Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009378

Physical Location & Seq

Genomic Coordinates Reverse (-)

1373234 .. 1375821

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTGATCATGCTCGTGCCCTTGTCAAAGCCAATAACCTTGACCATATTGTAGAAGTCATTGAAGGATCTGTCGAGGATATTTCATTGCCTGAGAAAGTTGATGTAATTATCTCGGAGTGGATGGGATACTTCCTTCTGCGGGAGTCCATGTTTGATTCTGTGATTAGTGCTCGTGACCGATGGTTAAAGCCAACAGGTGTCATGTACCCTAGTCATGCTCGCATGTGGCTTGCACCCATCAAGTCCAATATAGCAGATCGGAAGAGGAATGATTTCGATGGGGCAATGGCAGACTGGCATAACTTTTCGGATGAGATCAAAAGTTACTATGGGGTTGATATGGGAGTTTTAACAAAACCTTTTGCTGAAGAGCAAGAAAAGTATTACATACAGACTGCTATGTGGAATGACTTGAATCCACAACAAATCATAGGCACTCCCACAATTGTCAAGGAGATGGATTGTTTGACAGCATCTGTCAGTGAAATCGAGGAAGTCAGATCAAATGTAACGTCAGTTATCAATATGGAGCATACAAGGCTATGTGGTTTTGGTGGATGGTTCGATGTTCAGTTCTCGGGGAGAAAAGAAGACCCCGCACAGCAAGAAATCGAGTTGACCACAGCTCCAAGTGAGCAGCACTGCACGCACTGGGGACAACAGGTTTTCATTATGTCGAATCCTATAAATGTTGAGGAAGGTGATAATCTGAATCTTGGTTTGTTAATGAGCCGGTCCAAGGAAAATCACCGACTAATGGAGATTGAGCTTAACTGTGAAATAAAAGAAGCATCTGGTAACCCCAAAGAATCTTTCAAGAAGACTTACTTCATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009791 GO:0009889 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016277 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034969 GO:0035241 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

PrmA

Protein Analysis

280

Amino Acids

32.07

Weight (kDa)

