FvH4_1g03880
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
2054873 .. 2058654
3782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03880.t3

Sequence Viewer

Length: 1143 bp
ATGGGGAGCTACACAAACGGCGTCGTTTCAGACCACACCGGCGCCACCAGCAATGGCCGCGCTTCGGTGGATAAAGGCGTCGACTTTGCCAATTACTTCTGCACCTACGCCTTCCTCTACCACCAGAAGGAGATGCTCTCCGATCGTGTCCGCATGGACGCTTACTACCACGCCGTCTTCAAGAACAAGCACCACTTCAATGGCAAGGTTGTGTTGGATGTGGGAACCGGGAGTGGCATTCTCGCAATTTGGTCTGCGCAAGCTGGTGCGAGGAAGGTGTATGCGGTGGAAGCCACCAACATGGCTGAACATGCGCGCGAGCTTGTGAAAGCGAATAATGTGCAAGATGTGGTTGAGGTGATTCAGGGCTCTATGGAGGATGTTCAACTTCCAGAGAAAGTTGATGTGATAATTTCGGAGTGGATGGGGTATTTCCTACTGCGTGAGTCGATGTTTGACTCTGTGATATGTGCCCGTGACCAATGGTTGAAGCCAACTGGAGTCATGTATCCTAGTCATGCTCGGATGTGGGTGGCACCTATTAGGTCTGGCTTAGGTGATCAAAAACAAAATGATTACGAGTCATCGATGGAAGAGTGGTATCGGTTCACAGATGAAACACAATCTTATTATGGTGTTGATATGGGTGCTCTAACGAAACCATTCTCTGAAGAGCAAAAGAAATACTATCTTCAGACGTCATTGTGGAACAACCTTCATCCCAACCAAGTTATAGGGACAGCTGCAATACTAAGAGAGATTGATTGTTTAACTGCCTCTGTAAGTGACATCCTTGAAGTAAGATCAAACTTTTCATCTACAGTGACTCTTCCCAACACAAGGCTATGTGGGTTTGCAGGATGGTTTGATGTTCATTTTCGAGGACGCAAGGAGGTTCCGGCCCAGAATGAAGTTGAGTTGACCACTGCTCCTAGTGTAGATAATGGAACGCACTGGGGCCAACAGGTTTTCCTCTTGAACCCTCCAATCCGTGTGACTGAAGGGGACAATCTGAATGGTTCTTTCTCAATGAAGCGCAACAAGGAAAATCATCGTTTGATGGAGGTTGAGTTTAGCAGCGAGATTAAACAGTACTCTGGACAGCTACTCCCACCTTTCAGAAATAGATATTTCATAGAGTGA

Protein Analysis

381

Amino Acids

43.17

Weight (kDa)

