Rroxscaffold_2G00152090

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019829
Physical Location & Seq
Forward (+)
89188536 .. 89191888
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152090.1

Sequence Viewer

Length: 381 bp
ATGGTTAGAGCTTCCGGAGTTGGGTCATCAACACAGGGAGCAGGGAATATGGGAGGGCAGGCTGGCGGCCTTATTGCCTTATCTGCGATCTGGTCCGGCGAGAGAATTGTTTACAATGAGATGTACTTGGCATGGGGAGTTAAAACTGATATGCGAAAGCTTGAAGGCACCATGTCCACCATCAAAAGTGCACTCTATGATGTTGAAAAGAGCAATGGAGTAACAAGAGGGCACAAAGTTGGCTGCAACAACTTAAAGATGTGTTTTGCGATGCTTAAGATGTGTTGGATGAGTTTGAATGCGAAGCTTTGCGGAGCCAAGACACTGCGAGAAATGTACGTCGATTCTTCTCACGCTCTAGTCCAATTGCTTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

126

Amino Acids

13.68

Weight (kDa)

9.33

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019829)

Species Orthologous Gene IDs
pyrus_communis pycom14g06190
rosa_multiflora Rmu_co8262551.1_g000001 Rmu_sc0008322.1_g000019
rosa_roxburghii Rroxscaffold_2G00152090
rosa_rugosa Rorug01G0488700
rosa_samantha Rh2AG044800 Rh3BG279700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 2 cut(s) 66, 312
AfaI GTAC 2 cut(s) 125, 338
AfiI CCNNNNNNNGG 1 cut(s) 21
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 164, 206, 298
AluBI AGCT 3 cut(s) 11, 160, 307
AluI AGCT 3 cut(s) 11, 160, 307
Alw21I GWGCWC 1 cut(s) 193
Alw44I GTGCAC 1 cut(s) 189
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 93
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 2 cut(s) 193, 234
BanI GGYRCC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 188
BfaI CTAG 1 cut(s) 359
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 67, 244
BlsI GCNGC 2 cut(s) 68, 245
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 169, 316
BmsI GCATC 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 14
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 220
BseSI GKGCMC 2 cut(s) 193, 234
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 15, 96
BslI CCNNNNNNNGG 1 cut(s) 21
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 193, 234
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 66, 312
BspANI GGCC 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 169, 316
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 220
BssMI GATC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 60, 64
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSLI GKGCMC 2 cut(s) 193, 234
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 60, 64
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 124, 337
CviAII CATG 2 cut(s) 132, 172
CviJI RGCY 7 cut(s) 11, 62, 69, 160, 243, 307, 317
CviKI_1 RGCY 7 cut(s) 11, 62, 69, 160, 243, 307, 317
CviQI GTAC 2 cut(s) 124, 337
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 93
FaeI CATG 2 cut(s) 135, 175
FaiI YATR 5 cut(s) 50, 133, 152, 173, 198
FatI CATG 2 cut(s) 131, 171
Fnu4HI GCNGC 2 cut(s) 67, 244
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 2 cut(s) 67, 244
FspBI CTAG 1 cut(s) 359
GluI GCNGC 2 cut(s) 67, 244
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 15, 96
Hin1II CATG 2 cut(s) 135, 175
HindIII AAGCTT 2 cut(s) 158, 305
HinfI GANTC 1 cut(s) 344
HpaII CCGG 2 cut(s) 15, 96
Hpy166II GTNNAC 3 cut(s) 112, 177, 191
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 3 cut(s) 112, 177, 191
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 191, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 2 cut(s) 135, 175
Kpn2I TCCGGA 1 cut(s) 14
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 38, 314
LpnPI CCDG 7 cut(s) 20, 27, 28, 44, 48, 76, 109
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 339
MfeI CAATTG 1 cut(s) 365
MhlI GDGCHC 2 cut(s) 193, 234
MluCI AATT 2 cut(s) 105, 365
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 2 cut(s) 47, 221
MroI TCCGGA 1 cut(s) 14
MseI TTAA 3 cut(s) 141, 254, 276
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 2 cut(s) 15, 96
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 135, 175
NlaIV GGNNCC 2 cut(s) 169, 316
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 68, 245
PspN4I GGNNCC 2 cut(s) 169, 316
PspPI GGNCC 1 cut(s) 93
RsaI GTAC 2 cut(s) 125, 338
RsaNI GTAC 2 cut(s) 124, 337
SaqAI TTAA 3 cut(s) 141, 254, 276
SatI GCNGC 2 cut(s) 67, 244
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 93
SduI GDGCHC 2 cut(s) 193, 234
SetI ASST 4 cut(s) 13, 162, 309, 342
SfaNI GCATC 1 cut(s) 261
SinI GGWCC 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 2 cut(s) 105, 365
SsiI CCGC 2 cut(s) 66, 312
SspMI CTAG 1 cut(s) 359
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 105, 365
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 3 cut(s) 141, 254, 276
Tru9I TTAA 3 cut(s) 141, 254, 276
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 243
TspRI CASTG 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 275
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 93
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.