Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014407

Physical Location & Seq

Genomic Coordinates Reverse (-)

10373641 .. 10379323

Gene Structure 5683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGCCGTATAAAAGTGTATTTATTTGGGAAAGTGTTATTGGCACTTCAAAAATCTCATTCTAGACTCCTTACAAGTGTATTTTTCTTTCTAAATATAGAAAAGGTAAGCCAATGTCTCTTTATTTGTAGCTGTTTGCTTCTCTCAGTCGAACACTTACAAACAACAATAAACAGCAGAAAAAAGGAAGAAGAAGATGAGCAGCATCGGAACAGGTTACGATCGATCTCCGTCACCACATTCTCCCCCGACGGCCGCGTCTTCCAGATCGAGTACGCCGCCAAAGCCGTCGACAACTCCGGGACTGTCATTGGGATCAAATGTAAGGACGGCGTTGTTATGGGTGTGGAAAAGCTCATAGCGTCGAAGATGATGCTGCCCGGTTCTAATAGAAGGATTCATTCAGTTCATCGCCACTCCGGGATGGCAGTGGCAGGATTAGCTGCAGATGGTAGGCAAATTGTTGCTAGGACCAAGTCTGAAGCCACCAACTATGAAAGTGTGTATGGTGAACAGATTCCTGTTAAGGAACTTGCTGAACGTGTTGCTAGTTATGTGCATTTGTGCACACTATATTGGTGGCTCAGACCTTTTGGATGTGGGATAATCCTTGGTGGTTATGACAGAGATGGGCCACAATTGTACATGGTTGAACCTTCTGGTGTTTCTTATAGGTATTTTGGTGCTGCAATTGGAAAGGGCAGGCAGGCTGCCAAGACAGAGATTGAAAAGTTGAAGCTTTCGGAGTTGACTTGTCGGCAAGGAGTTATTGAAGTAGCCAAGATCATTTATGGAATTCACGATGAGGCAAAGGACAAGGAATTTGAGTTAGAAATGAGCTGGGTCTGTGATGAATCAAACCGTCTGCATCAGAAGGTTCCGGATGAGCTTCTAGAGGAAGCAAAGGCAGCGGCTAAAGCAGCATTGGAAGAAATGGATGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0019773 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

316

Amino Acids

35.31

Weight (kDa)

