Rorug06G0403200

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009787
Physical Location & Seq
Forward (+)
54746545 .. 54749517
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0403200.1

Sequence Viewer

Length: 1260 bp
ATGCCCCTCCTTCAAGTAGTAGCGCCGGCGCCAGTGAAGCTAAGACAGTGCAACTTATTAATCAAGAACAAAAGCAACAAGCCATTGCCCTTCCCTTCCCTGCAGCCACATTATCGTTATTATCATTCATCATCTTTAGGTGGCAGCATTGTTACTGCCAATGCAAATCCAAATCTAAATATTCCAAACTGTGATGATCGGCAAATCACAGTAACCAAAAGAAGAGGAGACCATGGTCGTAAAAAACATAACGGGGCACCGTTGTCCTATGCCTCACAATCACAATCACGATCAGAGAAGATCGATGTTAATATTGATGGACAATCCCTGAATAGATTTCAGATTGGCGGCCGCTTTTCTAAACAATGGGACGCTTTTCATCGCTTTTGTCGTCCTCATACTGTAATCGGCACTGTTATAGGTATATTATCGGTCTCTCTTCTTCCATTGGAACAAATTGGGGACTTGTCTCCTGCATTTTTTATAGGAATACTGAAGGCATTGGTTCCCTCGGTGTTAATGAACATCTATGTGGTGGGATTGAATCAAGTGTTTGATGTCGAAATAGACAAGGTTAACAAACCTGATCTCCCACTAGCTTCTGGTGAATTCTCTATGGGAACTGGGATCACAATCGTTTCCACAGTTTTGCTGATGAGTTTTGCTATGGGAGTTATGTTCAAGTCTCCACCTCTGTTCTCTGCCCTTGCCATTAGCTTTTTTCTTGGAAGTGCTTATTCCATTGAGCATCCGCTGCTCAGGTGGAAGAGACATGCAATTCTTGCTGCTGCTTGCATCCTAATTGTGAGAGCTGTCGTCGTCCAGCTTGCCTTCTTTGTACACATCCAGAAGTATGTGCTTGGTAGAGAAATTTCAATTACAAGACCATTGGTATTTGCAGTGGTTTTCATGTGCATCTTCTCCTCTGTTATTGCGTTGTTCAAGGATATACCTGATGTGGATGGTGATAGAGATTTTGGTATCCAATCTTTCAGTGTCAGCCTTGGGCAAGAAAAGGTGTATTGGGTTTGTGTAAATATGTTGTTACTGGCATATGGGGCAGCAGTGGTGATTGGAGCCTCTTCTTCCTTCCTACCAAGCAAGGTTTTCACTATAATAGGTCATGGTGCACTGGCTTCCCTTCTGTGGCTTCGAGCTCAATCAACAGATATAGCCAATAAAGCCTCCCTAACTTCTTTTTACATGTTCATTTGGAAGCTGTTTTACGCCGAGTATCTGCTTATTCCTTTTGTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

419

Amino Acids

46.33

Weight (kDa)

