Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003382.1

Orthogroup ID

OG0009378

Physical Location & Seq

Genomic Coordinates Reverse (-)

151653 .. 156227

Gene Structure 4575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003382.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atggggagctgcacaaacggcgtcgtttcagaccaaagcggcgccaccagcaatggccgcgcgtcggttgacaaaggcgtcgactttgccaattacttctgcacctacgccttcctctgccaccagaaggagatgctctccgatcgtgttcgcatggacgcttactacaacgccgtcttccagaacaagcaccacttcgatggcaaggttgtgttggatgtgggaactgggagtggcattctcgctatttggtctgcgcaagctggtgctaggaaggtgtatgctgtggaagccactaacatggctgaacatgcgcgcgagcttgtgaaagcgaataatgtgcaagacgtggttgaggtgattcagggctctatggaggatgttcagcttccagagaaagttgatgtgataatttcggagtggatggggtatttcctactgcgtgagtcgatgtttgactctgtgatatgtgcccgtgaccgatggttgaagccaactggagtcatgtatcctagtcatgctcgtatgtgggtggcacctattaggtctgggttaggagatcaaaaacaaaatgattatgaatcatcgatggaagactggtatcgtttcacagatgaaacacaatcttattatggtgttgatatgggtgctctaacaaaacctttcgctgaagagcagaagaaatactatcttcagacatcattgtggaacaaccttcatcccaaccaagttatagggacagctgctatactaagagagattgattgtttaactgcctctgtcagtgacatcctcgaagtgagatcaaactttttatctacagtaactcttcctaacacaaggctctgtgggttcgcaggatggtttgatgttcattttcgaggacgcaaggaggttccagcccagaatgaaattgagttgaccactgctcccagtgtagataatggcacacactggggccaacaggttttcctcttgaaccctccaatccgtgtcactgaaggggataatctgaatggttctttctcaatgaagcgcaacaaggaaaatcatcgtttgatggaggttgagtttaacagcgaggtcaaacattttccccagcatataccatacctctctgtaccctataaacccaagaatgcatcgatcatcgagcactacgcgagcctccgaggagttcttggtgagcttttcgcctgcgtccttgtctctaagctctccgcttctgaatactacagcagtcgcttccctgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009791 GO:0009889 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016277 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

PrmA

Protein Analysis

418

Amino Acids

47.14

Weight (kDa)

