Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009378

Physical Location & Seq

Genomic Coordinates Reverse (-)

89183174 .. 89186984

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGGAGCTGCACAAACGGCGTCGTTTCAGACCAAAGCGGCGCTACCAGCAATGGCCGCGCGTCGGTGGACAAAGGCGTCGACTTTGCCAATTACTTCTGCACCTACGCCTTCCTCTACCACCAGAAGGAGATGCTCTCCGATCGTGTTCGCATGGACGCTTACTACAACGCCGTCTTCCAGAACAAGCACCACTTCAATGGCAAGGTTGTGTTGGATGTGGGAACTGGGAGTGGCATTCTCGCAATTTGGTCTGCGCAAGCTGGTGCTAGGAAGGTGTATGCTGTGGAAGCCACTAACATGGCTGAACATGCACGCGAGCTTGTGAAAGCGAATAATGTGCAAGAAGTGGTTGAGGTGATTCAGGGCTCTATGGAGGATGTTCAGCTTCCAGAGAAAGTTGATGTGATAATTTCGGAGTGGATGGGGTATTTCCTACTGCGTGAGTCGATGTTTGACTCTGTGATATGTGCCCGTGACCGATGGTTGAAGCCAACTGGAGTCATGTATCCTAGTCACGCTCGTATGTGGGTGGCACCTATTAGGTCTGGGTTAGGAGATCAAAAACAAAATGATTATGAATCATCGATGGAAGACTGGTATCGTTTCACAGATGAAACACAATCTTATTATGGTGTTGATATGGGTGCTCTAACAAAACCTTTCGCTGAAGAGCAGAAGAAATATTATCTTCAGACATCATTGTGGAACAACCTTCATCCCAACCAAGTTATAGGGACAGCTGCTATACTAAGAGAGATTGATTGTTTAACTGCCTCTGTCAGTGACATCCTCGAAGTGAGATCAAACTTTTTATCTACAGTAACTCTTCCGAACACAAGGCTCTGTGGGTTCGCAGGATGGTTTGATGTTCATTTTCGAGGACGCAAGGAGGTTCCAGCCCAGAATGAAATTGAGTTGAACACTGCTCCCAGTGTAGATAATGGCACACACTGGGGCCAACAGGTTTTCCTCTTGAACCCTCCAATCCGTGTCACTGAAGGGGATAATCTGAATGGTTCTTTCTCAATGAAGCGCAACAAGGAAAATCATCGTTTGATGGAGGTTGAGTTTAACAGTGAGGTCAAACAGTATTCAGGACAGCTACTCCCACCTTTCAGAAATAGATATTTCATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009791 GO:0009889 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016277 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

PrmA

Protein Analysis

380

Amino Acids

43.15

Weight (kDa)