5.71

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRMT5 PF05185 63 - 147 3.7e-06 PRMT5 arginine-N-methyltransferase
PrmA PF06325 67 - 140 4.5e-12 Ribosomal protein L11 methyltransferase (PrmA)
MTS PF05175 67 - 139 3.8e-07 Methyltransferase small domain
TRM5-TYW2_MTfase PF02475 67 - 140 7.1e-07 TRM5/TYW2 methyltransferase domain
Methyltransf_31 PF13847 67 - 175 2.2e-06 Methyltransferase domain
Methyltransf_25 PF13649 71 - 167 1.7e-10 Methyltransferase domain
Methyltransf_11 PF08241 72 - 169 2.9e-09 Methyltransferase domain
PRMT_C PF22528 190 - 328 2.6e-13 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 701
Acc16I TGCGCA 1 cut(s) 258
AccB1I GGYRCC 2 cut(s) 41, 535
AccI GTMKAC 1 cut(s) 81
AccII CGCG 3 cut(s) 60, 316, 318
AciI CCGC 3 cut(s) 58, 151, 284
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 3 cut(s) 677, 690, 1020
AcyI GRCGYC 4 cut(s) 21, 42, 78, 698
AfaI GTAC 1 cut(s) 1094
AfiI CCNNNNNNNGG 3 cut(s) 64, 127, 840
AgsI TTSAA 6 cut(s) 181, 199, 386, 490, 797, 979
AluBI AGCT 5 cut(s) 9, 263, 322, 743, 1105
AluI AGCT 5 cut(s) 9, 263, 322, 743, 1105
Alw21I GWGCWC 1 cut(s) 652
AoxI GGCC 3 cut(s) 55, 900, 958
ApeKI GCWGC 2 cut(s) 743, 1077
Asp700I GAANNNNTTC 1 cut(s) 662
AspLEI GCGC 6 cut(s) 44, 62, 259, 316, 318, 1038
AspS9I GGNCC 2 cut(s) 901, 958
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 370, 569
BaeGI GKGCMC 1 cut(s) 475
BanI GGYRCC 2 cut(s) 41, 535
BanII GRGCYC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 2 cut(s) 730, 1089
BccI CCATC 4 cut(s) 418, 583, 855, 1054
BceAI ACGGC 2 cut(s) 34, 158
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciVI GTATCC 1 cut(s) 519
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 229
BfaI CTAG 2 cut(s) 513, 933
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 45
BfuI GTATCC 1 cut(s) 519
BisI GCNGC 3 cut(s) 58, 744, 1078
BlsI GCNGC 3 cut(s) 59, 745, 1079
BmcAI AGTACT 1 cut(s) 1094
Bme1390I CCNGG 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 901, 958
BmiI GGNNCC 5 cut(s) 43, 226, 537, 897, 959
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 964
BmsI GCATC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 964
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 553
BpuMI CCSGG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 587
BsaHI GRCGYC 4 cut(s) 21, 42, 78, 698
BsaXI ACNNNNNCTCC 6 cut(s) 913, 943, 1055, 1085, 1092, 1122
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 127, 840
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 502, 959
Bse3DI GCAATG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 587
BseGI GGATG 7 cut(s) 223, 385, 429, 531, 718, 789, 866
BseLI CCNNNNNNNGG 3 cut(s) 64, 127, 840
BseMI GCAATG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 502, 959
BsePI GCGCGC 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 2 cut(s) 730, 1089
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 3 cut(s) 60, 316, 318
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 57, 902, 960
BshNI GGYRCC 2 cut(s) 41, 535
BshVI ATCGAT 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 652
BsiSI CCGG 3 cut(s) 39, 228, 899
BslFI GGGAC 2 cut(s) 751, 1019
BslI CCNNNNNNNGG 3 cut(s) 64, 127, 840
BsmFI GGGAC 2 cut(s) 751, 1019
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 3 cut(s) 57, 902, 960
Bsp1286I GDGCHC 3 cut(s) 371, 475, 652
Bsp143I GATC 3 cut(s) 142, 559, 803