5.77

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04870
fragaria_vesca	FvH4_1g03880 FvH4_1g03880 FvH4_1g03880 FvH4_1g03880
malus_domestica	MD02G1037100.v1.1 MD15G1177300.v1.1
prunus_persica	Prupe.7G238300_v2.0.a1
pyrus_communis	pycom02g03040 pycom15g15860
rosa_chinensis	RchiOBHm_Chr2g0089261 RchiOBHm_Chr2g0089341
rosa_laevigata	RLG00000016009
rosa_multiflora	Rmu_sc0003382.1_g000036 Rmu_sc0008322.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152080
rosa_rugosa	Rorug01G0488700
rosa_samantha	Rh2AG044900 Rh2BG043400 Rh2CG044800 Rh2DG043700
rosa_wichuraiana	Rw2G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc16I	TGCGCA	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	41, 535
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	5 cut(s)	60, 62, 316, 318, 1163
AciI	CCGC	3 cut(s)	39, 58, 1221
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	3 cut(s)	677, 690, 1020
AcyI	GRCGYC	3 cut(s)	21, 42, 78
AfaI	GTAC	1 cut(s)	1122
AfiI	CCNNNNNNNGG	2 cut(s)	64, 127
AgsI	TTSAA	2 cut(s)	490, 979
AjiI	CACGTC	1 cut(s)	349
AluBI	AGCT	7 cut(s)	9, 263, 322, 388, 743, 1189, 1216
AluI	AGCT	7 cut(s)	9, 263, 322, 388, 743, 1189, 1216
Alw21I	GWGCWC	2 cut(s)	652, 1158
Alw26I	GTCTC	1 cut(s)	1213
AoxI	GGCC	2 cut(s)	55, 958
ApeKI	GCWGC	2 cut(s)	9, 743
AspLEI	GCGC	6 cut(s)	44, 62, 259, 316, 318, 1038
AspS9I	GGNCC	1 cut(s)	958
AsuHPI	GGTGA	2 cut(s)	370, 1196
BaeGI	GKGCMC	1 cut(s)	475
BanI	GGYRCC	2 cut(s)	41, 535
BanII	GRGCYC	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	169, 600
Bbv12I	GWGCWC	2 cut(s)	652, 1158
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	6 cut(s)	194, 418, 477, 583, 855, 1054
BceAI	ACGGC	2 cut(s)	34, 158
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciVI	GTATCC	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	1213
BfaI	CTAG	2 cut(s)	270, 513
BfmI	CTRYAG	2 cut(s)	819, 1234
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	4 cut(s)	10, 40, 58, 744
BlsI	GCNGC	4 cut(s)	11, 41, 59, 745
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	958
BmiI	GGNNCC	4 cut(s)	43, 537, 897, 959
BmrI	ACTGGG	3 cut(s)	237, 927, 964
BmsI	GCATC	2 cut(s)	123, 1151
BmuI	ACTGGG	3 cut(s)	237, 927, 964
BpiI	GAAGAC	2 cut(s)	169, 600
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	519
Bsa29I	ATCGAT	2 cut(s)	587, 1145
BsaHI	GRCGYC	3 cut(s)	21, 42, 78
BsaJI	CCNNGG	1 cut(s)	1171
BsaXI	ACNNNNNCTCC	4 cut(s)	913, 943, 1055, 1085
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 127
Bse1I	ACTGG	5 cut(s)	232, 502, 602, 933, 959
Bse3DI	GCAATG	1 cut(s)	58
BseCI	ATCGAT	2 cut(s)	587, 1145
BseDI	CCNNGG	1 cut(s)	1171
BseGI	GGATG	6 cut(s)	223, 385, 429, 718, 789, 866
BseLI	CCNNNNNNNGG	2 cut(s)	64, 127
BseMI	GCAATG	1 cut(s)	58
BseNI	ACTGG	5 cut(s)	232, 502, 602, 933, 959
BsePI	GCGCGC	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	1188
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	730
BseYI	CCCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	85
Bsh1236I	CGCG	5 cut(s)	60, 62, 316, 318, 1163
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	57, 960
BshNI	GGYRCC	2 cut(s)	41, 535
BshVI	ATCGAT	2 cut(s)	587, 1145
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	652, 1158
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	2 cut(s)	64, 127
BsmAI	GTCTC	1 cut(s)	1213
BsmFI	GGGAC	1 cut(s)	751
BsmI	GAATGC	2 cut(s)	237, 1144
BsnI	GGCC	2 cut(s)	57, 960
Bsp1286I	GDGCHC	4 cut(s)	371, 475, 652, 1158
