Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003145

Physical Location & Seq

Genomic Coordinates Reverse (-)

1365571 .. 1368264

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTTGCCCAACTGGTTGACTTTAAAGACAAAAATTCGGGAAAATTTCCAGATAGTGTTGATTACGCTGTTATGTACAAGGATGTTCGAGCTGCTGTTGATTTGTGCCACCGTGATGGAACTTTAAAGCAAATGGTGGCAAATGACCCTCAGCGGTACATTAATGAAGATACCTCCATAGTTCCTATGCTCAAAATGCTGAGAGATTCCGGCCGTGCTACATTCCTGGTGACAAACAGTTTATGGGACTATACAAACATTGTAATGAATTTCCTTTGTGAGTCGCGCACAGTGGATGGTAGTAGAAAATGCAATTTCGACTGGCTTAAATACTTCGATGTTGTCATCACTGGCAGTGCAAAGCCAAGCTTCTTTCATGATGGTAACCGTGCTAATCTGTTTGAGGTGGATCTCGAGTCGGGGATGCTACATAATACTGATAATGGTTCTCCTATGGCTCAGGTTGGAAGTTCTTCACCTGCACCTACATTATCATTGAACGGACTGAAGAAGGGTTGCAGAGTTTTTCAGGGAGGCAGCGTTGGGCATCTTCATAAACTGCTTTCAATTGAGTCAAGTTCACAGGTTCTTTATGTTGGTGACCATATATACGGAGATATTTTGCGCAGCAAAAAGGTTCTTGGGTGGAGAACAATGCTTGTTGTTCCAGAGCTAGAAAGGGAGGTTGAACTCCTATGGGAATTGAGAGATACCCGCAAGCAACTTCAATTATTGAGGAATGAGCGTGATCTGATTGAAGACAAAATACATCATCTAAAGTGGTCTCTCAAATATGACGATATCAGTGCTGAGGAGAAGCAAAAATTATCTTCTGAATACAATGCGTTGGAGTTCCAAAGAGACCAAGTGCGGTTCATCCATCAACAGTCTCAACGTGAATGTCACCAAATGTTTCACAAGATTTGGGGACAACTCATGAAGACTGGCTATCAGAACTCTCGCTTTGCCCATCAGGTTGAAAGATTTGCCTGCCTTTATGCTAGCCAAGTTTCCAACTTGAGCCTCTATTCTCCTGACAAATACTACAGGCCGAGTGAAGACTACATGCCCCATGAATTCGATATTCTTCCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_nucleotid

Protein Analysis

366

Amino Acids

42.3

Weight (kDa)