7.6

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	77 - 96	1.3e-10	Proteasome subunit A N-terminal signature
Proteasome	PF00227	97 - 282	1.6e-51	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27020 AT2G27020
fragaria_vesca	FvH4_5g23670
malus_domestica	MD14G1092100.v1.1
prunus_persica	Prupe.7G022800_v2.0.a1 Prupe.7G022800_v2.0.a1
pyrus_communis	pycom14g08930 pycom14g08970
rosa_chinensis	RchiOBHm_Chr7g0212971
rosa_laevigata	RLG00000002841
rosa_multiflora	Rmu_co8304723.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246370
rosa_samantha	Rh7AG269800 Rh7BG265200 Rh7CG289000 Rh7DG277900
rosa_wichuraiana	Rw7G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	3 cut(s)	256, 279, 911
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	795, 821
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	2 cut(s)	275, 644
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	5 cut(s)	50, 653, 728, 736, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	6 cut(s)	132, 355, 443, 739, 840, 889
AluI	AGCT	6 cut(s)	132, 355, 443, 739, 840, 889
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	565
AlwI	GGATC	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	2 cut(s)	253, 632
ApaLI	GTGCAC	1 cut(s)	565
ApeKI	GCWGC	7 cut(s)	202, 376, 443, 686, 710, 908, 920
ApoI	RAATTY	2 cut(s)	795, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	471, 632
AsuC2I	CCSGG	3 cut(s)	301, 381, 421
AsuHPI	GGTGA	2 cut(s)	226, 521
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	7 cut(s)	214, 363, 430, 673, 697, 920, 932
BccI	CCATC	3 cut(s)	418, 443, 623
BceAI	ACGGC	3 cut(s)	268, 272, 346
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BcnI	CCSGG	3 cut(s)	301, 381, 421
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	4 cut(s)	63, 468, 549, 893
BfmI	CTRYAG	1 cut(s)	444
Bme1390I	CCNGG	3 cut(s)	301, 381, 421
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	471, 632
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	3 cut(s)	301, 381, 421
BmsI	GCATC	4 cut(s)	214, 363, 877, 928
BpiI	GAAGAC	1 cut(s)	253
BpuMI	CCSGG	3 cut(s)	301, 381, 421
Bsa29I	ATCGAT	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	880
BseAI	TCCGGA	1 cut(s)	880
BseCI	ATCGAT	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	4 cut(s)	429, 602, 889, 943
BseMII	CTCAG	2 cut(s)	159, 598
BseSI	GKGCMC	1 cut(s)	569
BseX3I	CGGCCG	1 cut(s)	253
BseXI	GCAGC	7 cut(s)	214, 363, 430, 673, 697, 920, 932
BseYI	CCCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	258
Bsh1285I	CGRYCG	2 cut(s)	224, 256
BshFI	GGCC	2 cut(s)	255, 634
BshVI	ATCGAT	1 cut(s)	224
BsiEI	CGRYCG	2 cut(s)	224, 256
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	4 cut(s)	300, 381, 420, 881
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	255, 634
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	880
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	5 cut(s)	221, 225, 267, 315, 783
BspACI	CCGC	3 cut(s)	256, 279, 911
BspANI	GGCC	2 cut(s)	255, 634
BspCNI	CTCAG	2 cut(s)	158, 597
BspDI	ATCGAT	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	879
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	5 cut(s)	221, 225, 267, 315, 783
BssT1I	CCWWGG	1 cut(s)	610
Bst4CI	ACNGT	2 cut(s)	307, 863
BstAUI	TGTACA	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	704, 708
BstDEI	CTNAG	2 cut(s)	145, 584
BstF5I	GGATG	4 cut(s)	429, 602, 889, 943
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	5 cut(s)	224, 228, 270, 318, 786
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	221, 225, 267, 315, 783
BstMCI	CGRYCG	2 cut(s)	224, 256
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 440, 908, 917, 920
BstSCI	CCNGG	3 cut(s)	299, 379, 419
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	569
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	7 cut(s)	214, 363, 430, 673, 697, 920, 932
BstV2I	GAAGAC	1 cut(s)	253
BstZI	CGGCCG	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	255, 634
BsuTUI	ATCGAT	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	4 cut(s)	429, 602, 889, 943
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	2 cut(s)	704, 708
Cfr13I	GGNCC	2 cut(s)	471, 632
ClaI	ATCGAT	1 cut(s)	224
CseI	GACGC	2 cut(s)	247, 351
Csp6I	GTAC	2 cut(s)	274, 643