9.6

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 153 - 407 9.6e-38 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 256
AciI CCGC 3 cut(s) 348, 352, 752
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 2 cut(s) 608, 870
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 2 cut(s) 840, 1254
AfiI CCNNNNNNNGG 1 cut(s) 1146
AflIII ACRYGT 1 cut(s) 1203
AgsI TTSAA 5 cut(s) 14, 544, 682, 876, 943
AluBI AGCT 7 cut(s) 40, 599, 717, 812, 826, 1157, 1219
AluI AGCT 7 cut(s) 40, 599, 717, 812, 826, 1157, 1219
Alw21I GWGCWC 2 cut(s) 1132, 1159
Alw26I GTCTC 5 cut(s) 222, 439, 474, 690, 763
Alw44I GTGCAC 1 cut(s) 1128
AlwI GGATC 1 cut(s) 635
AoxI GGCC 1 cut(s) 349
ApaLI GTGCAC 1 cut(s) 1128
ApeKI GCWGC 6 cut(s) 103, 144, 754, 785, 788, 1061
ApoI RAATTY 2 cut(s) 608, 870
AseI ATTAAT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 25, 31
AsuHPI GGTGA 3 cut(s) 617, 977, 1081
BaeGI GKGCMC 2 cut(s) 259, 1132
BanI GGYRCC 2 cut(s) 28, 256
BanII GRGCYC 1 cut(s) 1159
BarI GAAGNNNNNNTAC 2 cut(s) 1208, 1240
Bbv12I GWGCWC 2 cut(s) 1132, 1159
BbvI GCAGC 6 cut(s) 115, 156, 741, 772, 775, 1073
BccI CCATC 2 cut(s) 311, 956
BciVI GTATCC 1 cut(s) 992
BcoDI GTCTC 5 cut(s) 222, 439, 474, 690, 763
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 2 cut(s) 26, 32
BfuI GTATCC 1 cut(s) 992
BisI GCNGC 8 cut(s) 104, 145, 349, 352, 755, 786, 789, 1062
BlsI GCNGC 8 cut(s) 105, 146, 350, 353, 756, 787, 790, 1063
BmiI GGNNCC 4 cut(s) 30, 258, 507, 1078
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 3 cut(s) 757, 804, 924
BmuI ACTGGG 1 cut(s) 633
BoxI GACNNNNGTC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 758
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 2 cut(s) 222, 439
BsaJI CCNNGG 3 cut(s) 232, 510, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 1146
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 4 cut(s) 32, 628, 1053, 1137
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 632
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 232, 510, 1003
BseGI GGATG 4 cut(s) 748, 795, 843, 967
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 1 cut(s) 1146
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 772
BseNI ACTGG 4 cut(s) 32, 628, 1053, 1137
BseRI GAGGAG 2 cut(s) 240, 913
BseSI GKGCMC 2 cut(s) 259, 1132
BseX3I CGGCCG 1 cut(s) 349
BseXI GCAGC 6 cut(s) 115, 156, 741, 772, 775, 1073
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 2 cut(s) 28, 256
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 1132, 1159
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 2 cut(s) 383, 476
BslI CCNNNNNNNGG 1 cut(s) 1146
BsmAI GTCTC 5 cut(s) 222, 439, 474, 690, 763
BsmFI GGGAC 2 cut(s) 383, 476
BsnI GGCC 1 cut(s) 351
Bso31I GGTCTC 2 cut(s) 222, 439
Bsp1286I GDGCHC 3 cut(s) 259, 1132, 1159
Bsp1407I TGTACA 1 cut(s) 838
Bsp143I GATC 5 cut(s) 196, 290, 300, 586, 627
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 3 cut(s) 348, 352, 752
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 771
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 30, 258, 507, 1078
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 635
BspT107I GGYRCC 2 cut(s) 28, 256
BspTNI GGTCTC 2 cut(s) 222, 439
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 838
BsrI ACTGG 4 cut(s) 32, 628, 1053, 1137