Bsp143I	GATC	4 cut(s)	142, 559, 803, 1146
BspACI	CCGC	3 cut(s)	39, 58, 1221
BspANI	GGCC	2 cut(s)	57, 960
BspDI	ATCGAT	2 cut(s)	587, 1145
BspFNI	CGCG	5 cut(s)	60, 62, 316, 318, 1163
BspLI	GGNNCC	4 cut(s)	43, 537, 897, 959
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	2 cut(s)	41, 535
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	232, 502, 602, 933, 959
BssECI	CCNNGG	1 cut(s)	1171
BssHII	GCGCGC	1 cut(s)	314
BssMI	GATC	4 cut(s)	142, 559, 803, 1146
BssNI	GRCGYC	3 cut(s)	21, 42, 78
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	2 cut(s)	666, 834
BstACI	GRCGYC	3 cut(s)	21, 42, 78
BstC8I	GCNNGC	5 cut(s)	261, 316, 320, 1165, 1198
BstDEI	CTNAG	2 cut(s)	752, 1212
BstF5I	GGATG	6 cut(s)	223, 385, 429, 718, 789, 866
BstFNI	CGCG	5 cut(s)	60, 62, 316, 318, 1163
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	6 cut(s)	44, 62, 259, 316, 318, 1038
BstKTI	GATC	4 cut(s)	145, 562, 806, 1149
BstMAI	GTCTC	1 cut(s)	1213
BstMBI	GATC	4 cut(s)	142, 559, 803, 1146
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 48, 57, 290, 311
BstNSI	RCATGY	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	819, 1234
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	5 cut(s)	60, 62, 316, 318, 1163
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	2 cut(s)	169, 600
BstXI	CCANNNNNNTGG	2 cut(s)	200, 301
Bsu15I	ATCGAT	2 cut(s)	587, 1145
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	57, 960
BsuTUI	ATCGAT	2 cut(s)	587, 1145
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	6 cut(s)	223, 385, 429, 718, 789, 866
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	5 cut(s)	790, 924, 940, 952, 996
Cac8I	GCNNGC	5 cut(s)	261, 316, 320, 1165, 1198
CfoI	GCGC	6 cut(s)	44, 62, 259, 316, 318, 1038
Cfr13I	GGNCC	1 cut(s)	958
ClaI	ATCGAT	2 cut(s)	587, 1145
CseI	GACGC	6 cut(s)	10, 51, 67, 167, 894, 1189
Csp6I	GTAC	1 cut(s)	1121
CviAII	CATG	5 cut(s)	154, 301, 311, 505, 518
CviQI	GTAC	1 cut(s)	1121
DdeI	CTNAG	2 cut(s)	752, 1212
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	4 cut(s)	144, 561, 805, 1148
DpnII	GATC	4 cut(s)	142, 559, 803, 1146
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	666, 834
EarI	CTCTTC	2 cut(s)	666, 834
Eco24I	GRGCYC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	677, 690, 1020
EcoT22I	ATGCAT	1 cut(s)	1144
EcoT38I	GRGCYC	1 cut(s)	371
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	5 cut(s)	157, 304, 314, 508, 521
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	5 cut(s)	153, 300, 310, 504, 517
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	10, 40, 58, 744
FokI	GGATG	6 cut(s)	230, 392, 436, 705, 776, 873
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	10, 40, 58, 744
FspBI	CTAG	2 cut(s)	270, 513
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	6 cut(s)	43, 61, 258, 315, 317, 1037
GluI	GCNGC	4 cut(s)	10, 40, 58, 744
GsaI	CCCAGC	1 cut(s)	1102
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	57, 960
HgaI	GACGC	6 cut(s)	10, 51, 67, 167, 894, 1189
HhaI	GCGC	6 cut(s)	44, 62, 259, 316, 318, 1038
Hin1I	GRCGYC	3 cut(s)	21, 42, 78
Hin1II	CATG	5 cut(s)	157, 304, 314, 508, 521
Hin6I	GCGC	6 cut(s)	42, 60, 257, 314, 316, 1036
HinP1I	GCGC	6 cut(s)	42, 60, 257, 314, 316, 1036
HincII	GTYRAC	3 cut(s)	70, 82, 921
HindII	GTYRAC	3 cut(s)	70, 82, 921
HinfI	GANTC	5 cut(s)	361, 446, 458, 501, 581
HphI	GGTGA	2 cut(s)	370, 1196
Hpy166II	GTNNAC	3 cut(s)	70, 82, 921
Hpy188I	TCNGA	7 cut(s)	31, 142, 418, 696, 1014, 1172, 1228
