pycom14g13140

SNF1-related protein kinase regulatory subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
16129870 .. 16132136
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
ATGGGTGTGCCGGCGGTGACGACGACGGGGGAGGGAGGGAGTCCGAGGAGTCCAGAGGCGAAGCTGGGGATGCAGGTAGAGGATTTGTGGGACGTTCAGGAGCCACAGCTGAGTCCAACTGAGAAGCTCAATGCTTGTTTTGAGAGCGTCCCTGTTTCTGCTTTCCCTCCTGCTCCTGAGAATCAAGTGATTGAGATAAGGTCAGACACCAGTTTAGCTGAAGCTGTTAAAATCCTGGCCCAACACAAAATTCTTGGTGCACCGGTGGTGGATGTCGATGCGCCTGAGGACGCTAGCTGGATCGACAGATACATTGGCATTGTTGAGTTTGCCGGAATTGTCGTGTGGATTCTGCATCAGTCAGAACCAACGTCCCCGAGGACCCCAACTAGTCCATCTAGTGCAACTGCTATGGCAGCAGCAGCTAATGGACTGAAAGGTCTTGATCTTGCAGGACTCGATTTCGTCTCTGATTTTGCCGCAGCAACTTCTGGAAGTTTTTTCGAGGCTTTGACTTCTTCCGAGTTTTACAAGAACACACAGGTTCGAGATATCTCGGGGTCATTTCGCTGGGCTCCGTTTCTTGCTTTGCAGAGCTCAAACTCGTTTTTGACCATGCTTTTGCTGCTTTCAAAGTACAAAATGAAGAGTGTTCCTGTAGTTGATTTGGGTGATGGAAAGATTGATAATATCATCACACAATCTGCTGTGATTCACATGTTAGCGGAATGCGCTGGACTTCAGTGGTTCGAGAGCTGGGGAAAGAAGAAACTATCCGAGCTTGGTCTTCCCATGATGACTGCTAATTGCATTGTCAAGGTGTACGAGGATGAACCGGTGCTGCAAGCGTTTAAGCTGATGAGGAAAAAGAGGGTTGGAGGGGTACCCGTGATTGAAAATGGCGGTAGCAAGGCAGTAGGTAATATAAGCCTAAGAGATGTTCAGTTCTTGCTTACTGCACCAGAAATATACCATGATTACAGGTCCATCACAGCGAAGAACTTCCTGACAGCGGTTGAAAGCTATCTAGAGAAGCATCAGGGAGTCTACCCGACGTTGAGTACCATGGTTACGTGCAAAAGGGATGACACAATTAAGGACTTAATCCTGATGCTGGACTCCAAGAAGATCCACAGAGTATATGTTGTGGACGATGATGGGAATCTGGAAGGAGTCATTACGCTTAGGGACATTATTTCAAGGCTAGTTCACGAGCCCCGTGGCTACTTTGGTGATTTTTTTGACGGTGTTCTACCGCTGCCTCAGAATAGCAGGGTTTAA

Protein Analysis

427

Amino Acids

46.61

Weight (kDa)

