Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007768

Physical Location & Seq

Genomic Coordinates Forward (+)

19344363 .. 19348109

Gene Structure 3747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGGAGGAGAAGCGGCACCAGATGATGCAGAACCTGTTCGGAGATCAATCCGAAGAGGAAGAGGAAGAGGTCGATTCCGAGCACGAGTCCAATCCCCAGCCCAATTCTGATGAAGGAGAGGGCGCTGTGGAGGCTGAGGGTGAAGGTGAAGTAGAGAGTCAGGGGGAGGTGGAAGTGGAGAGTGATGTTGAGCAGCGTAATGCTGATCCTGATCCAGGAGAAAGTGAGGGCGAAAGAGAACAAAGTTCCCAAGAAGTAGACATTGGTGATCATAGAGAAGAAAGTGAAGGAAAATATACAGACACAGATGAAAAAGAAGAGTTAACCAGCCGGAGACGAAATGTGATTGAAAGTGGGTCTGAGAGATCTGAGGAAAACCATTACCCTGACAATGAAGACGAGGTTAATCAGGCCATAAGTCCAAGTAGATCCCCTGAGGAGGAGGAGGAACATACTAACATCGCACACTCTGCTGTTCGCAATGTATTTGGTGACTCTGATGAAGAAGAAGAAGAAGAGACAGATTTTCGGAATGACATTCAGCATGAATCAAATAGATCACCAATGGAAGAGGAAGGAAGCTATGGAAGGAGTCCAATACTAGAGGATGTAATGCCTGATGAAGATGCTAGATATGATTCAGAAGAGGACAATATGGAGGCTAAACCTAGAGATAAACCGGTTGGCCCCCCATTGGAGCTAGAGATTCCACTACGTCCACCTCCTGCTCGTCCAGAAAAGATGAACATGATCGATCTTTCAAATATCATGGGCATCGACCCCAAACCGTTTGATCCAAAGACATATGTGGAAGAAGATACGTTTGTGACAGATGAATCAGATCGATCTAAGAAGCGTATACGTTTGGAGAACAATATTGTGCGCTGGAGGAGGGTTAGAAATCCAGATGGCTCAACAACTAGTGAAAGCAACACACGCTTTGTGAGATGGTCTGATGGCAGTTTGCAGCTGTTGATTGGGAATGAAGTTCTAGACATATCTGTGCAAGAAGCACAGCATGATCAAGCGCACCTATTTCTCAGGCATGAAAAGGGAATCCTCCAATCACAAGGAAAAGTTCTGAAGAAGATGAGGTTCATGCCATCATCCTTGACATCAAATTCACATCGACTGCTGACTGCTCTGGTTGATTCTCGACATAAAAAAGTATACAAGGTCAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0008023 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0010048 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016591 GO:0016593 GO:0019219 GO:0019222 GO:0019899 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045309 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0080090 GO:0099122 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Leo1

Protein Analysis

397

Amino Acids

45.38

Weight (kDa)

4.48

Isoelectric Point (pI)