CviAII	CATG	1 cut(s)	646
CviQI	GTAC	2 cut(s)	274, 643
DdeI	CTNAG	2 cut(s)	145, 584
DpnI	GATC	5 cut(s)	223, 227, 269, 317, 785
DpnII	GATC	5 cut(s)	221, 225, 267, 315, 783
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	253
EagI	CGGCCG	1 cut(s)	253
EclXI	CGGCCG	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	471
Eco52I	CGGCCG	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	1 cut(s)	649
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	291
FokI	GGATG	3 cut(s)	436, 609, 896
FspBI	CTAG	4 cut(s)	63, 468, 549, 893
GsaI	CCCAGC	1 cut(s)	844
HaeIII	GGCC	2 cut(s)	255, 634
HapII	CCGG	4 cut(s)	300, 381, 420, 881
HgaI	GACGC	2 cut(s)	247, 351
Hin1II	CATG	1 cut(s)	649
HincII	GTYRAC	2 cut(s)	292, 750
HindII	GTYRAC	2 cut(s)	292, 750
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	4 cut(s)	66, 397, 517, 854
HpaII	CCGG	4 cut(s)	300, 381, 420, 881
HphI	GGTGA	2 cut(s)	226, 521
Hpy166II	GTNNAC	4 cut(s)	292, 512, 567, 750
Hpy188I	TCNGA	5 cut(s)	210, 481, 587, 745, 873
Hpy188III	TCNNGA	5 cut(s)	63, 265, 800, 881, 893
Hpy8I	GTNNAC	4 cut(s)	292, 512, 567, 750
Hpy99I	CGWCG	3 cut(s)	254, 293, 367
HpyAV	CCTTC	3 cut(s)	387, 666, 868
HpyCH4III	ACNGT	2 cut(s)	307, 863
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	6 cut(s)	446, 559, 567, 689, 868, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 440, 908, 917, 920
HpyF3I	CTNAG	2 cut(s)	145, 584
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	1 cut(s)	649
Kpn2I	TCCGGA	1 cut(s)	880
Kzo9I	GATC	5 cut(s)	221, 225, 267, 315, 783
Lsp1109I	GCAGC	7 cut(s)	214, 363, 430, 673, 697, 920, 932
LweI	GCATC	4 cut(s)	214, 363, 877, 928
MaeI	CTAG	4 cut(s)	63, 468, 549, 893
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	216, 232
MalI	GATC	5 cut(s)	223, 227, 269, 317, 785
MboI	GATC	5 cut(s)	221, 225, 267, 315, 783
MboII	GAAGA	6 cut(s)	200, 203, 206, 253, 379, 941
MfeI	CAATTG	2 cut(s)	638, 690
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	5 cut(s)	459, 638, 690, 795, 821
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	799, 889
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	2 cut(s)	525, 946
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	4 cut(s)	300, 381, 420, 881
MspR9I	CCNGG	3 cut(s)	301, 381, 421
MunI	CAATTG	2 cut(s)	638, 690
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	284, 440, 908, 917, 920
NciI	CCSGG	3 cut(s)	301, 381, 421
NdeII	GATC	5 cut(s)	221, 225, 267, 315, 783
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	397, 517, 854
PflFI	GACNNNGTC	1 cut(s)	475
PfoI	TCCNGGA	2 cut(s)	299, 419
Ple19I	CGATCG	1 cut(s)	224
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	840
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	2 cut(s)	471, 632
PstI	CTGCAG	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	475
PvuI	CGATCG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	275, 644
RsaNI	GTAC	2 cut(s)	274, 643
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	525, 946
Sau3AI	GATC	5 cut(s)	221, 225, 267, 315, 783
Sau96I	GGNCC	2 cut(s)	471, 632
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	3 cut(s)	301, 381, 421
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	4 cut(s)	214, 363, 877, 928
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	471
Sse9I	AATT	5 cut(s)	459, 638, 690, 795, 821
SsiI	CCGC	3 cut(s)	256, 279, 911
SspMI	CTAG	4 cut(s)	63, 468, 549, 893
StyD4I	CCNGG	3 cut(s)	299, 379, 419
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	307, 863
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	5 cut(s)	150, 224, 270, 291, 365
TasI	AATT	5 cut(s)	459, 638, 690, 795, 821
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	3 cut(s)	258, 281, 914
TfiI	GAWTC	3 cut(s)	397, 517, 854
Tru1I	TTAA	2 cut(s)	525, 946
Tru9I	TTAA	2 cut(s)	525, 946
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	7 cut(s)	202, 376, 443, 686, 710, 908, 920
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	4 cut(s)	389, 398, 510, 867
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	435
Tth111I	GACNNNGTC	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	2 cut(s)	795, 821
XbaI	TCTAGA	2 cut(s)	62, 892
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	4 cut(s)	63, 468, 549, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.