5.57

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT5	PF05185	62 - 147	4.6e-06	PRMT5 arginine-N-methyltransferase
PrmA	PF06325	67 - 140	5.2e-12	Ribosomal protein L11 methyltransferase (PrmA)
MTS	PF05175	67 - 139	4.3e-07	Methyltransferase small domain
Methyltransf_31	PF13847	67 - 175	7.5e-07	Methyltransferase domain
TRM5-TYW2_MTfase	PF02475	67 - 142	1.5e-06	TRM5/TYW2 methyltransferase domain
Methyltransf_25	PF13649	71 - 167	5.8e-11	Methyltransferase domain
Methyltransf_11	PF08241	72 - 169	4.9e-10	Methyltransferase domain
PRMT_C	PF22528	190 - 362	8.3e-21	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04870
fragaria_vesca	FvH4_1g03880 FvH4_1g03880 FvH4_1g03880 FvH4_1g03880
malus_domestica	MD02G1037100.v1.1 MD15G1177300.v1.1
prunus_persica	Prupe.7G238300_v2.0.a1
pyrus_communis	pycom02g03040 pycom15g15860
rosa_chinensis	RchiOBHm_Chr2g0089261 RchiOBHm_Chr2g0089341
rosa_laevigata	RLG00000016009
rosa_multiflora	Rmu_sc0003382.1_g000036 Rmu_sc0008322.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152080
rosa_rugosa	Rorug01G0488700
rosa_samantha	Rh2AG044900 Rh2BG043400 Rh2CG044800 Rh2DG043700
rosa_wichuraiana	Rw2G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc16I	TGCGCA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	60, 62, 318
AciI	CCGC	2 cut(s)	39, 58
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	3 cut(s)	677, 690, 1020
AcyI	GRCGYC	2 cut(s)	21, 78
AfiI	CCNNNNNNNGG	2 cut(s)	64, 127
AgsI	TTSAA	4 cut(s)	199, 490, 922, 979
AluBI	AGCT	6 cut(s)	9, 263, 322, 388, 743, 1105
AluI	AGCT	6 cut(s)	9, 263, 322, 388, 743, 1105
Alw21I	GWGCWC	1 cut(s)	652
AoxI	GGCC	2 cut(s)	55, 958
ApeKI	GCWGC	2 cut(s)	9, 743
AspLEI	GCGC	4 cut(s)	44, 62, 259, 1038
AspS9I	GGNCC	1 cut(s)	958
AsuHPI	GGTGA	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	169, 600
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	5 cut(s)	418, 477, 583, 855, 1054
BceAI	ACGGC	2 cut(s)	34, 158
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciVI	GTATCC	1 cut(s)	519
BfaI	CTAG	2 cut(s)	270, 513
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	4 cut(s)	10, 40, 58, 744
BlsI	GCNGC	4 cut(s)	11, 41, 59, 745
BmgT120I	GGNCC	1 cut(s)	958
BmiI	GGNNCC	3 cut(s)	537, 897, 959
BmrI	ACTGGG	3 cut(s)	237, 927, 964
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	3 cut(s)	237, 927, 964
BpiI	GAAGAC	2 cut(s)	169, 600
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	587
BsaHI	GRCGYC	2 cut(s)	21, 78
BsaXI	ACNNNNNCTCC	4 cut(s)	1055, 1085, 1092, 1122
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 127
Bse1I	ACTGG	5 cut(s)	232, 502, 602, 933, 959
Bse3DI	GCAATG	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	587
BseGI	GGATG	6 cut(s)	223, 385, 429, 718, 789, 866
BseLI	CCNNNNNNNGG	2 cut(s)	64, 127
BseMI	GCAATG	1 cut(s)	58
BseNI	ACTGG	5 cut(s)	232, 502, 602, 933, 959
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	730
BsgI	GTGCAG	1 cut(s)	85
Bsh1236I	CGCG	3 cut(s)	60, 62, 318
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	57, 960
BshNI	GGYRCC	1 cut(s)	535
BshVI	ATCGAT	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	2 cut(s)	64, 127
BsmFI	GGGAC	1 cut(s)	751
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	57, 960
Bsp1286I	GDGCHC	3 cut(s)	371, 475, 652
Bsp143I	GATC	3 cut(s)	142, 559, 803
BspACI	CCGC	2 cut(s)	39, 58
BspANI	GGCC	2 cut(s)	57, 960
BspDI	ATCGAT	1 cut(s)	587
BspFNI	CGCG	3 cut(s)	60, 62, 318
BspLI	GGNNCC	3 cut(s)	537, 897, 959
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	232, 502, 602, 933, 959
BssMI	GATC	3 cut(s)	142, 559, 803
BssNI	GRCGYC	2 cut(s)	21, 78
Bst4CI	ACNGT	3 cut(s)	823, 1079, 1092
Bst6I	CTCTTC	2 cut(s)	666, 834
BstACI	GRCGYC	2 cut(s)	21, 78
BstC8I	GCNNGC	3 cut(s)	261, 316, 320
BstDEI	CTNAG	1 cut(s)	752
BstF5I	GGATG	6 cut(s)	223, 385, 429, 718, 789, 866
BstFNI	CGCG	3 cut(s)	60, 62, 318
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	4 cut(s)	44, 62, 259, 1038
BstKTI	GATC	3 cut(s)	145, 562, 806
BstMBI	GATC	3 cut(s)	142, 559, 803
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 48, 57, 290, 311
BstNSI	RCATGY	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	3 cut(s)	60, 62, 318
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	2 cut(s)	169, 600
BstXI	CCANNNNNNTGG	2 cut(s)	200, 301
Bsu15I	ATCGAT	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	57, 960
BsuTUI	ATCGAT	1 cut(s)	587
BtsCI	GGATG	6 cut(s)	223, 385, 429, 718, 789, 866
