pycom14g20690

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009787
Physical Location & Seq
Reverse (-)
21691590 .. 21692245
656 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
ATGGGGGTTCCAGACACTCAGAGGCCGTATCAACTTGAAGAAGATGATAACGATCGTCATCATCATAACATAAATTCATCACCATCATCAGGAGATGCGGAGCTGGATTCCCAGCACCAGACTATGACAACGAACAAGAAGAAGAACAAGTACGTGGTGGTGGAAGACGATCACGATGACACGGCAAAGGAAGAATTACTGTCGGTGGAGAAGTTGTTCGAGAACCAACCAGTGCCGTCATGGCGGAAGCAGCTCACGTTCAGAGCCTTCTTCATAAGCTTCGTCCTCAGCATCCTCTTCAGCGTCATCGTCATGAAGCTCAACCTCACCACCGGTATTATCCCCTCTCTCAATGTCTCTGCGGGTCTCTTGGGCTTCTTCTTTGTCAGGACTTGGACCAAGTTCCTCGACAGGTGCGGCCTCCTCAACCAGCCCTTCACCAGGCAGGAGAACACCGTCATCCAGACCTGCGTCGTTGCCTCCTCCGGGATCGCCTTCAGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

5.69

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 84 - 167 1.2e-22 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AciI CCGC 4 cut(s) 98, 244, 362, 417
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 283, 481
AfaI GTAC 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 502
AfiI CCNNNNNNNGG 3 cut(s) 89, 441, 486
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 1 cut(s) 440
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 103, 253, 279, 319
AluI AGCT 4 cut(s) 103, 253, 279, 319
Alw26I GTCTC 2 cut(s) 361, 371
AlwI GGATC 1 cut(s) 497
Aor51HI AGCGCT 1 cut(s) 502
AoxI GGCC 2 cut(s) 23, 418
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 72, 319, 430
AvaII GGWCC 1 cut(s) 396
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbsI GAAGAC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 91
BceAI ACGGC 3 cut(s) 10, 198, 220
BciT130I CCWGG 1 cut(s) 442
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 361, 371
BfoI RGCGCY 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 241
BisI GCNGC 2 cut(s) 251, 418
BlsI GCNGC 2 cut(s) 252, 419
Bme1390I CCNGG 2 cut(s) 442, 487
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 442, 487
BmsI GCATC 2 cut(s) 85, 300
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 487
BsaAI YACGTR 1 cut(s) 154
BsaBI GATNNNNATC 2 cut(s) 51, 57
BsaI GGTCTC 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 441, 486
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 230
Bse8I GATNNNNATC 2 cut(s) 51, 57
BseBI CCWGG 1 cut(s) 442
BseGI GGATG 2 cut(s) 291, 459
BseJI GATNNNNATC 2 cut(s) 51, 57
BseLI CCNNNNNNNGG 3 cut(s) 89, 441, 486
BseMII CTCAG 2 cut(s) 32, 301
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 2 cut(s) 413, 472
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 25, 420
BshTI ACCGGT 1 cut(s) 332
BsiEI CGRYCG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 333, 486
BslI CCNNNNNNNGG 3 cut(s) 89, 441, 486
BsmAI GTCTC 2 cut(s) 361, 371
BsnI GGCC 2 cut(s) 25, 420
Bso31I GGTCTC 1 cut(s) 371
Bsp143I GATC 3 cut(s) 52, 169, 489
BspACI CCGC 4 cut(s) 98, 244, 362, 417
BspANI GGCC 2 cut(s) 25, 420
BspCNI CTCAG 2 cut(s) 31, 300
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 332
BssMI GATC 3 cut(s) 52, 169, 489
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 2 cut(s) 201, 457
Bst6I CTCTTC 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 18, 287
BstENI CCTNNNNNAGG 1 cut(s) 439
BstF5I GGATG 2 cut(s) 291, 459
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 3 cut(s) 55, 172, 492
BstMAI GTCTC 2 cut(s) 361, 371
BstMBI GATC 3 cut(s) 52, 169, 489
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 241, 250, 500
BstNI CCWGG 1 cut(s) 442
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 440, 485
