pycom14g16600

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0017063
Physical Location & Seq
Forward (+)
18838556 .. 18839223
668 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGGCAATGGCTAAGCTTGTCTGCTTTCTGCTGCTAGCACTCCTTGGGATTTCCATGGCTGCAACCCAGGTTATGGCAAAAGAAGAAGCCCGGAATCAGTTGGACAGTGGAGGATATGGTCCTGGGAGTCTCAAGAGCTACCAATGCCCATCACAATGCACCAGGAGATGCAGCCAGACACAATACCACAAGCCATGCATGTTCTTCTGCCAGAAATGCTGTGCCAAGTGCCTCTGTGTTCCTCCTGGCTTCTACGGCAACAAAGCTGTGTGCCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCAAAATGCCCTTGA

Protein Analysis

108

Amino Acids

11.73

Weight (kDa)

9.02

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 48 - 107 3.9e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74670
fragaria_vesca FvH4_5g14950
malus_domestica MD14G1200300.v1.1
prunus_persica Prupe.5G193400_v2.0.a1
pyrus_communis pycom14g16600
rosa_chinensis RchiOBHm_Chr7g0181391
rosa_multiflora Rmu_sc0002060.1_g000012 Rmu_sc0004621.1_g000013
rosa_roxburghii Rroxscaffold_3G00272050
rosa_rugosa Rorug06G0440600
rosa_samantha Rh7AG042800 Rh7BG042100
rosa_wichuraiana Rw7G003560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 73
AjnI CCWGG 4 cut(s) 66, 121, 161, 244
AluBI AGCT 3 cut(s) 16, 138, 266
AluI AGCT 3 cut(s) 16, 138, 266
Alw26I GTCTC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 31, 59, 171
AspS9I GGNCC 2 cut(s) 119, 308
AsuC2I CCSGG 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 34
AvaII GGWCC 2 cut(s) 119, 308
BaeGI GKGCMC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 18, 46, 183
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 4 cut(s) 68, 123, 163, 246
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 32, 60, 172
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 3 cut(s) 33, 61, 173
Bme1390I CCNGG 5 cut(s) 68, 91, 123, 163, 246
Bme18I GGWCC 2 cut(s) 119, 308
BmgT120I GGNCC 2 cut(s) 119, 308
BmrFI CCNGG 5 cut(s) 68, 91, 123, 163, 246
BmsI GCATC 1 cut(s) 158
BmtI GCTAGC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 4 cut(s) 43, 54, 66, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 4 cut(s) 68, 123, 163, 246
BseDI CCNNGG 4 cut(s) 43, 54, 66, 122
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 3 cut(s) 18, 46, 183
BseYI CCCAGC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 275
Bsp1720I GCTNAGC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 54
BspOI GCTAGC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 43, 54, 66, 122
BssT1I CCWWGG 2 cut(s) 43, 54
Bst2UI CCWGG 4 cut(s) 68, 123, 163, 246
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 134
BstMWI GCNNNNNNNGC 3 cut(s) 144, 216, 255
BstNI CCWGG 4 cut(s) 68, 123, 163, 246
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 5 cut(s) 66, 89, 121, 161, 244
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 18, 46, 183
BstV2I GAAGAC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 119, 308
CviAII CATG 3 cut(s) 55, 195, 199
CviJI RGCY 9 cut(s) 11, 16, 59, 89, 138, 174, 193, 249, 266
CviKI_1 RGCY 9 cut(s) 11, 16, 59, 89, 138, 174, 193, 249, 266
DdeI CTNAG 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 43, 54
Eco47I GGWCC 2 cut(s) 119, 308
EcoRII CCWGG 4 cut(s) 66, 121, 161, 244
EcoT14I CCWWGG 2 cut(s) 43, 54
EcoT22I ATGCAT 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 43, 54
FaeI CATG 3 cut(s) 58, 198, 202
FaiI YATR 5 cut(s) 56, 74, 117, 196, 200
FatI CATG 3 cut(s) 54, 194, 198
Fnu4HI GCNGC 3 cut(s) 32, 60, 172
Fsp4HI GCNGC 3 cut(s) 32, 60, 172
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 32, 60, 172
GsaI CCCAGC 1 cut(s) 301
HapII CCGG 1 cut(s) 91
Hin1II CATG 3 cut(s) 58, 198, 202
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 94, 127
HpaII CCGG 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 4 cut(s) 62, 159, 171, 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 216, 255
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 3 cut(s) 58, 198, 202
Lsp1109I GCAGC 3 cut(s) 18, 46, 183
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 35
MboII GAAGA 3 cut(s) 95, 196, 304
MhlI GDGCHC 1 cut(s) 275
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 104, 242, 252, 299
Mph1103I ATGCAT 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 154
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 5 cut(s) 68, 91, 123, 163, 246
MvaI CCWGG 4 cut(s) 68, 123, 163, 246
MwoI GCNNNNNNNGC 3 cut(s) 144, 216, 255
NciI CCSGG 1 cut(s) 91
NcoI CCATGG 1 cut(s) 54
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 58, 198, 202
NsiI ATGCAT 1 cut(s) 200
NspI RCATGY 1 cut(s) 202
PfeI GAWTC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 3 cut(s) 33, 61, 173
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 4 cut(s) 66, 121, 161, 244
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 4 cut(s) 66, 121, 161, 244
PspPI GGNCC 2 cut(s) 119, 308
RseI CAYNNNNRTG 1 cut(s) 154
SatI GCNGC 3 cut(s) 32, 60, 172
Sau96I GGNCC 2 cut(s) 119, 308
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 5 cut(s) 68, 91, 123, 163, 246
SduI GDGCHC 1 cut(s) 275
SetI ASST 4 cut(s) 18, 72, 140, 268
SfaNI GCATC 1 cut(s) 158
SinI GGWCC 2 cut(s) 119, 308
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 5 cut(s) 66, 89, 121, 161, 244
StyI CCWWGG 2 cut(s) 43, 54
TaaI ACNGT 1 cut(s) 107
TfiI GAWTC 1 cut(s) 94
TscAI CASTG 1 cut(s) 112
TseI GCWGC 3 cut(s) 31, 59, 171
TspRI CASTG 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 119, 308
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.