pycom15g01110

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013830
Physical Location & Seq
Reverse (-)
595017 .. 596226
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGATCCGATTCATACTGCTACAGAACCGGCAGGGAAAGACCCGATTAGCCAAGTACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTCGAATATGAGGTTCATCGTTTGGTGGTCAACAGAGATCCCAAGTTCACAAATTTCGTCGAGTTCCGTACACACAAGGTTATATACAGGAGATATGCAGGGTTATTTTTCTCACTGTGTGTTGATATAACTGACAATGAGCTGGCATACTTGGAATGCATTCATCTGTTCGTCGAAATTTTGGATCATTTTTTCAGCAATGTTTGTGAGCTCGATTTGGTCTTTAACTTTCATAAGGTCTATCTGATACTGGATGAGTTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAGAAGGCAATAATAGAGAGAATGGGGGAACTCGAAAAACTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

143

Amino Acids

17.05

Weight (kDa)

5.88

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 141 3.2e-54 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47830
fragaria_vesca FvH4_2g38510
malus_domestica MD08G1013400.v1.1 MD15G1012800.v1.1
prunus_persica Prupe.1G365900_v2.0.a1
pyrus_communis pycom08g01180 pycom15g01110
rosa_chinensis RchiOBHm_Chr6g0302791
rosa_laevigata RLG00000011137
rosa_multiflora Rmu_ssc0000460.1_g000005
rosa_roxburghii Rroxscaffold_7G00165320
rosa_rugosa Rorug06G0317000
rosa_samantha Rh6AG430400 Rh6BG472200 Rh6CG442900 Rh6DG429600
rosa_wichuraiana Rw6G037280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 122, 282
AcsI RAATTY 2 cut(s) 142, 267
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 2 cut(s) 56, 160
AluBI AGCT 3 cut(s) 232, 301, 367
AluI AGCT 3 cut(s) 232, 301, 367
Alw21I GWGCWC 2 cut(s) 303, 369
AlwI GGATC 2 cut(s) 122, 282
Ama87I CYCGRG 1 cut(s) 68
ApoI RAATTY 2 cut(s) 142, 267
Asp700I GAANNNNTTC 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 68
BanII GRGCYC 2 cut(s) 303, 369
Bbv12I GWGCWC 2 cut(s) 303, 369
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 20
BmcAI AGTACT 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 381
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 295
BseGI GGATG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 303, 369
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 28
BsmI GAATGC 2 cut(s) 249, 251
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 303, 369
Bsp143I GATC 3 cut(s) 3, 127, 274
BspPI GGATC 2 cut(s) 122, 282
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 3 cut(s) 3, 127, 274
Bst4CI ACNGT 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 234
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 3 cut(s) 6, 130, 277
BstMBI GATC 3 cut(s) 3, 127, 274
BstSFI CTRYAG 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 27
Csp6I GTAC 2 cut(s) 55, 159
CviJI RGCY 4 cut(s) 50, 232, 301, 367
CviKI_1 RGCY 4 cut(s) 50, 232, 301, 367
CviQI GTAC 2 cut(s) 55, 159
DpnI GATC 3 cut(s) 5, 129, 276
DpnII GATC 3 cut(s) 3, 127, 274
DraIII CACNNNGTG 1 cut(s) 209
Ecl136II GAGCTC 2 cut(s) 301, 367
Eco24I GRGCYC 2 cut(s) 303, 369
Eco53kI GAGCTC 2 cut(s) 301, 367
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 2 cut(s) 301, 367
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 2 cut(s) 303, 369
FaiI YATR 8 cut(s) 14, 99, 173, 175, 186, 218, 238, 324
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 2 cut(s) 303, 369
FspBI CTAG 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 381
HapII CCGG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 2 cut(s) 9, 74
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 3 cut(s) 121, 138, 161
Hpy188I TCNGA 3 cut(s) 8, 79, 336
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 3 cut(s) 121, 138, 161
Hpy99I CGWCG 2 cut(s) 152, 266
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 188, 249
HpySE526I ACGT 1 cut(s) 60
Kzo9I GATC 3 cut(s) 3, 127, 274
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 7 cut(s) 17, 41, 163, 174, 218, 326, 345
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 60
MalI GATC 3 cut(s) 5, 129, 276
MboI GATC 3 cut(s) 3, 127, 274
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 303, 369
MluCI AATT 2 cut(s) 142, 267
MnlI CCTC 3 cut(s) 64, 75, 94
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 2 cut(s) 249, 251
NdeII GATC 3 cut(s) 3, 127, 274
NsiI ATGCAT 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 75
PctI GAATGC 2 cut(s) 249, 251
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 9, 74
Psp124BI GAGCTC 2 cut(s) 303, 369
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 2 cut(s) 56, 160
RsaNI GTAC 2 cut(s) 55, 159
SacI GAGCTC 2 cut(s) 303, 369
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 3 cut(s) 3, 127, 274
ScaI AGTACT 1 cut(s) 56
SduI GDGCHC 2 cut(s) 303, 369
SetI ASST 8 cut(s) 63, 93, 105, 171, 234, 303, 330, 369
SfcI CTRYAG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 142, 267
SspMI CTAG 1 cut(s) 422
SstI GAGCTC 2 cut(s) 303, 369
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 63
TaqI TCGA 6 cut(s) 69, 93, 150, 264, 303, 414
TasI AATT 2 cut(s) 142, 267
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 2 cut(s) 9, 74
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 4 cut(s) 95, 242, 311, 340
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 210
XapI RAATTY 2 cut(s) 142, 267
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.