4.86

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTS	PF05175	66 - 142	1.1e-06	Methyltransferase small domain
PrmA	PF06325	70 - 143	2.8e-11	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25	PF13649	74 - 170	1.4e-10	Methyltransferase domain
Methyltransf_11	PF08241	75 - 172	2.1e-09	Methyltransferase domain
PRMT_C	PF22528	194 - 366	5.1e-20	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04870
fragaria_vesca	FvH4_1g03880 FvH4_1g03880 FvH4_1g03880 FvH4_1g03880
malus_domestica	MD02G1037100.v1.1 MD15G1177300.v1.1
prunus_persica	Prupe.7G238300_v2.0.a1
pyrus_communis	pycom02g03040 pycom15g15860
rosa_chinensis	RchiOBHm_Chr2g0089261 RchiOBHm_Chr2g0089341
rosa_laevigata	RLG00000016009
rosa_multiflora	Rmu_sc0003382.1_g000036 Rmu_sc0008322.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152080
rosa_rugosa	Rorug01G0488700
rosa_samantha	Rh2AG044900 Rh2BG043400 Rh2CG044800 Rh2DG043700
rosa_wichuraiana	Rw2G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	142, 600
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	142, 742, 760
AgsI	TTSAA	3 cut(s)	65, 418, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	2 cut(s)	629, 772
AluI	AGCT	2 cut(s)	629, 772
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	640
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	738
AsuHPI	GGTGA	2 cut(s)	716, 743
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	22
BauI	CACGAG	2 cut(s)	15, 174
BbsI	GAAGAC	2 cut(s)	600, 830
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	6 cut(s)	118, 177, 248, 275, 454, 555
BciVI	GTATCC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	641
BlsI	GCNGC	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	738
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	738
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	485, 803
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	2 cut(s)	600, 830
BsaJI	CCNNGG	1 cut(s)	741
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 742, 760
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	2 cut(s)	302, 659
Bse3DI	GCAATG	2 cut(s)	86, 294
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	129, 319, 566
BseLI	CCNNNNNNNGG	3 cut(s)	142, 742, 760
BseMI	GCAATG	2 cut(s)	86, 294
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	302, 659
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	672
BslI	CCNNNNNNNGG	3 cut(s)	142, 742, 760
BsmFI	GGGAC	1 cut(s)	672
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	22, 175
Bsp143I	GATC	5 cut(s)	7, 68, 259, 318, 503
BspACI	CCGC	2 cut(s)	142, 600
BspCNI	CTCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	86, 294
BsrFI	RCCGGY	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	302, 659
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	5 cut(s)	7, 68, 259, 318, 503
BssSI	CACGAG	2 cut(s)	15, 174
BssT1I	CCWWGG	1 cut(s)	741
Bst2BI	CACGAG	2 cut(s)	15, 174
Bst4CI	ACNGT	1 cut(s)	779
Bst6I	CTCTTC	2 cut(s)	260, 366
BstC8I	GCNNGC	3 cut(s)	223, 234, 650
BstDEI	CTNAG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	800
BstF5I	GGATG	3 cut(s)	129, 319, 566
BstKTI	GATC	5 cut(s)	10, 71, 262, 321, 506
BstMBI	GATC	5 cut(s)	7, 68, 259, 318, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 541, 649
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	800
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	2 cut(s)	600, 830
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	129, 319, 566
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	490, 643, 652
Cac8I	GCNNGC	3 cut(s)	223, 234, 650
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	738
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	5 cut(s)	11, 151, 205, 218, 226
CviJI	RGCY	8 cut(s)	5, 32, 193, 232, 544, 629, 735, 772
CviKI_1	RGCY	8 cut(s)	5, 32, 193, 232, 544, 629, 735, 772
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	5 cut(s)	9, 70, 261, 320, 505
DpnII	GATC	5 cut(s)	7, 68, 259, 318, 503
Eam1104I	CTCTTC	2 cut(s)	260, 366
EarI	CTCTTC	2 cut(s)	260, 366
Eco130I	CCWWGG	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	738
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	580
Eco91I	GGTNACC	1 cut(s)	800
EcoO65I	GGTNACC	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	5 cut(s)	14, 154, 208, 221, 229
FalI	AAGNNNNNCTT	1 cut(s)	815
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	5 cut(s)	10, 150, 204, 217, 225
FauI	CCCGC	2 cut(s)	135, 607
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	641
FokI	GGATG	3 cut(s)	136, 326, 573
Fsp4HI	GCNGC	1 cut(s)	641
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	641
HapII	CCGG	1 cut(s)	736
Hin1II	CATG	5 cut(s)	14, 154, 208, 221, 229
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	6 cut(s)	146, 158, 418, 682, 715, 812
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	2 cut(s)	716, 743
Hpy166II	GTNNAC	1 cut(s)	621
Hpy188I	TCNGA	5 cut(s)	118, 264, 313, 503, 714
Hpy188III	TCNNGA	2 cut(s)	176, 820
Hpy8I	GTNNAC	1 cut(s)	621
HpyAV	CCTTC	3 cut(s)	59, 146, 695
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	2 cut(s)	236, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 541, 649
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	5 cut(s)	14, 154, 208, 221, 229
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 68, 259, 318, 503
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	532, 634
LpnPI	CCDG	7 cut(s)	105, 183, 283, 640, 650, 749, 783
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	2 cut(s)	485, 803
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	4 cut(s)	176, 326, 511, 800
MalI	GATC	5 cut(s)	9, 70, 261, 320, 505
MboI	GATC	5 cut(s)	7, 68, 259, 318, 503
MboII	GAAGA	4 cut(s)	277, 383, 605, 835
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	22, 175
MluCI	AATT	2 cut(s)	108, 447
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	4 cut(s)	70, 261, 487, 691
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	4 cut(s)	188, 353, 728, 774
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	736
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	11, 541, 649
NdeII	GATC	5 cut(s)	7, 68, 259, 318, 503
NlaIII	CATG	5 cut(s)	14, 154, 208, 221, 229
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	5 cut(s)	158, 418, 682, 715, 812
PkrI	GCNGC	1 cut(s)	642
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspEI	GGTNACC	1 cut(s)	800
PspPI	GGNCC	1 cut(s)	738
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	188, 353, 728, 774
SatI	GCNGC	1 cut(s)	641
Sau3AI	GATC	5 cut(s)	7, 68, 259, 318, 503
Sau96I	GGNCC	1 cut(s)	738
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	22, 175
SetI	ASST	8 cut(s)	42, 202, 364, 518, 631, 669, 706, 774
SfaNI	GCATC	2 cut(s)	485, 803
SinI	GGWCC	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	108, 447
SsiI	CCGC	2 cut(s)	142, 600
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	779
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	6 cut(s)	75, 279, 492, 567, 615, 680
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	108, 447
TfiI	GAWTC	5 cut(s)	158, 418, 682, 715, 812
Tru1I	TTAA	4 cut(s)	188, 353, 728, 774
Tru9I	TTAA	4 cut(s)	188, 353, 728, 774
TscAI	CASTG	3 cut(s)	490, 650, 659
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	640
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	75, 661, 823
TspRI	CASTG	3 cut(s)	490, 650, 659
VpaK11BI	GGWCC	1 cut(s)	738
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.