pycom14g17040

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015628
Physical Location & Seq
Forward (+)
19129389 .. 19131999
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1884 bp
ATGGGGGAGATTGATACAAAACCAACTGAACCAGTCCAGGCTGCATTGTCCCTGTTTGAAGAGAAGAACGATCACCGAAAAACCCGGCTTTCCGGCACAGATGTAAGTAACCATTTTCTTGATAGGCTGTTTTGGCATGCAAATATTGTTCTTAAGTTTGTTGATTCCGACAATATTTTGCAGAAGGATAGTGAGAAAGAGAGAGAGCTTGAAGGTGTGTTGAAGGATTTGGCCAATTACAAGGTGCAGCTGGAAGCAAAAGATGCTTCCTACATGCAAGCCCCTCTCAAGCTGCAACACCACGAGTACACAGCGGACGAACTCTCTGCCCTCCTTGAAAACATCGAGTTTGAGAGAGATAAGTGCGTCGAGGAATGTAAAGAGGCTCGGGCGGAGATATACCAACTCGAATCCAAGGTAAAGGAAATGGGGGATCAGCTGACTGAGACTCAAAAGGTGAGAGAGCAACTCATGCATGTTTTTGGTGAGTTGAAGGCTACACAATCAGAGCTGCTTGGCATGGAAACAAAACTAGCGGACGCTAGAGATTCGGAGCTAAAAGCTCTAACGGTGGAAGAGCTTAAACACGTCTCGGAGCTAAGTGAAGCCGTGGTCAAGTCAAAGGTTGCTGCTAGTGAAACAGATAAAGAGAAGTTGGCGATATTATCTGCGAAGGATACTGAGATTGAGTTAGCTACACAGGCTGCTCTTCAAGCGCAGGAGCAGCTCGAATATTCTAAGAAACAAACGGTGAAGATGGAGGAGTTGGAGGATCAGCTCCTCGCCAAGTCTTCGTTCATTGAGATGCTTCAGCTGGAGATTAAACAGGTGAATGAAAACCTTAGCTTCCCTGGGATGGCGTCTTCTGACGCGATGAATGACTTGAAGCAGCTGGAAAAAGAGTTAGAAGAGAAGGAAAGAAAGATCTCGGATCAGGAAGGTTTCATCGAGGGGCTAGAAATGGAACTGAATCAGTTAAAATTGGAGCTTAGTGATGCAAATCAAGTGGCCAACAGCCTGAAGCGCGACATTGAAGTTCTTACTGAGGATTTACAGAAAGCTAAAATAGAGCTTGATGAGATGGCGGAAAGGGAAAACAATGCGCAGGTTGAGATAGCAATGCTGGAATCTGAGCTTCATAGAGGGAGGTCAAAAATTGCAGCAGCAGAGGCAGCTGAAGCAAGAACCGAAAATGTTAAATCGGGGTTGTACCTTGCGATTCATCAACTGGTAATAGAAGCCGAGACTGCCAAGATGGAAAACAGAATGTTAAAGCAAGGAGCAGATAGCGCAGACGAAGAAACTGACAAACACTCTCCCCTTTTTTATTCTAATGAAGATGCTGAGGTTTCCAAAATTGGTGAACTTAAGGAAGAAGCTGAAGAGCGACAGGAAGAGAATGATTCCCATGTAACAATTTCATTGAAGGAATACAAGTACTTGGTTAAGAAGGCTGACCAGGCTGATCAAATTCCTTTGTCATTGGTGGAAGCCTTTAGTCGGCAGTTGAGCTTCAGCACCGCAGGAGATAAGTCTGAGTTGGAACATTTGAAGAAGGAGTTGGAAGCTGCAATGGAAAAAGTTGCGCAATTCAGGAACCGGGCTGAGCAGGCTACTACTAGGGCTGATCTTGCCGAGAGAGCGAAAGAAAGACTAGAGTACCGGATAAGGATTTGGCGAAAGGTGAGGCAAAAGAGAAGAGCTGCTCTTGCTGCGCTTAGGGAGGTGTCTCTTCCTAAACAATTTAGCCCTCCCGCATATGAATCTCCAGATGAAATTAAGCCTCCTGCATATGAATCTCCAGATGAATTGAAGCCTAATGCATCAGAAGAAATACAAAAAACATATCCGCAATTGCGTGACGTACTTAAAATGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

628

Amino Acids

71.62

Weight (kDa)

4.89

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 60 - 436 1.7e-08 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14430
malus_domestica MD06G1198500.v1.1 MD14G1206000.v1.1
prunus_persica Prupe.5G199300_v2.0.a1 Prupe.5G199300_v2.0.a1
pyrus_communis pycom14g17040
rosa_chinensis RchiOBHm_Chr7g0182231
rosa_laevigata RLG00000005138
rosa_multiflora Rmu_sc0000003.1_g000012