82.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Leo1	PF04004	251 - 391	5.3e-41	Leo1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61150 AT5G61150
fragaria_vesca	FvH4_5g14030 FvH4_5g14030 FvH4_5g14030
malus_domestica	MD06G1201400.v1.1 MD14G1210500.v1.1
prunus_persica	Prupe.5G203800_v2.0.a1 Prupe.5G203800_v2.0.a1 Prupe.5G203800_v2.0.a1 Prupe.5G203800_v2.0.a1
pyrus_communis	pycom06g17740 pycom14g17380
rosa_chinensis	RchiOBHm_Chr7g0182791
rosa_laevigata	RLG00000005099
rosa_multiflora	Rmu_sc0000014.1_g000027
rosa_roxburghii	Rroxscaffold_3G00270970
rosa_rugosa	Rorug06G0450800.1 Rorug06G0450900
rosa_samantha	Rh7AG054100 Rh7BG053600 Rh7CG055200 Rh7DG053400
rosa_wichuraiana	Rw7G004410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	3 cut(s)	261, 862, 1173
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	4 cut(s)	203, 209, 426, 791
AcsI	RAATTY	1 cut(s)	1123
AcuI	CTGAAG	1 cut(s)	1106
AfiI	CCNNNNNNNGG	3 cut(s)	218, 442, 697
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	2 cut(s)	353, 765
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	585, 703, 973
AluI	AGCT	3 cut(s)	585, 703, 973
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	331, 515
AlwI	GGATC	4 cut(s)	203, 209, 426, 791
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	414, 688
ApeKI	GCWGC	2 cut(s)	196, 970
ApoI	RAATTY	1 cut(s)	1123
AsiGI	ACCGGT	1 cut(s)	682
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	3 cut(s)	128, 888, 1033
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	5 cut(s)	155, 161, 281, 506, 555
AxyI	CCTNAGG	1 cut(s)	438
BaeI	ACNNNNGTAYC	2 cut(s)	813, 846
BanI	GGYRCC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	208, 982
BccI	CCATC	4 cut(s)	905, 945, 953, 1114
BciT130I	CCWGG	1 cut(s)	219
BclI	TGATCA	2 cut(s)	271, 1024
BcoDI	GTCTC	2 cut(s)	331, 515
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	6 cut(s)	605, 633, 672, 704, 924, 995
BfoI	RGCGCY	1 cut(s)	129
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	3 cut(s)	17, 197, 971
BlsI	GCNGC	3 cut(s)	18, 198, 972
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	20, 691
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	18, 619, 786
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	910
Bpu10I	CCTNAGC	1 cut(s)	138
Bsa29I	ATCGAT	2 cut(s)	756, 847
BsaBI	GATNNNNATC	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 442, 697
Bse118I	RCCGGY	1 cut(s)	682
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	2 cut(s)	756, 847
BseGI	GGATG	2 cut(s)	616, 1109
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	218, 442, 697
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	5 cut(s)	129, 354, 363, 429, 1057
BseRI	GAGGAG	5 cut(s)	23, 455, 458, 461, 907
BseXI	GCAGC	2 cut(s)	208, 982
BseYI	CCCAGC	1 cut(s)	99
BshFI	GGCC	2 cut(s)	416, 690
BshNI	GGYRCC	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	682
BshVI	ATCGAT	2 cut(s)	756, 847
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	334, 683
BslI	CCNNNNNNNGG	3 cut(s)	218, 442, 697
BsmAI	GTCTC	2 cut(s)	331, 515
BsmBI	CGTCTC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	416, 690
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	416, 690
BspCNI	CTCAG	5 cut(s)	130, 355, 364, 430, 1056
BspDI	ATCGAT	2 cut(s)	756, 847
BspLI	GGNNCC	2 cut(s)	20, 691
BspPI	GGATC	4 cut(s)	203, 209, 426, 791
BspT107I	GGYRCC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	682
BssNAI	GTATAC	2 cut(s)	863, 1174
BssSI	CACGAG	1 cut(s)	86
Bst1107I	GTATAC	2 cut(s)	863, 1174
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	792
Bst6I	CTCTTC	7 cut(s)	51, 57, 63, 315, 513, 567, 642
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstDEI	CTNAG	6 cut(s)	138, 363, 372, 438, 852, 1043
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	616, 1109
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	3 cut(s)	128, 888, 1033
BstMAI	GTCTC	2 cut(s)	331, 515
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 473, 939
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	208, 982
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	368, 431
BstYI	RGATCY	2 cut(s)	368, 431
BstZ17I	GTATAC	2 cut(s)	863, 1174
Bsu15I	ATCGAT	2 cut(s)	756, 847
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	416, 690
BsuTUI	ATCGAT	2 cut(s)	756, 847
BtgZI	GCGATG	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	616, 1109
