MD15G1177300.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
13877192 .. 13880754
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1177300.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGGTAGCTACAAAAACGGCGTTGTCGGGGACCAAAGCGGCACCAGCAATGGCGACGCTGGTGGCGCCGCGGTGGACAAAGGCGTCGACTTCGCCAACTACTTCTGCACCTACGCCTTCCTCTACCACCAGAAGGAGATGCTCTCTGATCGAGTCCGCATGGACGCTTACTACAACGCCGTTTTCAAGAACACGCACCACTTCCATGGCAAGGCTGTGTTGGATGTGGGAGCAGGAAGTGGCATTCTCGCAATTTGGTCAGCGCAAGCCGGGGCGAGGAAGGTTTACGCCGTTGAAGCGACTTCCATGGCTGAACATGCACGTGCAGTTGTGAAAGCGAATAATCTTCAAGACGTGGTTGAGGTGATTGAGGGCTCCATGGAGGATGTTGTCCTGCCAGAGAAAGTGGATGTGATAATTTCGGAGTGGATGGGGTATTTCCTACTGCGTGAATCAATGTTTGATTCTGTGATATGCGCACGTGACCGATGGTTAAAGCCAACTGGAGTCATGTATCCTAGCCATGCTACTATGTGGGTGGCACCTATTAGGACTGGATTGGGAGATCAAAAAAGTAATGATTATGAGTCTTCTATGGACGATTGGGAACGTTTCACAGATGAGACCAAAAATTATTATGGTGTTGATATGAGTGTTTTAACAAAGCCTTTCTCTCAAGAGCAGAAGAAATACTATCTTCAGACATCATTGTGGAACAACCTTCATCCGCATCAAGTTATAGGTGCAGCTGCTTCAATAAAGGAGATTGATTGTTTAACTGCCTCAGTCAGTGACATCCTTGAAGTCAAATCAAACTTTTCGTCAACAGTAACTCTTCAGAACACAAGGCTTTGTGGCTACGGGGGATGGTTTGATGTTCAATTTCGAGGAAGAAAGGAGGATCCAGCTCAGGAAGAAGTTGAGTTGACTACCGCTCCTAGTGTGAACGATGGCACTCACTGGGGCCAACAGGTTTTTCTGTTGAGCCCTCCTGCTCGCATCACTGAAGGGGATCAACTAAATGGTTCTTTCTCAATGAAACGATCAAAGGAGAATCATAGATTGATGGAGGCTGAGTTCAGCTGTGAGATTAGACAGCAATCTGGCGAGTTAGTTCCTCGTTTCACAAATAGATATTTCATAGAGTGA

Protein Analysis

383

Amino Acids

42.84

Weight (kDa)

