Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009787

Physical Location & Seq

Genomic Coordinates Reverse (-)

21691590 .. 21692245

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGGTTCCAGACACTCAGAGGCCGTATCAACTTGAAGAAGATGATAACGATCGTCATCATCATAACATAAATTCATCACCATCATCAGGAGATGCGGAGCTGGATTCCCAGCACCAGACTATGACAACGAACAAGAAGAAGAACAAGTACGTGGTGGTGGAAGACGATCACGATGACACGGCAAAGGAAGAATTACTGTCGGTGGAGAAGTTGTTCGAGAACCAACCAGTGCCGTCATGGCGGAAGCAGCTCACGTTCAGAGCCTTCTTCATAAGCTTCGTCCTCAGCATCCTCTTCAGCGTCATCGTCATGAAGCTCAACCTCACCACCGGTATTATCCCCTCTCTCAATGTCTCTGCGGGTCTCTTGGGCTTCTTCTTTGTCAGGACTTGGACCAAGTTCCTCGACAGGTGCGGCCTCCTCAACCAGCCCTTCACCAGGCAGGAGAACACCGTCATCCAGACCTGCGTCGTTGCCTCCTCCGGGATCGCCTTCAGCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

5.69

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48370 AT1G48370 AT3G17650 AT3G17650
fragaria_vesca	FvH4_5g18420
malus_domestica	MD14G1246000.v1.1
prunus_persica	Prupe.5G244000_v2.0.a1 Prupe.5G244000_v2.0.a1 Prupe.5G244300_v2.0.a1 Prupe.5G244300_v2.0.a1
pyrus_communis	pycom14g20690
rosa_chinensis	RchiOBHm_Chr7g0177061
rosa_laevigata	RLG00000005560
rosa_multiflora	Rmu_sc0005310.1_g000028
rosa_roxburghii	Rroxscaffold_3G00276140
rosa_rugosa	Rorug06G0403200
rosa_samantha	Rh7AG002800 Rh7BG003100 Rh7CG002400 Rh7DG002900
rosa_wichuraiana	Rw7G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
AciI	CCGC	4 cut(s)	98, 244, 362, 417
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	283, 481
AfaI	GTAC	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	502
AfiI	CCNNNNNNNGG	3 cut(s)	89, 441, 486
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	440
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	103, 253, 279, 319
AluI	AGCT	4 cut(s)	103, 253, 279, 319
Alw26I	GTCTC	2 cut(s)	361, 371
AlwI	GGATC	1 cut(s)	497
Aor51HI	AGCGCT	1 cut(s)	502
AoxI	GGCC	2 cut(s)	23, 418
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	73
AsiGI	ACCGGT	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	3 cut(s)	72, 319, 430
AvaII	GGWCC	1 cut(s)	396
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbsI	GAAGAC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	3 cut(s)	10, 198, 220
BciT130I	CCWGG	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	361, 371
BfoI	RGCGCY	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	251, 418
BlsI	GCNGC	2 cut(s)	252, 419
Bme1390I	CCNGG	2 cut(s)	442, 487
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	442, 487
BmsI	GCATC	2 cut(s)	85, 300
BoxI	GACNNNNGTC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	487
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	2 cut(s)	51, 57
BsaI	GGTCTC	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 441, 486
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	2 cut(s)	51, 57
BseBI	CCWGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	291, 459
BseJI	GATNNNNATC	2 cut(s)	51, 57
BseLI	CCNNNNNNNGG	3 cut(s)	89, 441, 486
BseMII	CTCAG	2 cut(s)	32, 301
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	413, 472
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	25, 420
BshTI	ACCGGT	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	333, 486
BslI	CCNNNNNNNGG	3 cut(s)	89, 441, 486
BsmAI	GTCTC	2 cut(s)	361, 371
BsnI	GGCC	2 cut(s)	25, 420
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	52, 169, 489
BspACI	CCGC	4 cut(s)	98, 244, 362, 417
BspANI	GGCC	2 cut(s)	25, 420
BspCNI	CTCAG	2 cut(s)	31, 300
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	3 cut(s)	52, 169, 489
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	201, 457
Bst6I	CTCTTC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	18, 287
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	291, 459
