TGCA	6 cut(s)	12, 309, 350, 385, 781, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 724
HpyF3I	CTNAG	2 cut(s)	120, 231
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	6 cut(s)	178, 259, 385, 694, 717, 1019
HspAI	GCGC	2 cut(s)	376, 537
KasI	GGCGCC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	545
Kzo9I	GATC	3 cut(s)	150, 190, 923
LmnI	GCTCC	5 cut(s)	136, 204, 295, 492, 776
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	4 cut(s)	148, 337, 714, 761
MaeIII	GTNAC	3 cut(s)	102, 451, 466
MalI	GATC	3 cut(s)	152, 192, 925
MboI	GATC	3 cut(s)	150, 190, 923
MboII	GAAGA	6 cut(s)	145, 223, 232, 292, 608, 972
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	2 cut(s)	201, 341
MluCI	AATT	4 cut(s)	514, 804, 966, 1021
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	4 cut(s)	230, 353, 569, 689
MmeI	TCCRAC	3 cut(s)	886, 951, 1008
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	545
MseI	TTAA	2 cut(s)	512, 627
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	2 cut(s)	293, 546
MspR9I	CCNGG	3 cut(s)	293, 300, 901
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	2 cut(s)	300, 901
MwoI	GCNNNNNNNGC	2 cut(s)	382, 724
NarI	GGCGCC	1 cut(s)	537
NciI	CCSGG	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	3 cut(s)	150, 190, 923
NlaIII	CATG	6 cut(s)	178, 259, 385, 694, 717, 1019
NlaIV	GGNNCC	7 cut(s)	291, 297, 475, 538, 550, 772, 834
NmeAIII	GCCGAG	1 cut(s)	917
NmuCI	GTSAC	3 cut(s)	102, 451, 466
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	178, 385
PaeI	GCATGC	1 cut(s)	178
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	5 cut(s)	67, 237, 419, 591, 896
PflFI	GACNNNGTC	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	11, 308, 395
PleI	GAGTC	4 cut(s)	229, 353, 569, 689
PluTI	GGCGCC	1 cut(s)	540
PpsI	GAGTC	4 cut(s)	229, 353, 569, 689
Psp6I	CCWGG	2 cut(s)	298, 899
PspEI	GGTNACC	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	2 cut(s)	298, 899
PspN4I	GGNNCC	7 cut(s)	291, 297, 475, 538, 550, 772, 834
PspPI	GGNCC	2 cut(s)	145, 289
PstI	CTGCAG	2 cut(s)	14, 311
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	923
PsyI	GACNNNGTC	1 cut(s)	436
RsaI	GTAC	3 cut(s)	16, 61, 368
RsaNI	GTAC	3 cut(s)	15, 60, 367
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	512, 627
SatI	GCNGC	3 cut(s)	10, 307, 394
Sau3AI	GATC	3 cut(s)	150, 190, 923
Sau96I	GGNCC	2 cut(s)	145, 289
ScaI	AGTACT	3 cut(s)	16, 61, 368
SchI	GAGTC	4 cut(s)	230, 353, 569, 689
ScrFI	CCNGG	3 cut(s)	293, 300, 901
SduI	GDGCHC	2 cut(s)	201, 341
SfaNI	GCATC	4 cut(s)	148, 337, 714, 761
SfcI	CTRYAG	2 cut(s)	10, 307
SfoI	GGCGCC	1 cut(s)	538
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	4 cut(s)	514, 804, 966, 1021
SsiI	CCGC	2 cut(s)	30, 394
SspDI	GGCGCC	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	291, 298, 899
StyI	CCWWGG	2 cut(s)	255, 532
TaaI	ACNGT	7 cut(s)	115, 371, 389, 401, 438, 451, 466
TaqI	TCGA	2 cut(s)	362, 731
TasI	AATT	4 cut(s)	514, 804, 966, 1021
TatI	WGTACW	3 cut(s)	14, 59, 366
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	5 cut(s)	67, 237, 419, 591, 896
Tru1I	TTAA	2 cut(s)	512, 627
Tru9I	TTAA	2 cut(s)	512, 627
TscAI	CASTG	5 cut(s)	120, 128, 454, 475, 487
TseFI	GTSAC	3 cut(s)	102, 451, 466
TseI	GCWGC	2 cut(s)	9, 306
Tsp45I	GTSAC	3 cut(s)	102, 451, 466
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	5 cut(s)	120, 128, 454, 475, 487
Tth111I	GACNNNGTC	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	2 cut(s)	178, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
ZrmI	AGTACT	3 cut(s)	16, 61, 368
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.