Hpy188III	TCNNGA	3 cut(s)	181, 392, 976
Hpy8I	GTNNAC	3 cut(s)	70, 82, 921
Hpy99I	CGWCG	3 cut(s)	26, 67, 83
HpyAV	CCTTC	5 cut(s)	121, 121, 268, 725, 995
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	12, 102, 343, 1142
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 48, 57, 290, 311
HpyF3I	CTNAG	2 cut(s)	752, 1212
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	3 cut(s)	21, 42, 78
Hsp92II	CATG	5 cut(s)	157, 304, 314, 508, 521
HspAI	GCGC	6 cut(s)	42, 60, 257, 314, 316, 1036
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	142, 559, 803, 1146
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	6, 934
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	2 cut(s)	123, 1151
MaeI	CTAG	2 cut(s)	270, 513
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	4 cut(s)	476, 785, 823, 994
MalI	GATC	4 cut(s)	144, 561, 805, 1148
MboI	GATC	4 cut(s)	142, 559, 803, 1146
MboII	GAAGA	6 cut(s)	169, 605, 683, 683, 691, 821
MhlI	GDGCHC	4 cut(s)	371, 475, 652, 1158
MluCI	AATT	3 cut(s)	91, 411, 912
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	452, 455, 510
MmeI	TCCRAC	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	1144
MseI	TTAA	2 cut(s)	770, 1074
MslI	CAYNNNNRTG	3 cut(s)	198, 299, 703
MspA1I	CMGCKG	1 cut(s)	743
Mva1269I	GAATGC	2 cut(s)	237, 1144
MvnI	CGCG	5 cut(s)	60, 62, 316, 318, 1163
MwoI	GCNNNNNNNGC	5 cut(s)	18, 48, 57, 290, 311
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	4 cut(s)	142, 559, 803, 1146
NlaIII	CATG	5 cut(s)	157, 304, 314, 508, 521
NlaIV	GGNNCC	4 cut(s)	43, 537, 897, 959
NmuCI	GTSAC	3 cut(s)	476, 785, 994
NsbI	TGCGCA	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	1 cut(s)	314
PauI	GCGCGC	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	2 cut(s)	237, 1144
PfeI	GAWTC	2 cut(s)	361, 581
PkrI	GCNGC	4 cut(s)	11, 41, 59, 745
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	452, 454, 509
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	3 cut(s)	452, 454, 509
PspFI	CCCAGC	1 cut(s)	1098
PspN4I	GGNNCC	4 cut(s)	43, 537, 897, 959
PspPI	GGNCC	1 cut(s)	958
PteI	GCGCGC	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	1122
RsaNI	GTAC	1 cut(s)	1121
RseI	CAYNNNNRTG	3 cut(s)	198, 299, 703
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	770, 1074
SatI	GCNGC	4 cut(s)	10, 40, 58, 744
Sau3AI	GATC	4 cut(s)	142, 559, 803, 1146
Sau96I	GGNCC	1 cut(s)	958
SchI	GAGTC	3 cut(s)	452, 455, 510
SduI	GDGCHC	4 cut(s)	371, 475, 652, 1158
SfaNI	GCATC	2 cut(s)	123, 1151
SfcI	CTRYAG	2 cut(s)	819, 1234
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	3 cut(s)	198, 299, 703
Sse9I	AATT	3 cut(s)	91, 411, 912
SsiI	CCGC	3 cut(s)	39, 58, 1221
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	270, 513
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	8 cut(s)	81, 198, 449, 587, 795, 880, 1145, 1152
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	91, 411, 912
TauI	GCSGC	2 cut(s)	42, 60
TfiI	GAWTC	2 cut(s)	361, 581
Tru1I	TTAA	2 cut(s)	770, 1074
Tru9I	TTAA	2 cut(s)	770, 1074
TscAI	CASTG	5 cut(s)	790, 931, 940, 959, 1003
TseFI	GTSAC	3 cut(s)	476, 785, 994
TseI	GCWGC	2 cut(s)	9, 743
Tsp45I	GTSAC	3 cut(s)	476, 785, 994
TspDTI	ATGAA	6 cut(s)	594, 630, 707, 863, 924, 1046
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	5 cut(s)	790, 931, 940, 959, 1003
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	270, 513
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.