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	3 cut(s)	128, 888, 1033
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	689
ClaI	ATCGAT	2 cut(s)	756, 847
CspAI	ACCGGT	1 cut(s)	682
CviAII	CATG	6 cut(s)	548, 751, 772, 1022, 1049, 1102
DdeI	CTNAG	6 cut(s)	138, 363, 372, 438, 852, 1043
Eam1104I	CTCTTC	7 cut(s)	51, 57, 63, 315, 513, 567, 642
EarI	CTCTTC	7 cut(s)	51, 57, 63, 315, 513, 567, 642
Eco57I	CTGAAG	1 cut(s)	1106
Eco81I	CCTNAGG	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	6 cut(s)	551, 754, 775, 1025, 1052, 1105
FatI	CATG	6 cut(s)	547, 750, 771, 1021, 1048, 1101
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	2 cut(s)	271, 1024
FblI	GTMKAC	3 cut(s)	261, 862, 1173
Fnu4HI	GCNGC	3 cut(s)	17, 197, 971
FokI	GGATG	2 cut(s)	623, 1096
Fsp4HI	GCNGC	3 cut(s)	17, 197, 971
FspBI	CTAG	6 cut(s)	605, 633, 672, 704, 924, 995
GlaI	GCGC	3 cut(s)	127, 887, 1032
GluI	GCNGC	3 cut(s)	17, 197, 971
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	910
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	416, 690
HapII	CCGG	2 cut(s)	334, 683
HhaI	GCGC	3 cut(s)	128, 888, 1033
Hin1II	CATG	6 cut(s)	551, 754, 775, 1025, 1052, 1105
Hin6I	GCGC	3 cut(s)	126, 886, 1031
HinP1I	GCGC	3 cut(s)	126, 886, 1031
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HpaI	GTTAAC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	334, 683
HphI	GGTGA	5 cut(s)	155, 161, 281, 506, 555
Hpy166II	GTNNAC	5 cut(s)	262, 327, 722, 863, 1174
Hpy188III	TCNNGA	6 cut(s)	212, 737, 908, 995, 1158, 1183
Hpy8I	GTNNAC	5 cut(s)	262, 327, 722, 863, 1174
HpyAV	CCTTC	5 cut(s)	110, 140, 284, 572, 585
HpyCH4III	ACNGT	1 cut(s)	792
HpyCH4IV	ACGT	3 cut(s)	718, 824, 865
HpyCH4V	TGCA	3 cut(s)	31, 970, 1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 473, 939
HpyF3I	CTNAG	6 cut(s)	138, 363, 372, 438, 852, 1043
HpySE526I	ACGT	3 cut(s)	718, 824, 865
Hsp92II	CATG	6 cut(s)	551, 754, 775, 1025, 1052, 1105
HspAI	GCGC	3 cut(s)	126, 886, 1031
Ksp22I	TGATCA	2 cut(s)	271, 1024
KspAI	GTTAAC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	700
Lsp1109I	GCAGC	2 cut(s)	208, 982
LweI	GCATC	3 cut(s)	18, 619, 786
MaeI	CTAG	6 cut(s)	605, 633, 672, 704, 924, 995
MaeII	ACGT	3 cut(s)	718, 824, 865
MaeIII	GTNAC	2 cut(s)	494, 829
MflI	RGATCY	2 cut(s)	368, 431
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	106, 1123
MlyI	GAGTC	4 cut(s)	98, 169, 491, 604
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	2 cut(s)	326, 408
MslI	CAYNNNNRTG	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	973
MspI	CCGG	2 cut(s)	334, 683
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	134, 473, 939
NdeI	CATATG	1 cut(s)	808
NlaIII	CATG	6 cut(s)	551, 754, 775, 1025, 1052, 1105
NlaIV	GGNNCC	2 cut(s)	20, 691
NmuCI	GTSAC	2 cut(s)	494, 829
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	7 cut(s)	77, 551, 641, 709, 839, 1059, 1154
PfoI	TCCNGGA	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	3 cut(s)	18, 198, 972
PleI	GAGTC	4 cut(s)	97, 168, 491, 603
PpsI	GAGTC	4 cut(s)	97, 168, 491, 603
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	20, 691
PspPI	GGNCC	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	368, 431
PvuII	CAGCTG	1 cut(s)	973
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	2 cut(s)	326, 408
SatI	GCNGC	3 cut(s)	17, 197, 971
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	4 cut(s)	98, 169, 491, 604
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	3 cut(s)	18, 619, 786
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	2 cut(s)	106, 1123
SsiI	CCGC	1 cut(s)	16
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	6 cut(s)	605, 633, 672, 704, 924, 995
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	792
TaiI	ACGT	3 cut(s)	721, 827, 868
TaqI	TCGA	6 cut(s)	75, 756, 780, 847, 1132, 1159
TasI	AATT	2 cut(s)	106, 1123
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	7 cut(s)	77, 551, 641, 709, 839, 1059, 1154
Tru1I	TTAA	2 cut(s)	326, 408
Tru9I	TTAA	2 cut(s)	326, 408
TseFI	GTSAC	2 cut(s)	494, 829
TseI	GCWGC	2 cut(s)	196, 970
Tsp45I	GTSAC	2 cut(s)	494, 829
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	1123
XbaI	TCTAGA	1 cut(s)	994
XmiI	GTMKAC	3 cut(s)	261, 862, 1173
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	6 cut(s)	605, 633, 672, 704, 924, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.