BspACI CCGC 3 cut(s) 58, 151, 284
BspANI GGCC 3 cut(s) 57, 902, 960
BspDI ATCGAT 1 cut(s) 587
BspFNI CGCG 3 cut(s) 60, 316, 318
BspLI GGNNCC 5 cut(s) 43, 226, 537, 897, 959
BspQI GCTCTTC 1 cut(s) 666
BspT107I GGYRCC 2 cut(s) 41, 535
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 2 cut(s) 502, 959
BssAI RCCGGY 1 cut(s) 38
BssHII GCGCGC 1 cut(s) 314
BssMI GATC 3 cut(s) 142, 559, 803
BssNI GRCGYC 4 cut(s) 21, 42, 78, 698
Bst4CI ACNGT 2 cut(s) 823, 1092
Bst6I CTCTTC 3 cut(s) 588, 666, 834
BstACI GRCGYC 4 cut(s) 21, 42, 78, 698
BstC8I GCNNGC 3 cut(s) 261, 316, 320
BstDEI CTNAG 2 cut(s) 553, 752
BstF5I GGATG 7 cut(s) 223, 385, 429, 531, 718, 789, 866
BstFNI CGCG 3 cut(s) 60, 316, 318
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 6 cut(s) 44, 62, 259, 316, 318, 1038
BstKTI GATC 3 cut(s) 145, 562, 806
BstMBI GATC 3 cut(s) 142, 559, 803
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 4 cut(s) 48, 57, 290, 311
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 475
BstUI CGCG 3 cut(s) 60, 316, 318
BstV1I GCAGC 2 cut(s) 730, 1089
BstV2I GAAGAC 1 cut(s) 169
BstXI CCANNNNNNTGG 2 cut(s) 200, 301
Bsu15I ATCGAT 1 cut(s) 587
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 3 cut(s) 57, 902, 960
BsuTUI ATCGAT 1 cut(s) 587
BtsCI GGATG 7 cut(s) 223, 385, 429, 531, 718, 789, 866
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 3 cut(s) 828, 924, 952
Cac8I GCNNGC 3 cut(s) 261, 316, 320
CfoI GCGC 6 cut(s) 44, 62, 259, 316, 318, 1038
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 901, 958
ClaI ATCGAT 1 cut(s) 587
CseI GACGC 4 cut(s) 10, 67, 167, 894
Csp6I GTAC 1 cut(s) 1093
CviAII CATG 5 cut(s) 154, 301, 311, 505, 518
CviQI GTAC 1 cut(s) 1093
DdeI CTNAG 2 cut(s) 553, 752
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 144, 561, 805
DpnII GATC 3 cut(s) 142, 559, 803
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 588, 666, 834
EarI CTCTTC 3 cut(s) 588, 666, 834
Eco24I GRGCYC 1 cut(s) 371
Eco57I CTGAAG 3 cut(s) 677, 690, 1020
EcoT38I GRGCYC 1 cut(s) 371
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 5 cut(s) 157, 304, 314, 508, 521
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 751, 1019
FatI CATG 5 cut(s) 153, 300, 310, 504, 517
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 58, 744, 1078
FokI GGATG 7 cut(s) 230, 392, 436, 538, 705, 776, 873
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 58, 744, 1078
FspBI CTAG 2 cut(s) 513, 933
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 6 cut(s) 43, 61, 258, 315, 317, 1037
GluI GCNGC 3 cut(s) 58, 744, 1078
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 57, 902, 960
HapII CCGG 3 cut(s) 39, 228, 899
HgaI GACGC 4 cut(s) 10, 67, 167, 894
HhaI GCGC 6 cut(s) 44, 62, 259, 316, 318, 1038
Hin1I GRCGYC 4 cut(s) 21, 42, 78, 698
Hin1II CATG 5 cut(s) 157, 304, 314, 508, 521
Hin6I GCGC 6 cut(s) 42, 60, 257, 314, 316, 1036
HinP1I GCGC 6 cut(s) 42, 60, 257, 314, 316, 1036
HincII GTYRAC 2 cut(s) 82, 921
HindII GTYRAC 2 cut(s) 82, 921
HinfI GANTC 6 cut(s) 361, 446, 458, 501, 581, 826
HpaII CCGG 3 cut(s) 39, 228, 899
HphI GGTGA 2 cut(s) 370, 569
Hpy166II GTNNAC 3 cut(s) 82, 609, 921
Hpy188I TCNGA 8 cut(s) 31, 142, 418, 525, 670, 696, 1014, 1121
Hpy188III TCNNGA 4 cut(s) 181, 392, 976, 1098
Hpy8I GTNNAC 3 cut(s) 82, 609, 921
Hpy99I CGWCG 2 cut(s) 26, 83
HpyAV CCTTC 5 cut(s) 121, 121, 268, 725, 995
HpyCH4III ACNGT 2 cut(s) 823, 1092