rosa_roxburghii Rroxscaffold_3G00271400
rosa_rugosa Rorug06G0446300
rosa_samantha Rh7AG049300 Rh7BG049400 Rh7CG050700 Rh7DG048600
rosa_wichuraiana Rw7G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1104, 1587
Acc36I ACCTGC 1 cut(s) 1096
AccII CGCG 2 cut(s) 872, 1026
AciI CCGC 7 cut(s) 314, 392, 536, 1085, 1521, 1755, 1850
AclWI GGATC 3 cut(s) 441, 780, 939
AcoI YGGCCR 2 cut(s) 231, 1008
AcsI RAATTY 2 cut(s) 1470, 1877
AcuI CTGAAG 5 cut(s) 794, 1040, 1197, 1401, 1498
AcyI GRCGYC 1 cut(s) 860
AfaI GTAC 5 cut(s) 308, 1211, 1439, 1661, 1866
AfiI CCNNNNNNNGG 2 cut(s) 856, 1500
AflII CTTAAG 2 cut(s) 152, 1367
AflIII ACRYGT 1 cut(s) 586
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 3 cut(s) 36, 850, 1458
AjuI GAANNNNNNNTTGG 4 cut(s) 779, 811, 1544, 1576
Alw26I GTCTC 4 cut(s) 440, 595, 1238, 1734
AlwI GGATC 3 cut(s) 441, 780, 939
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 2 cut(s) 231, 1008
ApoI RAATTY 2 cut(s) 1470, 1877
AspLEI GCGC 6 cut(s) 718, 1026, 1105, 1292, 1588, 1717
AsuC2I CCSGG 2 cut(s) 85, 1601
AsuHPI GGTGA 7 cut(s) 65, 469, 497, 763, 841, 1373, 1696
AvaI CYCGRG 1 cut(s) 387
BaeI ACNNNNGTAYC 2 cut(s) 1643, 1676
BalI TGGCCA 2 cut(s) 233, 1010
BauI CACGAG 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 783, 855
BbvCI CCTCAGC 1 cut(s) 1344
BccI CCATC 4 cut(s) 751, 850, 1075, 1249
BceAI ACGGC 1 cut(s) 593
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 3 cut(s) 38, 852, 1460
BciVI GTATCC 1 cut(s) 670
BclI TGATCA 1 cut(s) 1465
BcnI CCSGG 2 cut(s) 85, 1601
BcoDI GTCTC 4 cut(s) 440, 595, 1238, 1734
BfaI CTAG 7 cut(s) 533, 543, 633, 956, 1620, 1655, 1882
BfrI CTTAAG 2 cut(s) 152, 1367
BfuAI ACCTGC 1 cut(s) 1096
BfuI GTATCC 1 cut(s) 670
BglII AGATCT 1 cut(s) 924
BlpI GCTNAGC 1 cut(s) 1605
BmcAI AGTACT 1 cut(s) 1439
Bme1390I CCNGG 5 cut(s) 38, 85, 852, 1460, 1601
BmeT110I CYCGRG 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 589
BmiI GGNNCC 1 cut(s) 1598
BmrFI CCNGG 5 cut(s) 38, 85, 852, 1460, 1601
BmsI GCATC 5 cut(s) 253, 795, 985, 1330, 1832
BpiI GAAGAC 2 cut(s) 783, 855
BplI GAGNNNNNCTC 2 cut(s) 453, 485
BpmI CTGGAG 3 cut(s) 836, 1752, 1785
Bpu10I CCTNAGC 3 cut(s) 842, 1344, 1718
Bpu1102I GCTNAGC 1 cut(s) 1605
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 85, 1601
BsaBI GATNNNNATC 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 860
BsaJI CCNNGG 4 cut(s) 414, 609, 850, 851
BsaWI WCCGGW 1 cut(s) 1662
Bsc4I CCNNNNNNNGG 2 cut(s) 856, 1500
Bse1I ACTGG 2 cut(s) 32, 1233
Bse3DI GCAATG 2 cut(s) 1125, 1578
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 3 cut(s) 38, 852, 1460