5.3

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTS PF05175 67 - 141 7.5e-08 Methyltransferase small domain
PrmA PF06325 69 - 141 1.4e-10 Ribosomal protein L11 methyltransferase (PrmA)
TRM5-TYW2_MTfase PF02475 69 - 144 8.6e-06 TRM5/TYW2 methyltransferase domain
Methyltransf_25 PF13649 73 - 169 1.6e-09 Methyltransferase domain
Methyltransf_11 PF08241 74 - 171 2.2e-08 Methyltransferase domain
PRMT_C PF22528 176 - 364 9e-23 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
Acc16I TGCGCA 1 cut(s) 478
AccB1I GGYRCC 3 cut(s) 41, 65, 541
AccBSI CCGCTC 1 cut(s) 935
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 71
AciI CCGC 6 cut(s) 39, 69, 71, 157, 728, 933
AclI AACGTT 1 cut(s) 610
AclWI GGATC 3 cut(s) 896, 909, 1020
AcuI CTGAAG 3 cut(s) 683, 821, 1026
AcvI CACGTG 2 cut(s) 323, 482
AcyI GRCGYC 2 cut(s) 66, 84
AfiI CCNNNNNNNGG 3 cut(s) 133, 211, 276
AgsI TTSAA 6 cut(s) 187, 296, 350, 756, 803, 881
AjiI CACGTC 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AloI GAACNNNNNNTCC 2 cut(s) 1061, 1093
AluBI AGCT 4 cut(s) 9, 749, 908, 1083
AluI AGCT 4 cut(s) 9, 749, 908, 1083
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 3 cut(s) 896, 909, 1020
AoxI GGCC 1 cut(s) 964
ApeKI GCWGC 2 cut(s) 746, 749
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AspLEI GCGC 3 cut(s) 68, 265, 479
AspS9I GGNCC 2 cut(s) 31, 964
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 3 cut(s) 41, 65, 541
BanII GRGCYC 2 cut(s) 377, 989
BbrPI CACGTG 2 cut(s) 323, 482
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 736, 758
BccI CCATC 5 cut(s) 424, 483, 861, 944, 1060
BceAI ACGGC 3 cut(s) 34, 164, 275
BciVI GTATCC 1 cut(s) 525
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 519, 939
BfoI RGCGCY 1 cut(s) 69
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 4 cut(s) 40, 69, 747, 750
BlsI GCNGC 4 cut(s) 41, 70, 748, 751
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 31, 964
BmiI GGNNCC 7 cut(s) 32, 43, 67, 376, 543, 903, 965
BmrFI CCNGG 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 3 cut(s) 129, 739, 1008
BmuI ACTGGG 1 cut(s) 970
BpiI GAAGAC 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 2 cut(s) 323, 482
BsaHI GRCGYC 2 cut(s) 66, 84
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 5 cut(s) 69, 205, 270, 306, 378
BsaXI ACNNNNNCTCC 4 cut(s) 919, 949, 1061, 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 211, 276
Bse1I ACTGG 3 cut(s) 508, 559, 965
Bse3DI GCAATG 1 cut(s) 55
BseDI CCNNGG 5 cut(s) 69, 205, 270, 306, 378
BseGI GGATG 7 cut(s) 229, 391, 415, 435, 724, 795, 872
BseLI CCNNNNNNNGG 3 cut(s) 133, 211, 276
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 798, 923, 1065
BseNI ACTGG 3 cut(s) 508, 559, 965
BseXI GCAGC 2 cut(s) 736, 758
BsgI GTGCAG 3 cut(s) 91, 345, 765
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 966
BshNI GGYRCC 3 cut(s) 41, 65, 541
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 3 cut(s) 133, 211, 276
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 243
BsnI GGCC 1 cut(s) 966
Bso31I GGTCTC 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 377, 989
Bsp143I GATC 5 cut(s) 148, 565, 901, 1012, 1043
Bsp19I CCATGG 3 cut(s) 205, 306, 378
BspACI CCGC 6 cut(s) 39, 69, 71, 157, 728, 933
BspANI GGCC 1 cut(s) 966
BspCNI CTCAG 3 cut(s) 797, 922, 1066
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 7 cut(s) 32, 43, 67, 376, 543, 903, 965
BspPI GGATC 3 cut(s) 896, 909, 1020