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	6 cut(s)	790, 924, 940, 952, 996, 1084
Cac8I	GCNNGC	3 cut(s)	261, 316, 320
CfoI	GCGC	4 cut(s)	44, 62, 259, 1038
Cfr13I	GGNCC	1 cut(s)	958
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	5 cut(s)	10, 51, 67, 167, 894
CviAII	CATG	4 cut(s)	154, 301, 311, 505
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	3 cut(s)	144, 561, 805
DpnII	GATC	3 cut(s)	142, 559, 803
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	666, 834
EarI	CTCTTC	2 cut(s)	666, 834
Eco24I	GRGCYC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	677, 690, 1020
EcoT38I	GRGCYC	1 cut(s)	371
FaeI	CATG	4 cut(s)	157, 304, 314, 508
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	4 cut(s)	153, 300, 310, 504
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	10, 40, 58, 744
FokI	GGATG	6 cut(s)	230, 392, 436, 705, 776, 873
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	10, 40, 58, 744
FspBI	CTAG	2 cut(s)	270, 513
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	4 cut(s)	43, 61, 258, 1037
GluI	GCNGC	4 cut(s)	10, 40, 58, 744
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	57, 960
HgaI	GACGC	5 cut(s)	10, 51, 67, 167, 894
HhaI	GCGC	4 cut(s)	44, 62, 259, 1038
Hin1I	GRCGYC	2 cut(s)	21, 78
Hin1II	CATG	4 cut(s)	157, 304, 314, 508
Hin6I	GCGC	4 cut(s)	42, 60, 257, 1036
HinP1I	GCGC	4 cut(s)	42, 60, 257, 1036
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	5 cut(s)	361, 446, 458, 501, 581
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	70, 82
Hpy188I	TCNGA	7 cut(s)	31, 142, 418, 696, 834, 1014, 1121
Hpy188III	TCNNGA	4 cut(s)	181, 392, 976, 1098
Hpy8I	GTNNAC	2 cut(s)	70, 82
Hpy99I	CGWCG	3 cut(s)	26, 67, 83
HpyAV	CCTTC	5 cut(s)	121, 121, 268, 725, 995
HpyCH4III	ACNGT	3 cut(s)	823, 1079, 1092
HpyCH4V	TGCA	4 cut(s)	12, 102, 314, 343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 48, 57, 290, 311
HpyF3I	CTNAG	1 cut(s)	752
Hsp92I	GRCGYC	2 cut(s)	21, 78
Hsp92II	CATG	4 cut(s)	157, 304, 314, 508
HspAI	GCGC	4 cut(s)	42, 60, 257, 1036
Kzo9I	GATC	3 cut(s)	142, 559, 803
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	6, 934
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	270, 513
MaeIII	GTNAC	5 cut(s)	476, 515, 785, 823, 994
MalI	GATC	3 cut(s)	144, 561, 805
MboI	GATC	3 cut(s)	142, 559, 803
MboII	GAAGA	6 cut(s)	169, 605, 683, 683, 691, 821
MhlI	GDGCHC	3 cut(s)	371, 475, 652
MluCI	AATT	4 cut(s)	91, 246, 411, 912
MlyI	GAGTC	3 cut(s)	452, 455, 510
MmeI	TCCRAC	1 cut(s)	195
MseI	TTAA	2 cut(s)	770, 1074
MslI	CAYNNNNRTG	3 cut(s)	198, 299, 703
MspA1I	CMGCKG	1 cut(s)	743
Mva1269I	GAATGC	1 cut(s)	237
MvnI	CGCG	3 cut(s)	60, 62, 318
MwoI	GCNNNNNNNGC	5 cut(s)	18, 48, 57, 290, 311
NdeII	GATC	3 cut(s)	142, 559, 803
NlaIII	CATG	4 cut(s)	157, 304, 314, 508
NlaIV	GGNNCC	3 cut(s)	537, 897, 959
NmuCI	GTSAC	4 cut(s)	476, 515, 785, 994
NsbI	TGCGCA	1 cut(s)	258
NspI	RCATGY	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	361, 581
PkrI	GCNGC	4 cut(s)	11, 41, 59, 745
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	3 cut(s)	452, 454, 509
PpsI	GAGTC	3 cut(s)	452, 454, 509
PspN4I	GGNNCC	3 cut(s)	537, 897, 959
PspPI	GGNCC	1 cut(s)	958
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	743
RseI	CAYNNNNRTG	3 cut(s)	198, 299, 703
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	770, 1074
SatI	GCNGC	4 cut(s)	10, 40, 58, 744
Sau3AI	GATC	3 cut(s)	142, 559, 803
Sau96I	GGNCC	1 cut(s)	958
SchI	GAGTC	3 cut(s)	452, 455, 510
SduI	GDGCHC	3 cut(s)	371, 475, 652
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	819
SmiMI	CAYNNNNRTG	3 cut(s)	198, 299, 703
Sse9I	AATT	4 cut(s)	91, 246, 411, 912
SsiI	CCGC	2 cut(s)	39, 58
SspI	AATATT	1 cut(s)	686
SspMI	CTAG	2 cut(s)	270, 513
TaaI	ACNGT	3 cut(s)	823, 1079, 1092
TaqI	TCGA	5 cut(s)	81, 449, 587, 795, 880
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	4 cut(s)	91, 246, 411, 912
TauI	GCSGC	2 cut(s)	42, 60
TfiI	GAWTC	2 cut(s)	361, 581
Tru1I	TTAA	2 cut(s)	770, 1074
Tru9I	TTAA	2 cut(s)	770, 1074
TscAI	CASTG	6 cut(s)	790, 931, 940, 959, 1003, 1084
TseFI	GTSAC	4 cut(s)	476, 515, 785, 994
TseI	GCWGC	2 cut(s)	9, 743
Tsp45I	GTSAC	4 cut(s)	476, 515, 785, 994
TspDTI	ATGAA	7 cut(s)	594, 630, 707, 863, 924, 1046, 1123
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	6 cut(s)	790, 931, 940, 959, 1003, 1084
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	270, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.