5.17

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 271 - 314 1.2e-08 CBS domain
CBS PF00571 356 - 403 3.5e-11 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48530
fragaria_vesca FvH4_5g08190 FvH4_5g08190 FvH4_5g08190
malus_domestica MD06G1142700.v1.1 MD14G1157900.v1.1
prunus_persica Prupe.5G152000_v2.0.a1 Prupe.5G152000_v2.0.a1
pyrus_communis pycom14g13140
rosa_chinensis RchiOBHm_Chr7g0190321
rosa_laevigata RLG00000004542
rosa_multiflora Rmu_sc0005487.1_g000002
rosa_roxburghii Rroxscaffold_3G00264730
rosa_rugosa Rorug06G0503900
rosa_samantha Rh7DG112500
rosa_wichuraiana Rw7G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 883
AccB1I GGYRCC 1 cut(s) 883
AccI GTMKAC 1 cut(s) 1047
AciI CCGC 6 cut(s) 14, 480, 725, 903, 1013, 1256
AclWI GGATC 2 cut(s) 308, 1123
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 240, 725
AfaI GTAC 4 cut(s) 638, 824, 885, 1063
AfiI CCNNNNNNNGG 2 cut(s) 1012, 1114
AflIII ACRYGT 1 cut(s) 717
AgeI ACCGGT 2 cut(s) 262, 835
AgsI TTSAA 4 cut(s) 633, 896, 1019, 1200
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 1 cut(s) 234
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
Alw21I GWGCWC 2 cut(s) 262, 599
Alw26I GTCTC 1 cut(s) 472
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 2 cut(s) 308, 1123
Ama87I CYCGRG 2 cut(s) 376, 556
AoxI GGCC 1 cut(s) 237
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 7 cut(s) 416, 419, 422, 482, 625, 841, 1258
ApoI RAATTY 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 604, 636
AsiGI ACCGGT 2 cut(s) 262, 835
Asp700I GAANNNNTTC 1 cut(s) 1001
Asp718I GGTACC 1 cut(s) 883
AspLEI GCGC 2 cut(s) 283, 734
AspS9I GGNCC 3 cut(s) 238, 381, 984
AsuHPI GGTGA 3 cut(s) 28, 683, 1244
AsuNHI GCTAGC 1 cut(s) 293
AvaI CYCGRG 2 cut(s) 376, 556
AvaII GGWCC 2 cut(s) 381, 984
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 3 cut(s) 577, 599, 1218
BauI CACGAG 1 cut(s) 1211
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 2 cut(s) 262, 599
BbvI GCAGC 7 cut(s) 428, 431, 434, 494, 612, 828, 1245
BccI CCATC 4 cut(s) 403, 668, 995, 1151
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 472
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 5 cut(s) 294, 390, 399, 1028, 1205
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 8 cut(s) 417, 420, 423, 480, 483, 626, 842, 1259
BlsI GCNGC 8 cut(s) 418, 421, 424, 481, 484, 627, 843, 1260
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 2 cut(s) 381, 984
BmeT110I CYCGRG 2 cut(s) 376, 556
BmgT120I GGNCC 3 cut(s) 238, 381, 984
BmiI GGNNCC 4 cut(s) 102, 383, 576, 885
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 5 cut(s) 60, 268, 364, 1045, 1101
BmtI GCTAGC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 779
Bpu10I CCTNAGC 1 cut(s) 1184
BsaAI YACGTR 1 cut(s) 1074
BsaBI GATNNNNATC 1 cut(s) 1161
BsaJI CCNNGG 4 cut(s) 44, 377, 1065, 1219
BsaWI WCCGGW 2 cut(s) 262, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 1012, 1114
Bse118I RCCGGY 3 cut(s) 10, 262, 835
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 1161
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 4 cut(s) 44, 377, 1065, 1219
BseGI GGATG 4 cut(s) 75, 277, 835, 1090
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 2 cut(s) 1012, 1114
BseMII CTCAG 5 cut(s) 101, 111, 168, 276, 1277
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 7 cut(s) 428, 431, 434, 494, 612, 828, 1245
BseYI CCCAGC 3 cut(s) 64, 570, 756
BsgI GTGCAG 1 cut(s) 942
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 883
BshTI ACCGGT 2 cut(s) 262, 835
BsiHKAI GWGCWC 2 cut(s) 262, 599
BsiHKCI CYCGRG 2 cut(s) 376, 556
BsiSI CCGG 4 cut(s) 11, 263, 333, 836
BslFI GGGAC 4 cut(s) 104, 134, 358, 1202
BslI CCNNNNNNNGG 2 cut(s) 1012, 1114
BsmAI GTCTC 1 cut(s) 472
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 4 cut(s) 104, 134, 358, 1202