6.5

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75210 AT1G75210 AT1G75210
fragaria_vesca	FvH4_2g39770 FvH4_2g39770 FvH4_2g39770
malus_domestica	MD08G1031400.v1.1 MD15G1027200.v1.1
prunus_persica	Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1
pyrus_communis	pycom08g02480 pycom15g02320
rosa_chinensis	RchiOBHm_Chr6g0301091
rosa_laevigata	RLG00000011279
rosa_multiflora	Rmu_sc0003168.1_g000017
rosa_roxburghii	Rroxscaffold_172G00445550 Rroxscaffold_7G00167170
rosa_rugosa	Rorug06G0300700 Rorug06G0300700 Rorug06G0300800 Rorug06G0300900 Rorug06G0301000 Rorug06G0301100 Rorug06G0301200
rosa_samantha	Rh6AG414600 Rh6BG421600 Rh6CG429200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
Acc16I	TGCGCA	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	487
AccII	CGCG	1 cut(s)	286
AciI	CCGC	3 cut(s)	154, 715, 871
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	4 cut(s)	34, 44, 268, 1076
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	2 cut(s)	77, 158
AgsI	TTSAA	6 cut(s)	499, 567, 689, 728, 758, 980
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	92, 369, 673
AluI	AGCT	3 cut(s)	92, 369, 673
Alw26I	GTCTC	3 cut(s)	789, 855, 894
AlwI	GGATC	1 cut(s)	417
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	211, 1049
ApeKI	GCWGC	3 cut(s)	92, 537, 627
ApoI	RAATTY	4 cut(s)	34, 44, 268, 1076
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	288, 627
AsuHPI	GGTGA	4 cut(s)	241, 468, 611, 896
AsuNHI	GCTAGC	1 cut(s)	1001
AvaI	CYCGRG	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
BbsI	GAAGAC	3 cut(s)	765, 947, 1065
BbvCI	CCTCAGC	2 cut(s)	150, 810
BbvI	GCAGC	3 cut(s)	79, 549, 639
BccI	CCATC	5 cut(s)	110, 290, 374, 888, 978
BceAI	ACGGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	3 cut(s)	789, 855, 894
BfaI	CTAG	2 cut(s)	674, 1002
BfmI	CTRYAG	1 cut(s)	1045
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	93, 538, 628
BlsI	GCNGC	3 cut(s)	94, 539, 629
Bme1390I	CCNGG	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	414, 556
BmtI	GCTAGC	1 cut(s)	1005
BpiI	GAAGAC	3 cut(s)	765, 947, 1065
Bpu10I	CCTNAGC	3 cut(s)	150, 459, 810
BpuEI	CTTGAG	1 cut(s)	1039
BsaI	GGTCTC	2 cut(s)	789, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bse1I	ACTGG	4 cut(s)	18, 326, 355, 949
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	4 cut(s)	88, 301, 429, 876
BseMII	CTCAG	4 cut(s)	164, 191, 473, 801
BseNI	ACTGG	4 cut(s)	18, 326, 355, 949
BseRI	GAGGAG	1 cut(s)	827
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	79, 549, 639
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	213, 1051
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	260, 942
BsmAI	GTCTC	3 cut(s)	789, 855, 894
BsmFI	GGGAC	2 cut(s)	260, 942
BsnI	GGCC	2 cut(s)	213, 1051
Bso31I	GGTCTC	2 cut(s)	789, 855
BsoBI	CYCGRG	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	409, 748
BspACI	CCGC	3 cut(s)	154, 715, 871
BspANI	GGCC	2 cut(s)	213, 1051
BspCNI	CTCAG	4 cut(s)	163, 192, 472, 802
BspFNI	CGCG	1 cut(s)	286
BspHI	TCATGA	2 cut(s)	376, 936
BspMI	ACCTGC	1 cut(s)	487
BspOI	GCTAGC	1 cut(s)	1005
BspPI	GGATC	1 cut(s)	417
BspTNI	GGTCTC	2 cut(s)	789, 855
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	4 cut(s)	18, 326, 355, 949
BssMI	GATC	2 cut(s)	409, 748
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	113, 239, 292, 389, 888
BstAUI	TGTACA	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	719, 991, 1003
BstDEI	CTNAG	4 cut(s)	150, 200, 459, 810
BstEII	GGTNACC	2 cut(s)	383, 599
BstF5I	GGATG	4 cut(s)	88, 301, 429, 876
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	288, 627
BstKTI	GATC	2 cut(s)	412, 751
BstMAI	GTCTC	3 cut(s)	789, 855, 894
BstMBI	GATC	2 cut(s)	409, 748
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	1069
BstPI	GGTNACC	2 cut(s)	383, 599
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	1045
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	3 cut(s)	79, 549, 639
BstV2I	GAAGAC	3 cut(s)	765, 947, 1065
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	409
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	213, 1051
BtsCI	GGATG	4 cut(s)	88, 301, 429, 876
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	4 cut(s)	297, 348, 361, 811
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	719, 991, 1003
CciI	TCATGA	2 cut(s)	376, 936
CfoI	GCGC	2 cut(s)	288, 627
Csp6I	GTAC	2 cut(s)	76, 157
CviAII	CATG	4 cut(s)	377, 937, 1066, 1073
CviQI	GTAC	2 cut(s)	76, 157
DdeI	CTNAG	4 cut(s)	150, 200, 459, 810
DpnI	GATC	2 cut(s)	411, 750