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 232, 510, 1003
BssMI GATC 5 cut(s) 196, 290, 300, 586, 627
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 232, 1003
Bst4CI ACNGT 7 cut(s) 48, 191, 211, 261, 403, 415, 646
Bst6I CTCTTC 4 cut(s) 217, 444, 761, 1087
BstACI GRCGYC 1 cut(s) 29
BstAPI GCANNNNNTGC 2 cut(s) 754, 782
BstAUI TGTACA 1 cut(s) 838
BstC8I GCNNGC 3 cut(s) 27, 793, 828
BstDEI CTNAG 2 cut(s) 41, 758
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 748, 795, 843, 967
BstH2I RGCGCY 2 cut(s) 26, 32
BstHHI GCGC 2 cut(s) 25, 31
BstKTI GATC 5 cut(s) 199, 293, 303, 589, 630
BstMAI GTCTC 5 cut(s) 222, 439, 474, 690, 763
BstMBI GATC 5 cut(s) 196, 290, 300, 586, 627
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 5 cut(s) 37, 754, 782, 1058, 1181
BstNSI RCATGY 2 cut(s) 776, 1207
BstPAI GACNNNNGTC 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 2 cut(s) 259, 1132
BstV1I GCAGC 6 cut(s) 115, 156, 741, 772, 775, 1073
BstZI CGGCCG 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 303
BsuI GTATCC 1 cut(s) 992
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 4 cut(s) 748, 795, 843, 967
BtsI GCAGTG 2 cut(s) 906, 1071
BtsIMutI CAGTG 7 cut(s) 39, 53, 411, 906, 1000, 1071, 1130
Cac8I GCNNGC 3 cut(s) 27, 793, 828
CciNI GCGGCCGC 1 cut(s) 349
CfoI GCGC 2 cut(s) 25, 31
Cfr10I RCCGGY 1 cut(s) 25
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 839, 1253
CviAII CATG 5 cut(s) 233, 773, 910, 1124, 1204
CviQI GTAC 2 cut(s) 839, 1253
DdeI CTNAG 2 cut(s) 41, 758
DinI GGCGCC 1 cut(s) 30
DpnI GATC 5 cut(s) 198, 292, 302, 588, 629
DpnII GATC 5 cut(s) 196, 290, 300, 586, 627
EaeI YGGCCR 1 cut(s) 349
EagI CGGCCG 1 cut(s) 349
Eam1104I CTCTTC 4 cut(s) 217, 444, 761, 1087
EarI CTCTTC 4 cut(s) 217, 444, 761, 1087
Ecl136II GAGCTC 1 cut(s) 1157
EclXI CGGCCG 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 232, 1003
Eco24I GRGCYC 1 cut(s) 1159
Eco31I GGTCTC 2 cut(s) 222, 439
Eco52I CGGCCG 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 1157
Eco57I CTGAAG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 1157
EcoRI GAATTC 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 232, 1003
EcoT38I GRGCYC 1 cut(s) 1159
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 232, 1003
FaeI CATG 5 cut(s) 236, 776, 913, 1127, 1207
FaqI GGGAC 2 cut(s) 383, 476
FatI CATG 5 cut(s) 232, 772, 909, 1123, 1203
FauNDI CATATG 1 cut(s) 1054
Fnu4HI GCNGC 8 cut(s) 104, 145, 349, 352, 755, 786, 789, 1062
FokI GGATG 4 cut(s) 735, 782, 830, 974
FriOI GRGCYC 1 cut(s) 1159
Fsp4HI GCNGC 8 cut(s) 104, 145, 349, 352, 755, 786, 789, 1062
FspBI CTAG 1 cut(s) 596
GlaI GCGC 2 cut(s) 24, 30
GluI GCNGC 8 cut(s) 104, 145, 349, 352, 755, 786, 789, 1062
HaeII RGCGCY 2 cut(s) 26, 32
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 380
HhaI GCGC 2 cut(s) 25, 31
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 5 cut(s) 236, 776, 913, 1127, 1207
Hin6I GCGC 2 cut(s) 23, 29
HinP1I GCGC 2 cut(s) 23, 29
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 1 cut(s) 544
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 617, 977, 1081
Hpy166II GTNNAC 3 cut(s) 577, 841, 1130
Hpy188I TCNGA 2 cut(s) 295, 342
Hpy188III TCNNGA 3 cut(s) 64, 288, 847
Hpy8I GTNNAC 3 cut(s) 577, 841, 1130
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 7 cut(s) 20, 100, 105, 490, 841, 1099, 1151