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 1 cut(s) 239
BsoBI CYCGRG 2 cut(s) 376, 556
Bsp1286I GDGCHC 4 cut(s) 262, 577, 599, 1218
Bsp143I GATC 3 cut(s) 300, 445, 1128
Bsp19I CCATGG 1 cut(s) 1065
BspACI CCGC 6 cut(s) 14, 480, 725, 903, 1013, 1256
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 5 cut(s) 102, 112, 169, 277, 1276
BspLI GGNNCC 4 cut(s) 102, 383, 576, 885
BspMI ACCTGC 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 2 cut(s) 308, 1123
BspT107I GGYRCC 1 cut(s) 883
BsrFI RCCGGY 3 cut(s) 10, 262, 835
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 3 cut(s) 10, 262, 835
BssECI CCNNGG 4 cut(s) 44, 377, 1065, 1219
BssMI GATC 3 cut(s) 300, 445, 1128
BssSI CACGAG 1 cut(s) 1211
BssT1I CCWWGG 1 cut(s) 1065
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 1247
Bst6I CTCTTC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 1074
BstC8I GCNNGC 3 cut(s) 12, 295, 846
BstDEI CTNAG 7 cut(s) 110, 120, 177, 285, 932, 1184, 1263
BstDSI CCRYGG 2 cut(s) 1065, 1219
BstF5I GGATG 4 cut(s) 75, 277, 835, 1090
BstHHI GCGC 2 cut(s) 283, 734
BstKTI GATC 3 cut(s) 303, 448, 1131
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 3 cut(s) 300, 445, 1128
BstMWI GCNNNNNNNGC 5 cut(s) 70, 416, 422, 625, 731
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 7 cut(s) 428, 431, 434, 494, 612, 828, 1245
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 1128
BstYI RGATCY 1 cut(s) 1128
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 2 cut(s) 1065, 1219
BtsCI GGATG 4 cut(s) 75, 277, 835, 1090
BtsIMutI CAGTG 1 cut(s) 749
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 12, 295, 846
CfoI GCGC 2 cut(s) 283, 734
Cfr10I RCCGGY 3 cut(s) 10, 262, 835
Cfr13I GGNCC 3 cut(s) 238, 381, 984
CseI GACGC 2 cut(s) 136, 299
Csp6I GTAC 4 cut(s) 637, 823, 884, 1062
CspAI ACCGGT 2 cut(s) 262, 835
CviAII CATG 5 cut(s) 616, 718, 793, 974, 1066
CviQI GTAC 4 cut(s) 637, 823, 884, 1062
DdeI CTNAG 7 cut(s) 110, 120, 177, 285, 932, 1184, 1263
DpnI GATC 3 cut(s) 302, 447, 1130
DpnII GATC 3 cut(s) 300, 445, 1128
DrdI GACNNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 1065
Eco24I GRGCYC 3 cut(s) 577, 599, 1218
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 381, 984
Eco53kI GAGCTC 1 cut(s) 597
Eco57I CTGAAG 2 cut(s) 240, 725
Eco81I CCTNAGG 1 cut(s) 285
Eco88I CYCGRG 2 cut(s) 376, 556
EcoICRI GAGCTC 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 234
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 1065
EcoT38I GRGCYC 3 cut(s) 577, 599, 1218
ErhI CCWWGG 1 cut(s) 1065
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 5 cut(s) 619, 721, 796, 977, 1069
FaqI GGGAC 4 cut(s) 104, 134, 358, 1202
FatI CATG 5 cut(s) 615, 717, 792, 973, 1065
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 8 cut(s) 417, 420, 423, 480, 483, 626, 842, 1259
FokI GGATG 4 cut(s) 82, 284, 842, 1097
FriOI GRGCYC 3 cut(s) 577, 599, 1218
Fsp4HI GCNGC 8 cut(s) 417, 420, 423, 480, 483, 626, 842, 1259
FspBI CTAG 5 cut(s) 294, 390, 399, 1028, 1205
GlaI GCGC 2 cut(s) 282, 733
GluI GCNGC 8 cut(s) 417, 420, 423, 480, 483, 626, 842, 1259
GsaI CCCAGC 3 cut(s) 68, 574, 760
HaeIII GGCC 1 cut(s) 239
HapII CCGG 4 cut(s) 11, 263, 333, 836
HgaI GACGC 2 cut(s) 136, 299
HhaI GCGC 2 cut(s) 283, 734
Hin1II CATG 5 cut(s) 619, 721, 796, 977, 1069
Hin6I GCGC 2 cut(s) 281, 732
HinP1I GCGC 2 cut(s) 281, 732
HpaII CCGG 4 cut(s) 11, 263, 333, 836
HphI GGTGA 3 cut(s) 28, 683, 1244
Hpy166II GTNNAC 5 cut(s) 260, 823, 1048, 1150, 1210
Hpy188I TCNGA 7 cut(s) 45, 205, 364, 472, 523, 778, 1266
Hpy8I GTNNAC 5 cut(s) 260, 823, 1048, 1150, 1210
Hpy99I CGWCG 3 cut(s) 25, 28, 1057
HpyAV CCTTC 1 cut(s) 1163
HpyCH4III ACNGT 1 cut(s) 1247
HpyCH4IV ACGT 4 cut(s) 93, 371, 1055, 1073
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 416, 422, 625, 731
HpyF3I CTNAG 7 cut(s) 110, 120, 177, 285, 932, 1184, 1263