DpnII	GATC	2 cut(s)	409, 748
DraI	TTTAAA	2 cut(s)	25, 126
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco31I	GGTCTC	2 cut(s)	789, 855
Eco32I	GATATC	1 cut(s)	802
Eco52I	CGGCCG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	413
Eco91I	GGTNACC	2 cut(s)	383, 599
EcoO65I	GGTNACC	2 cut(s)	383, 599
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	802
FaeI	CATG	4 cut(s)	380, 940, 1069, 1076
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	2 cut(s)	260, 942
FatI	CATG	4 cut(s)	376, 936, 1065, 1072
FauI	CCCGC	1 cut(s)	722
Fnu4HI	GCNGC	3 cut(s)	93, 538, 628
FokI	GGATG	4 cut(s)	95, 308, 436, 863
Fsp4HI	GCNGC	3 cut(s)	93, 538, 628
FspBI	CTAG	2 cut(s)	674, 1002
FspI	TGCGCA	1 cut(s)	626
GlaI	GCGC	2 cut(s)	287, 626
GluI	GCNGC	3 cut(s)	93, 538, 628
HaeIII	GGCC	2 cut(s)	213, 1051
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	2 cut(s)	288, 627
Hin1II	CATG	4 cut(s)	380, 940, 1069, 1076
Hin6I	GCGC	2 cut(s)	286, 625
HinP1I	GCGC	2 cut(s)	286, 625
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	4 cut(s)	206, 281, 416, 572
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	4 cut(s)	241, 468, 611, 896
Hpy166II	GTNNAC	2 cut(s)	19, 581
Hpy188I	TCNGA	3 cut(s)	753, 835, 954
Hpy188III	TCNNGA	7 cut(s)	39, 50, 377, 413, 668, 937, 1034
Hpy8I	GTNNAC	2 cut(s)	19, 581
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	5 cut(s)	113, 239, 292, 389, 888
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	4 cut(s)	312, 359, 482, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	4 cut(s)	150, 200, 459, 810
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	4 cut(s)	380, 940, 1069, 1076
HspAI	GCGC	2 cut(s)	286, 625
Kzo9I	GATC	2 cut(s)	409, 748
Lsp1109I	GCAGC	3 cut(s)	79, 549, 639
LweI	GCATC	2 cut(s)	414, 556
MaeI	CTAG	2 cut(s)	674, 1002
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	4 cut(s)	229, 383, 599, 902
MalI	GATC	2 cut(s)	411, 750
MboI	GATC	2 cut(s)	409, 748
MboII	GAAGA	9 cut(s)	179, 465, 520, 542, 770, 822, 952, 1070, 1079
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	9 cut(s)	34, 44, 268, 313, 567, 701, 728, 824, 1076
MlyI	GAGTC	3 cut(s)	290, 425, 581
MmeI	TCCRAC	3 cut(s)	445, 828, 1038
MnlI	CCTC	8 cut(s)	159, 184, 397, 527, 676, 729, 805, 1034
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	4 cut(s)	24, 125, 162, 327
MslI	CAYNNNNRTG	2 cut(s)	114, 263
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	2 cut(s)	409, 748
NheI	GCTAGC	1 cut(s)	1001
NlaIII	CATG	4 cut(s)	380, 940, 1069, 1076
NmeAIII	GCCGAG	1 cut(s)	1077
NmuCI	GTSAC	3 cut(s)	229, 599, 902
NsbI	TGCGCA	1 cut(s)	626
NspI	RCATGY	1 cut(s)	1069
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	2 cut(s)	376, 936
PaqCI	CACCTGC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	94, 539, 629
PleI	GAGTC	3 cut(s)	289, 424, 580
PpsI	GAGTC	3 cut(s)	289, 424, 580
PshBI	ATTAAT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	225
PspEI	GGTNACC	2 cut(s)	383, 599
PspGI	CCWGG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	2 cut(s)	77, 158
RsaNI	GTAC	2 cut(s)	76, 157
RseI	CAYNNNNRTG	2 cut(s)	114, 263
SaqAI	TTAA	4 cut(s)	24, 125, 162, 327
SatI	GCNGC	3 cut(s)	93, 538, 628
Sau3AI	GATC	2 cut(s)	409, 748
SchI	GAGTC	3 cut(s)	290, 425, 581
ScrFI	CCNGG	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	414, 556
SfcI	CTRYAG	1 cut(s)	1045
Sfr274I	CTCGAG	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	114, 263
SmlI	CTYRAG	2 cut(s)	413, 1018
SmoI	CTYRAG	2 cut(s)	413, 1018
Sse9I	AATT	9 cut(s)	34, 44, 268, 313, 567, 701, 728, 824, 1076
SsiI	CCGC	3 cut(s)	154, 715, 871
SspMI	CTAG	2 cut(s)	674, 1002
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	5 cut(s)	113, 239, 292, 389, 888
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	5 cut(s)	88, 318, 336, 414, 1080
TasI	AATT	9 cut(s)	34, 44, 268, 313, 567, 701, 728, 824, 1076
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	24, 125, 162, 327
Tru9I	TTAA	4 cut(s)	24, 125, 162, 327
TscAI	CASTG	4 cut(s)	297, 355, 361, 811
TseFI	GTSAC	3 cut(s)	229, 599, 902
TseI	GCWGC	3 cut(s)	92, 537, 627
Tsp45I	GTSAC	3 cut(s)	229, 599, 902
TspDTI	ATGAA	7 cut(s)	180, 281, 365, 542, 865, 953, 1089
TspGWI	ACGGA	2 cut(s)	516, 627
TspRI	CASTG	4 cut(s)	297, 355, 361, 811
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	4 cut(s)	34, 44, 268, 1076
XceI	RCATGY	1 cut(s)	1069
XhoI	CTCGAG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	2 cut(s)	674, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.