BseDI CCNNGG 4 cut(s) 414, 609, 850, 851
BseGI GGATG 1 cut(s) 861
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 2 cut(s) 856, 1500
BseMI GCAATG 2 cut(s) 1125, 1578
BseMII CTCAG 7 cut(s) 435, 672, 1035, 1122, 1335, 1527, 1596
BseNI ACTGG 2 cut(s) 32, 1233
BseRI GAGGAG 2 cut(s) 770, 776
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 2 cut(s) 872, 1026
BshFI GGCC 2 cut(s) 233, 1010
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 4 cut(s) 85, 93, 1600, 1663
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 856, 1500
BsmAI GTCTC 4 cut(s) 440, 595, 1238, 1734
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 2 cut(s) 233, 1010
BsoBI CYCGRG 1 cut(s) 387
Bsp143I GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
Bsp1720I GCTNAGC 1 cut(s) 1605
BspACI CCGC 7 cut(s) 314, 392, 536, 1085, 1521, 1755, 1850
BspANI GGCC 2 cut(s) 233, 1010
BspCNI CTCAG 7 cut(s) 436, 673, 1036, 1123, 1336, 1528, 1597
BspFNI CGCG 2 cut(s) 872, 1026
BspLI GGNNCC 1 cut(s) 1598
BspMI ACCTGC 1 cut(s) 1096
BspPI GGATC 3 cut(s) 441, 780, 939
BspQI GCTCTTC 4 cut(s) 570, 714, 1377, 1693
BspTI CTTAAG 2 cut(s) 152, 1367
BsrDI GCAATG 2 cut(s) 1125, 1578
BsrI ACTGG 2 cut(s) 32, 1233
BssECI CCNNGG 4 cut(s) 414, 609, 850, 851
BssMI GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
BssNI GRCGYC 1 cut(s) 860
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 302
Bst2UI CCWGG 3 cut(s) 38, 852, 1460
Bst4CI ACNGT 2 cut(s) 571, 751
Bst6I CTCTTC 8 cut(s) 54, 570, 714, 903, 1377, 1389, 1693, 1737
BstACI GRCGYC 1 cut(s) 860
BstAFI CTTAAG 2 cut(s) 152, 1367
BstAPI GCANNNNNTGC 2 cut(s) 263, 472
BstC8I GCNNGC 3 cut(s) 138, 279, 1611
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 1 cut(s) 861
BstFNI CGCG 2 cut(s) 872, 1026
BstHHI GCGC 6 cut(s) 718, 1026, 1105, 1292, 1588, 1717
BstKTI GATC 7 cut(s) 73, 436, 775, 927, 934, 1468, 1630
BstMAI GTCTC 4 cut(s) 440, 595, 1238, 1734
BstMBI GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
BstNI CCWGG 3 cut(s) 38, 852, 1460
BstNSI RCATGY 3 cut(s) 140, 277, 479
BstSCI CCNGG 5 cut(s) 36, 83, 850, 1458, 1599
BstUI CGCG 2 cut(s) 872, 1026
BstV2I GAAGAC 2 cut(s) 783, 855
BstX2I RGATCY 1 cut(s) 924
BstYI RGATCY 1 cut(s) 924
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 2 cut(s) 233, 1010
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 887
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 1096
Cac8I GCNNGC 3 cut(s) 138, 279, 1611
CfoI GCGC 6 cut(s) 718, 1026, 1105, 1292, 1588, 1717
CseI GACGC 4 cut(s) 355, 548, 849, 878
Csp6I GTAC 5 cut(s) 307, 1210, 1438, 1660, 1865