HpySE526I ACGT 4 cut(s) 93, 371, 1055, 1073
Hsp92II CATG 5 cut(s) 619, 721, 796, 977, 1069
HspAI GCGC 2 cut(s) 281, 732
KpnI GGTACC 1 cut(s) 887
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 3 cut(s) 300, 445, 1128
LmnI GCTCC 3 cut(s) 100, 178, 580
Lsp1109I GCAGC 7 cut(s) 428, 431, 434, 494, 612, 828, 1245
LweI GCATC 5 cut(s) 60, 268, 364, 1045, 1101
MaeI CTAG 5 cut(s) 294, 390, 399, 1028, 1205
MaeII ACGT 4 cut(s) 93, 371, 1055, 1073
MaeIII GTNAC 2 cut(s) 16, 1069
MalI GATC 3 cut(s) 302, 447, 1130
MboI GATC 3 cut(s) 300, 445, 1128
MboII GAAGA 6 cut(s) 510, 658, 778, 779, 1009, 1138
MflI RGATCY 1 cut(s) 1128
MhlI GDGCHC 4 cut(s) 262, 577, 599, 1218
MluCI AATT 4 cut(s) 249, 336, 805, 1092
MlyI GAGTC 7 cut(s) 49, 58, 121, 450, 1053, 1112, 1182
MmeI TCCRAC 2 cut(s) 140, 856
MroNI GCCGGC 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 1001
MseI TTAA 5 cut(s) 228, 852, 1095, 1103, 1279
MspA1I CMGCKG 3 cut(s) 109, 1013, 1258
MspI CCGG 4 cut(s) 11, 263, 333, 836
MspR9I CCNGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 5 cut(s) 70, 416, 422, 625, 731
NaeI GCCGGC 1 cut(s) 12
NcoI CCATGG 1 cut(s) 1065
NdeII GATC 3 cut(s) 300, 445, 1128
NgoMIV GCCGGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 5 cut(s) 619, 721, 796, 977, 1069
NlaIV GGNNCC 4 cut(s) 102, 383, 576, 885
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 721
PciI ACATGT 1 cut(s) 717
PctI GAATGC 1 cut(s) 734
PdiI GCCGGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 1001
PfeI GAWTC 4 cut(s) 181, 349, 712, 1162
PinAI ACCGGT 2 cut(s) 262, 835
PkrI GCNGC 8 cut(s) 418, 421, 424, 481, 484, 627, 843, 1260
PleI GAGTC 7 cut(s) 48, 57, 120, 450, 1052, 1112, 1181
PpsI GAGTC 7 cut(s) 48, 57, 120, 450, 1052, 1112, 1181
Ppu21I YACGTR 1 cut(s) 1074
PpuMI RGGWCCY 1 cut(s) 381
PscI ACATGT 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 234
PspFI CCCAGC 3 cut(s) 64, 570, 756
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 4 cut(s) 102, 383, 576, 885
PspPI GGNCC 3 cut(s) 238, 381, 984
PspPPI RGGWCCY 1 cut(s) 381
PsuI RGATCY 1 cut(s) 1128
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 4 cut(s) 638, 824, 885, 1063
RsaNI GTAC 4 cut(s) 637, 823, 884, 1062
SacI GAGCTC 1 cut(s) 599
SaqAI TTAA 5 cut(s) 228, 852, 1095, 1103, 1279
SatI GCNGC 8 cut(s) 417, 420, 423, 480, 483, 626, 842, 1259
Sau3AI GATC 3 cut(s) 300, 445, 1128
Sau96I GGNCC 3 cut(s) 238, 381, 984
SchI GAGTC 7 cut(s) 49, 58, 121, 450, 1053, 1112, 1182
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 4 cut(s) 262, 577, 599, 1218
SfaNI GCATC 5 cut(s) 60, 268, 364, 1045, 1101
SfcI CTRYAG 1 cut(s) 657
SgrAI CRCCGGYG 1 cut(s) 262
SinI GGWCC 2 cut(s) 381, 984
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 4 cut(s) 249, 336, 805, 1092
SsiI CCGC 6 cut(s) 14, 480, 725, 903, 1013, 1256
SspMI CTAG 5 cut(s) 294, 390, 399, 1028, 1205
SstI GAGCTC 1 cut(s) 599
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 1 cut(s) 1247
TaiI ACGT 4 cut(s) 96, 374, 1058, 1076
TaqI TCGA 6 cut(s) 276, 303, 459, 504, 547, 750
TasI AATT 4 cut(s) 249, 336, 805, 1092
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 4 cut(s) 181, 349, 712, 1162
Tru1I TTAA 5 cut(s) 228, 852, 1095, 1103, 1279
Tru9I TTAA 5 cut(s) 228, 852, 1095, 1103, 1279
TscAI CASTG 1 cut(s) 749
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 7 cut(s) 416, 419, 422, 482, 625, 841, 1258
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 659, 846
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 1 cut(s) 749
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 2 cut(s) 381, 984
XapI RAATTY 1 cut(s) 249
XbaI TCTAGA 1 cut(s) 1027
XceI RCATGY 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 1047
XmnI GAANNNNTTC 1 cut(s) 1001
XspI CTAG 5 cut(s) 294, 390, 399, 1028, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.