HpyCH4IV ACGT 1 cut(s) 698
HpyCH4V TGCA 4 cut(s) 102, 343, 746, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 57, 290, 311
HpyF3I CTNAG 2 cut(s) 553, 752
HpySE526I ACGT 1 cut(s) 698
Hsp92I GRCGYC 4 cut(s) 21, 42, 78, 698
Hsp92II CATG 5 cut(s) 157, 304, 314, 508, 521
HspAI GCGC 6 cut(s) 42, 60, 257, 314, 316, 1036
KasI GGCGCC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 142, 559, 803
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 2 cut(s) 6, 934
Lsp1109I GCAGC 2 cut(s) 730, 1089
LweI GCATC 1 cut(s) 123
MaeI CTAG 2 cut(s) 513, 933
MaeII ACGT 1 cut(s) 698
MaeIII GTNAC 4 cut(s) 476, 785, 823, 994
MalI GATC 3 cut(s) 144, 561, 805
MboI GATC 3 cut(s) 142, 559, 803
MboII GAAGA 5 cut(s) 169, 605, 683, 683, 821
MhlI GDGCHC 3 cut(s) 371, 475, 652
MluCI AATT 3 cut(s) 91, 246, 411
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 5 cut(s) 452, 455, 510, 590, 820
MmeI TCCRAC 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 662
MseI TTAA 2 cut(s) 770, 1086
MslI CAYNNNNRTG 2 cut(s) 198, 299
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 3 cut(s) 39, 228, 899
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 237
MvnI CGCG 3 cut(s) 60, 316, 318
MwoI GCNNNNNNNGC 4 cut(s) 48, 57, 290, 311
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 229
NdeII GATC 3 cut(s) 142, 559, 803
NlaIII CATG 5 cut(s) 157, 304, 314, 508, 521
NlaIV GGNNCC 5 cut(s) 43, 226, 537, 897, 959
NmuCI GTSAC 4 cut(s) 476, 785, 823, 994
NsbI TGCGCA 1 cut(s) 258
NspI RCATGY 1 cut(s) 314
PauI GCGCGC 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 666
PctI GAATGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 3 cut(s) 59, 745, 1079
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 5 cut(s) 452, 454, 509, 589, 820
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 5 cut(s) 452, 454, 509, 589, 820
PspN4I GGNNCC 5 cut(s) 43, 226, 537, 897, 959
PspPI GGNCC 2 cut(s) 901, 958
PteI GCGCGC 1 cut(s) 314
PvuI CGATCG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 1 cut(s) 1094
RsaNI GTAC 1 cut(s) 1093
RseI CAYNNNNRTG 2 cut(s) 198, 299
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 2 cut(s) 770, 1086
SatI GCNGC 3 cut(s) 58, 744, 1078
Sau3AI GATC 3 cut(s) 142, 559, 803
Sau96I GGNCC 2 cut(s) 901, 958
ScaI AGTACT 1 cut(s) 1094
SchI GAGTC 5 cut(s) 452, 455, 510, 590, 820
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 3 cut(s) 371, 475, 652
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 819
SfoI GGCGCC 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 38
SmiMI CAYNNNNRTG 2 cut(s) 198, 299
Sse9I AATT 3 cut(s) 91, 246, 411
SsiI CCGC 3 cut(s) 58, 151, 284
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 513, 933
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 823, 1092
TaiI ACGT 1 cut(s) 701
TaqI TCGA 4 cut(s) 81, 449, 587, 880
TasI AATT 3 cut(s) 91, 246, 411
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 770, 1086
Tru9I TTAA 2 cut(s) 770, 1086
TscAI CASTG 3 cut(s) 828, 931, 959
TseFI GTSAC 4 cut(s) 476, 785, 823, 994
TseI GCWGC 2 cut(s) 743, 1077
Tsp45I GTSAC 4 cut(s) 476, 785, 823, 994
TspDTI ATGAA 7 cut(s) 630, 707, 804, 863, 924, 1046, 1123
TspGWI ACGGA 1 cut(s) 980
TspRI CASTG 3 cut(s) 828, 931, 959
XceI RCATGY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 2 cut(s) 513, 933
ZraI GACGTC 1 cut(s) 699
ZrmI AGTACT 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.