HpyCH4III ACNGT 7 cut(s) 48, 191, 211, 261, 403, 415, 646
HpyCH4IV ACGT 1 cut(s) 1255
HpyCH4V TGCA 9 cut(s) 51, 103, 164, 476, 776, 795, 899, 915, 1130
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 754, 782, 1058, 1181
HpyF3I CTNAG 2 cut(s) 41, 758
HpySE526I ACGT 1 cut(s) 1255
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 5 cut(s) 236, 776, 913, 1127, 1207
HspAI GCGC 2 cut(s) 23, 29
KasI GGCGCC 1 cut(s) 28
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 5 cut(s) 196, 290, 300, 586, 627
LmnI GCTCC 1 cut(s) 1076
Lsp1109I GCAGC 6 cut(s) 115, 156, 741, 772, 775, 1073
LweI GCATC 3 cut(s) 757, 804, 924
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 1255
MaeIII GTNAC 3 cut(s) 151, 211, 1044
MalI GATC 5 cut(s) 198, 292, 302, 588, 629
MboI GATC 5 cut(s) 196, 290, 300, 586, 627
MboII GAAGA 8 cut(s) 234, 310, 431, 434, 778, 910, 1074, 1077
MhlI GDGCHC 3 cut(s) 259, 1132, 1159
MluCI AATT 6 cut(s) 456, 608, 777, 801, 870, 876
Mly113I GGCGCC 1 cut(s) 29
MnlI CCTC 9 cut(s) 17, 218, 283, 405, 520, 702, 934, 1090, 1195
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 4 cut(s) 59, 309, 518, 576
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 37, 754, 782, 1058, 1181
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 1054
NdeII GATC 5 cut(s) 196, 290, 300, 586, 627
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 5 cut(s) 236, 776, 913, 1127, 1207
NlaIV GGNNCC 4 cut(s) 30, 258, 507, 1078
NmeAIII GCCGAG 1 cut(s) 1255
NotI GCGGCCGC 1 cut(s) 349
NspI RCATGY 2 cut(s) 776, 1207
PciI ACATGT 1 cut(s) 1203
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 8 cut(s) 105, 146, 350, 353, 756, 787, 790, 1063
PluTI GGCGCC 1 cut(s) 32
PscI ACATGT 1 cut(s) 1203
PshAI GACNNNNGTC 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 1159
PspN4I GGNNCC 4 cut(s) 30, 258, 507, 1078
PstI CTGCAG 1 cut(s) 105
RsaI GTAC 2 cut(s) 840, 1254
RsaNI GTAC 2 cut(s) 839, 1253
RseI CAYNNNNRTG 1 cut(s) 530
SacI GAGCTC 1 cut(s) 1159
SaqAI TTAA 4 cut(s) 59, 309, 518, 576
SatI GCNGC 8 cut(s) 104, 145, 349, 352, 755, 786, 789, 1062
Sau3AI GATC 5 cut(s) 196, 290, 300, 586, 627
SduI GDGCHC 3 cut(s) 259, 1132, 1159
SfaNI GCATC 3 cut(s) 757, 804, 924
SfcI CTRYAG 1 cut(s) 101
SfoI GGCGCC 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 530
Sse9I AATT 6 cut(s) 456, 608, 777, 801, 870, 876
SsiI CCGC 3 cut(s) 348, 352, 752
SspDI GGCGCC 1 cut(s) 28
SspI AATATT 2 cut(s) 181, 313
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 1159
StyI CCWWGG 2 cut(s) 232, 1003
TaaI ACNGT 7 cut(s) 48, 191, 211, 261, 403, 415, 646
TaiI ACGT 1 cut(s) 1258
TaqI TCGA 3 cut(s) 303, 561, 1153
TaqII GACCGA 1 cut(s) 421
TasI AATT 6 cut(s) 456, 608, 777, 801, 870, 876
TatI WGTACW 1 cut(s) 838
TauI GCSGC 2 cut(s) 351, 354
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 4 cut(s) 59, 309, 518, 576
Tru9I TTAA 4 cut(s) 59, 309, 518, 576
TscAI CASTG 7 cut(s) 39, 53, 418, 906, 1000, 1071, 1137
TseI GCWGC 6 cut(s) 103, 144, 754, 785, 788, 1061
TspDTI ATGAA 5 cut(s) 117, 368, 536, 898, 1198
TspRI CASTG 7 cut(s) 39, 53, 418, 906, 1000, 1071, 1137
VneI GTGCAC 1 cut(s) 1128
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 608, 870
XceI RCATGY 2 cut(s) 776, 1207
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.