BspT107I GGYRCC 3 cut(s) 41, 65, 541
BspTNI GGTCTC 1 cut(s) 617
BsrBI CCGCTC 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 3 cut(s) 508, 559, 965
BssECI CCNNGG 5 cut(s) 69, 205, 270, 306, 378
BssMI GATC 5 cut(s) 148, 565, 901, 1012, 1043
BssNI GRCGYC 2 cut(s) 66, 84
BssT1I CCWWGG 3 cut(s) 205, 306, 378
Bst4CI ACNGT 1 cut(s) 829
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 2 cut(s) 66, 84
BstBAI YACGTR 2 cut(s) 323, 482
BstC8I GCNNGC 2 cut(s) 267, 997
BstDEI CTNAG 3 cut(s) 784, 909, 1074
BstDSI CCRYGG 4 cut(s) 69, 205, 306, 378
BstF5I GGATG 7 cut(s) 229, 391, 415, 435, 724, 795, 872
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 265, 479
BstKTI GATC 5 cut(s) 151, 568, 904, 1015, 1046
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 5 cut(s) 148, 565, 901, 1012, 1043
BstMWI GCNNNNNNNGC 4 cut(s) 45, 65, 296, 317
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 269
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 736, 758
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 901
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 1 cut(s) 901
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 1 cut(s) 966
BtgI CCRYGG 4 cut(s) 69, 205, 306, 378
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 7 cut(s) 229, 391, 415, 435, 724, 795, 872
BtsIMutI CAGTG 3 cut(s) 796, 958, 1002
Cac8I GCNNGC 2 cut(s) 267, 997
CfoI GCGC 3 cut(s) 68, 265, 479
Cfr13I GGNCC 2 cut(s) 31, 964
Cfr42I CCGCGG 1 cut(s) 72
CseI GACGC 3 cut(s) 65, 73, 173
CviAII CATG 7 cut(s) 160, 206, 307, 317, 379, 511, 524
DdeI CTNAG 3 cut(s) 784, 909, 1074
DinI GGCGCC 1 cut(s) 67
DpnI GATC 5 cut(s) 150, 567, 903, 1014, 1045
DpnII GATC 5 cut(s) 148, 565, 901, 1012, 1043
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco130I CCWWGG 3 cut(s) 205, 306, 378
Eco24I GRGCYC 2 cut(s) 377, 989
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 3 cut(s) 683, 821, 1026
Eco72I CACGTG 2 cut(s) 323, 482
EcoT14I CCWWGG 3 cut(s) 205, 306, 378
EcoT38I GRGCYC 2 cut(s) 377, 989
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 3 cut(s) 205, 306, 378
FaeI CATG 7 cut(s) 163, 209, 310, 320, 382, 514, 527
FaqI GGGAC 1 cut(s) 44
FatI CATG 7 cut(s) 159, 205, 306, 316, 378, 510, 523
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 40, 69, 747, 750
FokI GGATG 7 cut(s) 236, 398, 422, 442, 711, 782, 879
FriOI GRGCYC 2 cut(s) 377, 989
Fsp4HI GCNGC 4 cut(s) 40, 69, 747, 750
FspAI RTGCGCAY 1 cut(s) 478
FspBI CTAG 2 cut(s) 519, 939
FspI TGCGCA 1 cut(s) 478
GlaI GCGC 3 cut(s) 67, 264, 478
GluI GCNGC 4 cut(s) 40, 69, 747, 750
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 966
HapII CCGG 1 cut(s) 270
HgaI GACGC 3 cut(s) 65, 73, 173
HhaI GCGC 3 cut(s) 68, 265, 479
Hin1I GRCGYC 2 cut(s) 66, 84
Hin1II CATG 7 cut(s) 163, 209, 310, 320, 382, 514, 527
Hin6I GCGC 3 cut(s) 66, 263, 477
HinP1I GCGC 3 cut(s) 66, 263, 477
HincII GTYRAC 3 cut(s) 88, 825, 927
HindII GTYRAC 3 cut(s) 88, 825, 927
HinfI GANTC 6 cut(s) 153, 452, 464, 507, 587, 1054
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 6 cut(s) 76, 88, 286, 825, 927, 946
Hpy188I TCNGA 4 cut(s) 148, 424, 702, 840
Hpy188III TCNNGA 4 cut(s) 187, 350, 677, 911
Hpy8I GTNNAC 6 cut(s) 76, 88, 286, 825, 927, 946
Hpy99I CGWCG 2 cut(s) 59, 89
HpyAV CCTTC 5 cut(s) 127, 127, 274, 731, 1001
HpyCH4III ACNGT 1 cut(s) 829
HpyCH4IV ACGT 4 cut(s) 322, 354, 481, 610
HpyCH4V TGCA 4 cut(s) 108, 320, 326, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 65, 296, 317