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	3 cut(s)	55, 172, 492
BstMAI	GTCTC	2 cut(s)	361, 371
BstMBI	GATC	3 cut(s)	52, 169, 489
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 250, 500
BstNI	CCWGG	1 cut(s)	442
BstPAI	GACNNNNGTC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	440, 485
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	25, 420
BtsCI	GGATG	2 cut(s)	291, 459
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	476
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	396
CseI	GACGC	2 cut(s)	292, 460
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	332
CviAII	CATG	2 cut(s)	240, 313
CviJI	RGCY	9 cut(s)	25, 103, 253, 266, 279, 319, 375, 420, 433
CviKI_1	RGCY	9 cut(s)	25, 103, 253, 266, 279, 319, 375, 420, 433
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	18, 287
DpnI	GATC	3 cut(s)	54, 171, 491
DpnII	GATC	3 cut(s)	52, 169, 489
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	396
Eco47III	AGCGCT	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	283, 481
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	440
FaeI	CATG	2 cut(s)	243, 316
FaiI	YATR	6 cut(s)	66, 71, 125, 241, 275, 314
FatI	CATG	2 cut(s)	239, 312
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	251, 418
FokI	GGATG	2 cut(s)	278, 446
Fsp4HI	GCNGC	2 cut(s)	251, 418
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	2 cut(s)	251, 418
GsaI	CCCAGC	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	25, 420
HapII	CCGG	2 cut(s)	333, 486
HgaI	GACGC	2 cut(s)	292, 460
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	2 cut(s)	243, 316
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	333, 486
HphI	GGTGA	3 cut(s)	72, 319, 430
Hpy188I	TCNGA	2 cut(s)	21, 263
Hpy188III	TCNNGA	7 cut(s)	11, 90, 173, 220, 313, 388, 463
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	277, 445, 505
HpyCH4III	ACNGT	2 cut(s)	201, 457
HpyCH4IV	ACGT	2 cut(s)	153, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 250, 500
HpyF3I	CTNAG	2 cut(s)	18, 287
HpySE526I	ACGT	2 cut(s)	153, 257
Hsp92II	CATG	2 cut(s)	243, 316
HspAI	GCGC	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	52, 169, 489
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	85, 300
MaeII	ACGT	2 cut(s)	153, 257
MalI	GATC	3 cut(s)	54, 171, 491
MboI	GATC	3 cut(s)	52, 169, 489
MboII	GAAGA	9 cut(s)	50, 53, 151, 154, 176, 203, 262, 289, 370
MluCI	AATT	2 cut(s)	73, 194
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	505
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	2 cut(s)	333, 486
MspR9I	CCNGG	2 cut(s)	442, 487
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	241, 250, 500
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	3 cut(s)	52, 169, 489
NlaIII	CATG	2 cut(s)	243, 316
NlaIV	GGNNCC	1 cut(s)	9
PagI	TCATGA	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	485
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	252, 419
Ple19I	CGATCG	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	154
PshAI	GACNNNNGTC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	396
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	2 cut(s)	251, 418
Sau3AI	GATC	3 cut(s)	52, 169, 489
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	442, 487
SetI	ASST	9 cut(s)	105, 156, 255, 260, 281, 321, 327, 416, 470
SfaNI	GCATC	2 cut(s)	85, 300
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	73, 194
SsiI	CCGC	4 cut(s)	98, 244, 362, 417
StyD4I	CCNGG	2 cut(s)	440, 485
TaaI	ACNGT	2 cut(s)	201, 457
TaiI	ACGT	2 cut(s)	156, 260
TaqI	TCGA	2 cut(s)	219, 408
TasI	AATT	2 cut(s)	73, 194
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	66, 262, 329
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.