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 25, 420
BtsCI GGATG 2 cut(s) 291, 459
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 476
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 396
CseI GACGC 2 cut(s) 292, 460
Csp6I GTAC 1 cut(s) 151
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 2 cut(s) 240, 313
CviJI RGCY 9 cut(s) 25, 103, 253, 266, 279, 319, 375, 420, 433
CviKI_1 RGCY 9 cut(s) 25, 103, 253, 266, 279, 319, 375, 420, 433
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 18, 287
DpnI GATC 3 cut(s) 54, 171, 491
DpnII GATC 3 cut(s) 52, 169, 489
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 396
Eco47III AGCGCT 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 283, 481
EcoNI CCTNNNNNAGG 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 440
FaeI CATG 2 cut(s) 243, 316
FaiI YATR 6 cut(s) 66, 71, 125, 241, 275, 314
FatI CATG 2 cut(s) 239, 312
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 251, 418
FokI GGATG 2 cut(s) 278, 446
Fsp4HI GCNGC 2 cut(s) 251, 418
GlaI GCGC 1 cut(s) 502
GluI GCNGC 2 cut(s) 251, 418
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 2 cut(s) 25, 420
HapII CCGG 2 cut(s) 333, 486
HgaI GACGC 2 cut(s) 292, 460
HhaI GCGC 1 cut(s) 503
Hin1II CATG 2 cut(s) 243, 316
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 1 cut(s) 107
HpaII CCGG 2 cut(s) 333, 486
HphI GGTGA 3 cut(s) 72, 319, 430
Hpy188I TCNGA 2 cut(s) 21, 263
Hpy188III TCNNGA 7 cut(s) 11, 90, 173, 220, 313, 388, 463
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 3 cut(s) 277, 445, 505
HpyCH4III ACNGT 2 cut(s) 201, 457
HpyCH4IV ACGT 2 cut(s) 153, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 250, 500
HpyF3I CTNAG 2 cut(s) 18, 287
HpySE526I ACGT 2 cut(s) 153, 257
Hsp92II CATG 2 cut(s) 243, 316
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 3 cut(s) 52, 169, 489
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 2 cut(s) 85, 300
MaeII ACGT 2 cut(s) 153, 257
MalI GATC 3 cut(s) 54, 171, 491
MboI GATC 3 cut(s) 52, 169, 489
MboII GAAGA 9 cut(s) 50, 53, 151, 154, 176, 203, 262, 289, 370
MluCI AATT 2 cut(s) 73, 194
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 505
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 2 cut(s) 333, 486
MspR9I CCNGG 2 cut(s) 442, 487
MvaI CCWGG 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 241, 250, 500
NciI CCSGG 1 cut(s) 487
NdeII GATC 3 cut(s) 52, 169, 489
NlaIII CATG 2 cut(s) 243, 316
NlaIV GGNNCC 1 cut(s) 9
PagI TCATGA 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 485
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 2 cut(s) 252, 419
Ple19I CGATCG 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 154
PshAI GACNNNNGTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 396
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 505
SatI GCNGC 2 cut(s) 251, 418
Sau3AI GATC 3 cut(s) 52, 169, 489
Sau96I GGNCC 1 cut(s) 396
ScrFI CCNGG 2 cut(s) 442, 487
SetI ASST 9 cut(s) 105, 156, 255, 260, 281, 321, 327, 416, 470
SfaNI GCATC 2 cut(s) 85, 300
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 2 cut(s) 73, 194
SsiI CCGC 4 cut(s) 98, 244, 362, 417
StyD4I CCNGG 2 cut(s) 440, 485
TaaI ACNGT 2 cut(s) 201, 457
TaiI ACGT 2 cut(s) 156, 260
TaqI TCGA 2 cut(s) 219, 408
TasI AATT 2 cut(s) 73, 194
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 505
Tru9I TTAA 1 cut(s) 505
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 66, 262, 329
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 439
XapI RAATTY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.