HpyF3I CTNAG 3 cut(s) 784, 909, 1074
HpySE526I ACGT 4 cut(s) 322, 354, 481, 610
Hsp92I GRCGYC 2 cut(s) 66, 84
Hsp92II CATG 7 cut(s) 163, 209, 310, 320, 382, 514, 527
HspAI GCGC 3 cut(s) 66, 263, 477
KasI GGCGCC 1 cut(s) 65
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 5 cut(s) 148, 565, 901, 1012, 1043
LmnI GCTCC 3 cut(s) 230, 380, 940
Lsp1109I GCAGC 2 cut(s) 736, 758
LweI GCATC 3 cut(s) 129, 739, 1008
MaeI CTAG 2 cut(s) 519, 939
MaeII ACGT 4 cut(s) 322, 354, 481, 610
MaeIII GTNAC 3 cut(s) 482, 791, 829
MalI GATC 5 cut(s) 150, 567, 903, 1014, 1045
MbiI CCGCTC 1 cut(s) 935
MboI GATC 5 cut(s) 148, 565, 901, 1012, 1043
MboII GAAGA 7 cut(s) 338, 582, 689, 697, 827, 903, 926
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 2 cut(s) 377, 989
MluCI AATT 4 cut(s) 252, 417, 631, 881
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 3 cut(s) 162, 516, 596
MmeI TCCRAC 1 cut(s) 201
MseI TTAA 3 cut(s) 494, 659, 776
MslI CAYNNNNRTG 3 cut(s) 204, 321, 709
MspA1I CMGCKG 3 cut(s) 71, 749, 1083
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 243
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 45, 65, 296, 317
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 1 cut(s) 271
NcoI CCATGG 3 cut(s) 205, 306, 378
NdeII GATC 5 cut(s) 148, 565, 901, 1012, 1043
NlaIII CATG 7 cut(s) 163, 209, 310, 320, 382, 514, 527
NlaIV GGNNCC 7 cut(s) 32, 43, 67, 376, 543, 903, 965
NmuCI GTSAC 2 cut(s) 482, 791
NsbI TGCGCA 1 cut(s) 478
NspI RCATGY 1 cut(s) 320
PctI GAATGC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 452, 464, 1054
PkrI GCNGC 4 cut(s) 41, 70, 748, 751
PleI GAGTC 3 cut(s) 161, 515, 595
PluTI GGCGCC 1 cut(s) 69
PmaCI CACGTG 2 cut(s) 323, 482
PmlI CACGTG 2 cut(s) 323, 482
PpsI GAGTC 3 cut(s) 161, 515, 595
Ppu21I YACGTR 2 cut(s) 323, 482
Psp1406I AACGTT 1 cut(s) 610
PspCI CACGTG 2 cut(s) 323, 482
PspN4I GGNNCC 7 cut(s) 32, 43, 67, 376, 543, 903, 965
PspPI GGNCC 2 cut(s) 31, 964
PsuI RGATCY 1 cut(s) 901
PvuII CAGCTG 2 cut(s) 749, 1083
RseI CAYNNNNRTG 3 cut(s) 204, 321, 709
SacII CCGCGG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 86
SaqAI TTAA 3 cut(s) 494, 659, 776
SatI GCNGC 4 cut(s) 40, 69, 747, 750
Sau3AI GATC 5 cut(s) 148, 565, 901, 1012, 1043
Sau96I GGNCC 2 cut(s) 31, 964
SchI GAGTC 3 cut(s) 162, 516, 596
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 2 cut(s) 377, 989
SfaNI GCATC 3 cut(s) 129, 739, 1008
SfoI GGCGCC 1 cut(s) 67
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 3 cut(s) 204, 321, 709
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 4 cut(s) 252, 417, 631, 881
SsiI CCGC 6 cut(s) 39, 69, 71, 157, 728, 933
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 2 cut(s) 519, 939
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 3 cut(s) 205, 306, 378
TaaI ACNGT 1 cut(s) 829
TaiI ACGT 4 cut(s) 325, 357, 484, 613
TaqI TCGA 3 cut(s) 87, 151, 886
TaqII GACCGA 1 cut(s) 501
TasI AATT 4 cut(s) 252, 417, 631, 881
TauI GCSGC 2 cut(s) 42, 71
TfiI GAWTC 3 cut(s) 452, 464, 1054
Tru1I TTAA 3 cut(s) 494, 659, 776
Tru9I TTAA 3 cut(s) 494, 659, 776
TscAI CASTG 3 cut(s) 796, 965, 1009
TseFI GTSAC 2 cut(s) 482, 791
TseI GCWGC 2 cut(s) 746, 749
Tsp45I GTSAC 2 cut(s) 482, 791
TspDTI ATGAA 3 cut(s) 713, 1052, 1129
TspRI CASTG 3 cut(s) 796, 965, 1009
VpaK11BI GGWCC 1 cut(s) 31
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 519, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.