CspCI CAANNNNNGTGG 2 cut(s) 987, 1022
CviAII CATG 6 cut(s) 137, 274, 472, 476, 520, 1409
CviQI GTAC 5 cut(s) 307, 1210, 1438, 1660, 1865
DpnI GATC 7 cut(s) 72, 435, 774, 926, 933, 1467, 1629
DpnII GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
EaeI YGGCCR 2 cut(s) 231, 1008
Eam1104I CTCTTC 8 cut(s) 54, 570, 714, 903, 1377, 1389, 1693, 1737
EarI CTCTTC 8 cut(s) 54, 570, 714, 903, 1377, 1389, 1693, 1737
EciI GGCGGA 2 cut(s) 407, 1100
Eco130I CCWWGG 1 cut(s) 414
Eco57I CTGAAG 5 cut(s) 794, 1040, 1197, 1401, 1498
Eco88I CYCGRG 1 cut(s) 387
EcoRII CCWGG 3 cut(s) 36, 850, 1458
EcoT14I CCWWGG 1 cut(s) 414
EcoT22I ATGCAT 2 cut(s) 477, 1825
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 6 cut(s) 140, 277, 475, 479, 523, 1412
FaqI GGGAC 1 cut(s) 34
FatI CATG 6 cut(s) 136, 273, 471, 475, 519, 1408
FauI CCCGC 1 cut(s) 1762
FauNDI CATATG 2 cut(s) 1759, 1792
FbaI TGATCA 1 cut(s) 1465
FokI GGATG 1 cut(s) 868
FspBI CTAG 7 cut(s) 533, 543, 633, 956, 1620, 1655, 1882
FspI TGCGCA 2 cut(s) 1104, 1587
GlaI GCGC 6 cut(s) 717, 1025, 1104, 1291, 1587, 1716
GsuI CTGGAG 3 cut(s) 836, 1752, 1785
HaeIII GGCC 2 cut(s) 233, 1010
HapII CCGG 4 cut(s) 85, 93, 1600, 1663
HgaI GACGC 4 cut(s) 355, 548, 849, 878
HhaI GCGC 6 cut(s) 718, 1026, 1105, 1292, 1588, 1717
Hin1I GRCGYC 1 cut(s) 860
Hin1II CATG 6 cut(s) 140, 277, 475, 479, 523, 1412
Hin6I GCGC 6 cut(s) 716, 1024, 1103, 1290, 1586, 1715
HinP1I GCGC 6 cut(s) 716, 1024, 1103, 1290, 1586, 1715
HpaII CCGG 4 cut(s) 85, 93, 1600, 1663
HphI GGTGA 7 cut(s) 65, 469, 497, 763, 841, 1373, 1696
Hpy166II GTNNAC 2 cut(s) 309, 1364
Hpy188I TCNGA 9 cut(s) 169, 508, 553, 595, 868, 931, 1132, 1537, 1828
Hpy188III TCNNGA 5 cut(s) 119, 935, 1594, 1769, 1802
Hpy8I GTNNAC 2 cut(s) 309, 1364
Hpy99I CGWCG 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 571, 751
HpyCH4IV ACGT 2 cut(s) 588, 1863
HpySE526I ACGT 2 cut(s) 588, 1863
Hsp92I GRCGYC 1 cut(s) 860
Hsp92II CATG 6 cut(s) 140, 277, 475, 479, 523, 1412
HspAI GCGC 6 cut(s) 716, 1024, 1103, 1290, 1586, 1715
Ksp22I TGATCA 1 cut(s) 1465
Kzo9I GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
LguI GCTCTTC 4 cut(s) 570, 714, 1377, 1693
LmnI GCTCC 6 cut(s) 553, 595, 721, 783, 985, 1280
LweI GCATC 5 cut(s) 253, 795, 985, 1330, 1832
MaeI CTAG 7 cut(s) 533, 543, 633, 956, 1620, 1655, 1882
MaeII ACGT 2 cut(s) 588, 1863
MaeIII GTNAC 3 cut(s) 107, 1411, 1859
MalI GATC 7 cut(s) 72, 435, 774, 926, 933, 1467, 1629
MboI GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
MfeI CAATTG 1 cut(s) 1853
MflI RGATCY 1 cut(s) 924
MlsI TGGCCA 2 cut(s) 233, 1010
