Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0017510

Physical Location & Seq

Genomic Coordinates Reverse (-)

19998132 .. 19998494

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTTCCAAGCTTCTTATTCCTCACCTTTTTAGTCTCATGCTTTGGCTCTCATTGCTCTTCTTGTCCGTCCACGGTTGGTTTCATCTCGTTTCCAAAAATAACAATAACCACATAAACCCTACGCAAGCAGCAGCATATCCTCTCAGCAGCTCCGATCGTCGTTACACTTTGAGCAACCGGAAAGTACTACTGGCTTCTAAATTCGACTTTTCCCCATTTGTCCACCGGCACCGGCATCATCAGAAGCATAATTCTCACAAACAAGTGCCTGTGCGGCCGGAGCCGGACCGAACGGAGATCGGCCGTGATGGTTCCGAAATGCGCATTGTTCCCACCGGTCCAAACCCGTTGCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.89

Weight (kDa)

10.67

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73965
fragaria_vesca	FvH4_5g12751
malus_domestica	MD06G1210600.v1.1 MD14G1221300.v1.1
prunus_persica	Prupe.5G216700_v2.0.a1
pyrus_communis	pycom06g18810 pycom14g18310
rosa_laevigata	RLG00000004969
rosa_roxburghii	Rroxscaffold_3G00269540
rosa_samantha	Rh7CG068400 Rh7DG067900
rosa_wichuraiana	Rw7G005590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	231
AciI	CCGC	1 cut(s)	277
AcoI	YGGCCR	2 cut(s)	278, 304
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	338
AluBI	AGCT	2 cut(s)	13, 153
AluI	AGCT	2 cut(s)	13, 153
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	278, 304
ApeKI	GCWGC	3 cut(s)	131, 134, 150
ApoI	RAATTY	1 cut(s)	203
AsiGI	ACCGGT	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	289, 341
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	289, 341
BanI	GGYRCC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	143, 146, 162
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	277
BisI	GCNGC	4 cut(s)	132, 135, 151, 278
BlsI	GCNGC	4 cut(s)	133, 136, 152, 279
BmcAI	AGTACT	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	289, 341
BmgT120I	GGNCC	2 cut(s)	289, 341
BmiI	GGNNCC	3 cut(s)	233, 285, 316
BmsI	GCATC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	2 cut(s)	180, 338
Bse118I	RCCGGY	3 cut(s)	228, 234, 338
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	198
BseX3I	CGGCCG	2 cut(s)	278, 304
BseXI	GCAGC	3 cut(s)	143, 146, 162
Bsh1285I	CGRYCG	3 cut(s)	160, 281, 307
BshFI	GGCC	2 cut(s)	280, 306
BshNI	GGYRCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	338
BsiEI	CGRYCG	3 cut(s)	160, 281, 307
BsiSI	CCGG	6 cut(s)	181, 229, 235, 281, 287, 339
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	280, 306
Bsp143I	GATC	2 cut(s)	157, 300
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	280, 306
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	233, 285, 316
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	53
BsrFI	RCCGGY	3 cut(s)	228, 234, 338
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	3 cut(s)	228, 234, 338
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	157, 300
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	160, 303
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	157, 300
BstMCI	CGRYCG	3 cut(s)	160, 281, 307
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 277, 283
BstV1I	GCAGC	3 cut(s)	143, 146, 162
BstZI	CGGCCG	2 cut(s)	278, 304
BsuRI	GGCC	2 cut(s)	280, 306
BtgI	CCRYGG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	3 cut(s)	228, 234, 338
Cfr13I	GGNCC	2 cut(s)	289, 341
CpoI	CGGWCCG	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	338
CspI	CGGWCCG	1 cut(s)	289
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	8 cut(s)	5, 13, 49, 153, 197, 280, 286, 306
CviKI_1	RGCY	8 cut(s)	5, 13, 49, 153, 197, 280, 286, 306
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	159, 302
DpnII	GATC	2 cut(s)	157, 300
EaeI	YGGCCR	2 cut(s)	278, 304
EagI	CGGCCG	2 cut(s)	278, 304
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EclXI	CGGCCG	2 cut(s)	278, 304
Eco47I	GGWCC	2 cut(s)	289, 341
Eco52I	CGGCCG	2 cut(s)	278, 304
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 116, 139, 252
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	132, 135, 151, 278
Fsp4HI	GCNGC	4 cut(s)	132, 135, 151, 278
FspAI	RTGCGCAY	1 cut(s)	326
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	4 cut(s)	132, 135, 151, 278
HaeIII	GGCC	2 cut(s)	280, 306
HapII	CCGG	6 cut(s)	181, 229, 235, 281, 287, 339
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	11
HpaII	CCGG	6 cut(s)	181, 229, 235, 281, 287, 339
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	73, 226
Hpy188I	TCNGA	3 cut(s)	157, 246, 319
Hpy8I	GTNNAC	2 cut(s)	73, 226
Hpy99I	CGWCG	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 277, 283
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	157, 300
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	158, 283
LpnPI	CCDG	8 cut(s)	179, 194, 242, 248, 285, 294, 300, 352
Lsp1109I	GCAGC	3 cut(s)	143, 146, 162
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	159, 302
MboI	GATC	2 cut(s)	157, 300
MboII	GAAGA	1 cut(s)	52
MluCI	AATT	2 cut(s)	203, 253
MnlI	CCTC	2 cut(s)	33, 153
MspI	CCGG	6 cut(s)	181, 229, 235, 281, 287, 339
MwoI	GCNNNNNNNGC	3 cut(s)	55, 277, 283
NdeII	GATC	2 cut(s)	157, 300
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	233, 285, 316
NsbI	TGCGCA	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	133, 136, 152, 279
Ple19I	CGATCG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	233, 285, 316
PspPI	GGNCC	2 cut(s)	289, 341
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
Rsr2I	CGGWCCG	1 cut(s)	289
RsrII	CGGWCCG	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	4 cut(s)	132, 135, 151, 278
Sau3AI	GATC	2 cut(s)	157, 300
Sau96I	GGNCC	2 cut(s)	289, 341
ScaI	AGTACT	1 cut(s)	189
SetI	ASST	3 cut(s)	15, 30, 155
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	2 cut(s)	289, 341
Sse9I	AATT	2 cut(s)	203, 253
SsiI	CCGC	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	203, 253
TatI	WGTACW	1 cut(s)	187
TauI	GCSGC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	131, 134, 150
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	2 cut(s)	58, 311
VpaK11BI	GGWCC	2 cut(s)	289, 341
XapI	RAATTY	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.