Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009378

Physical Location & Seq

Genomic Coordinates Forward (+)

3527690 .. 3528342

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCAGGATTCCTGAACATTTGTATGCTTACTATAACATGTAACTTATGTTCTGGTGAGGTTCCAGCCCAGAATGAAATTGACTTGACCACTACTCCCAGTGTAGATAATGGCACACACTGGGGAAAACAGATTTTCCTCTTGAACCCTCCAATCCGTGTCACTGAAGGGGATAATCTGAATGGTTCTTTCTCAATGAGGTGCAACAAGGAAAATCATCGTTTGATGGAGGTTGAGTTTAGCAGTGAGATTAAACAGTATTCTGGACAGCTACTCCCACCTTTTAGAAATATATATTTCATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009791 GO:0009889 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016277 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

PrmA

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

5.05

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT_C	PF22528	24 - 84	1.2e-06	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04870
fragaria_vesca	FvH4_1g03880 FvH4_1g03880 FvH4_1g03880 FvH4_1g03880
malus_domestica	MD02G1037100.v1.1 MD15G1177300.v1.1
prunus_persica	Prupe.7G238300_v2.0.a1
pyrus_communis	pycom02g03040 pycom15g15860
rosa_chinensis	RchiOBHm_Chr2g0089261 RchiOBHm_Chr2g0089341
rosa_laevigata	RLG00000016009
rosa_multiflora	Rmu_sc0003382.1_g000036 Rmu_sc0008322.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152080
rosa_rugosa	Rorug01G0488700
rosa_samantha	Rh2AG044900 Rh2BG043400 Rh2CG044800 Rh2DG043700
rosa_wichuraiana	Rw2G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	68
BccI	CCATC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	6
BmrI	ACTGGG	2 cut(s)	93, 130
BmuI	ACTGGG	2 cut(s)	93, 130
BsaXI	ACNNNNNCTCC	6 cut(s)	79, 109, 221, 251, 258, 288
Bse1I	ACTGG	2 cut(s)	99, 125
BseBI	CCWGG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	99, 125
BspLI	GGNNCC	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	99, 125
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	4
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	4 cut(s)	106, 118, 162, 250
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	2 cut(s)	68, 271
CviKI_1	RGCY	2 cut(s)	68, 271
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	1 cut(s)	42
FaiI	YATR	7 cut(s)	26, 35, 40, 49, 293, 295, 302
FatI	CATG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	42
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	13, 142, 264
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	42
LpnPI	CCDG	8 cut(s)	18, 26, 39, 78, 83, 106, 112, 249
MaeIII	GTNAC	2 cut(s)	41, 160
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	5 cut(s)	52, 149, 159, 192, 223
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	42
PciI	ACATGT	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	9
PscI	ACATGT	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	63
PsrI	GAACNNNNNNTAC	2 cut(s)	34, 66
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	5 cut(s)	63, 203, 234, 273, 283
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	258
TasI	AATT	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	4 cut(s)	106, 125, 169, 250
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	90, 289
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	4 cut(s)	106, 125, 169, 250
XceI	RCATGY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.