MluNI TGGCCA 2 cut(s) 233, 1010
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 4 cut(s) 192, 747, 1521, 1542
Mox20I TGGCCA 2 cut(s) 233, 1010
Mph1103I ATGCAT 2 cut(s) 477, 1825
MscI TGGCCA 2 cut(s) 233, 1010
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 2 cut(s) 233, 1010
MspA1I CMGCKG 6 cut(s) 250, 314, 439, 814, 892, 1175
MspCI CTTAAG 2 cut(s) 152, 1367
MspI CCGG 4 cut(s) 85, 93, 1600, 1663
MspR9I CCNGG 5 cut(s) 38, 85, 852, 1460, 1601
MunI CAATTG 1 cut(s) 1853
MvaI CCWGG 3 cut(s) 38, 852, 1460
MvnI CGCG 2 cut(s) 872, 1026
NciI CCSGG 2 cut(s) 85, 1601
NdeI CATATG 2 cut(s) 1759, 1792
NdeII GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
NlaIII CATG 6 cut(s) 140, 277, 475, 479, 523, 1412
NlaIV GGNNCC 1 cut(s) 1598
NmeAIII GCCGAG 2 cut(s) 1267, 1660
NmuCI GTSAC 1 cut(s) 1859
NsbI TGCGCA 2 cut(s) 1104, 1587
NsiI ATGCAT 2 cut(s) 477, 1825
NspI RCATGY 3 cut(s) 140, 277, 479
PaeI GCATGC 1 cut(s) 140
PasI CCCWGGG 1 cut(s) 851
PciSI GCTCTTC 4 cut(s) 570, 714, 1377, 1693
PfeI GAWTC 9 cut(s) 164, 410, 548, 970, 1127, 1219, 1403, 1763, 1796
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 36, 850, 1458
PspGI CCWGG 3 cut(s) 36, 850, 1458
PspN4I GGNNCC 1 cut(s) 1598
PsuI RGATCY 1 cut(s) 924
PvuII CAGCTG 5 cut(s) 250, 439, 814, 892, 1175
RsaI GTAC 5 cut(s) 308, 1211, 1439, 1661, 1866
RsaNI GTAC 5 cut(s) 307, 1210, 1438, 1660, 1865
RseI CAYNNNNRTG 1 cut(s) 803
SapI GCTCTTC 4 cut(s) 570, 714, 1377, 1693
Sau3AI GATC 7 cut(s) 70, 433, 772, 924, 931, 1465, 1627
ScaI AGTACT 1 cut(s) 1439
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 5 cut(s) 38, 85, 852, 1460, 1601
SfaNI GCATC 5 cut(s) 253, 795, 985, 1330, 1832
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 3 cut(s) 152, 287, 1367
SmoI CTYRAG 3 cut(s) 152, 287, 1367
SphI GCATGC 1 cut(s) 140
SsiI CCGC 7 cut(s) 314, 392, 536, 1085, 1521, 1755, 1850
SspI AATATT 3 cut(s) 145, 175, 734
SspMI CTAG 7 cut(s) 533, 543, 633, 956, 1620, 1655, 1882
StyD4I CCNGG 5 cut(s) 36, 83, 850, 1458, 1599
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 571, 751
TaiI ACGT 2 cut(s) 591, 1866
TaqI TCGA 5 cut(s) 345, 369, 408, 729, 948
TatI WGTACW 2 cut(s) 306, 1437
TfiI GAWTC 9 cut(s) 164, 410, 548, 970, 1127, 1219, 1403, 1763, 1796
TseFI GTSAC 1 cut(s) 1859
Tsp45I GTSAC 1 cut(s) 1859
Vha464I CTTAAG 2 cut(s) 152, 1367
XapI RAATTY 2 cut(s) 1470, 1877
XceI RCATGY 3 cut(s) 140, 277, 479
XspI CTAG 7 cut(s) 533, 543, 633, 956, 1620, 1655, 1882
ZrmI AGTACT 1 cut(s) 1439
Zsp2I ATGCAT 2 cut(s) 477, 1825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.