Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003145

Physical Location & Seq

Genomic Coordinates Reverse (-)

45265049 .. 45266431

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAAGCTGGAAGCTCTAATTTTCTGGCCGTAGCTGATGAAAGTGTTCTAGTAGAAATTCTCTCAAAACTGCCTCTCAAGTCTATATATAGGTTTAGGTGTGTATCGAAAGAGTGGAATGCTCTCACTAGAACTTCATATTTCCTTGACAGACATCGTCTTCACAGCTCTCGCCGCCTCCTCCTCATCTCCTCTTCTTTTCTTGCTGATCAGAAACCAGCTGGAATCTCATTACTTGCCGACGAAGAAACGGCACTTTCAAGTTTGAATATACCTTTCCTCCCCAACGATGCAAGATGGGATTTAGATTTTGTGGGATCTAGTAATGGGTTAGTTTGCTGTAATAAGTTTCTTGATGGTAATGTATTAGCCATAATAGTATGGAACCCAGCAACAACACAATTTAGTTATCATCGTCATTCCTTTGAGGAGGAACTTGAGAATGCTACTTCCTATCCTCTTATAGGTTTTGATTTCATGCATAGCACCAATGTGTACAAAATGGTGGAAGTTTTCCCATATGGTAGTGATGATCCGGATGATCCCCTAAAACTTGATTTTGGAGCCGCAGTCTTCACCCAGAATACACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAGTCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGGTTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATACGCTATGTCAGTGACAATGGCGTCTTCCCAACATTAGTTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGACAGTACTGCTGATCAGGAATCTGATTGGATTGAACAAATGAGAATCAGATGGCCGTCACTATGTGAAGGAAGTTGGTTGTTATTGAGAGGAGTTTGGAAGGATCAATTTGTTTTCAGCAAAAAAGGATATGAAGTTGGTGCACATAATGAGCCGGACAACCTGTTTTTGTATAACCCTATAACCGAGGCATTGAGAAAGGTACATGGAGAAAGAAACAATTTTTTTAGATTTGCAGTAAGTTATGCAGAGAGCAATGTCCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_nucleotid

Protein Analysis

383

Amino Acids

43.45

Weight (kDa)

5.05

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 49	4e-07	F-box domain
FBA_1	PF07734	99 - 382	2.2e-17	F-box associated beta propeller domain
FBA_3	PF08268	100 - 365	2.2e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75210 AT1G75210 AT1G75210
fragaria_vesca	FvH4_2g39770 FvH4_2g39770 FvH4_2g39770
malus_domestica	MD08G1031400.v1.1 MD15G1027200.v1.1
prunus_persica	Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1
pyrus_communis	pycom08g02480 pycom15g02320
rosa_chinensis	RchiOBHm_Chr6g0301091
rosa_laevigata	RLG00000011279
rosa_multiflora	Rmu_sc0003168.1_g000017
rosa_roxburghii	Rroxscaffold_172G00445550 Rroxscaffold_7G00167170
rosa_rugosa	Rorug06G0300700 Rorug06G0300700 Rorug06G0300800 Rorug06G0300900 Rorug06G0301000 Rorug06G0301100 Rorug06G0301200
rosa_samantha	Rh6AG414600 Rh6BG421600 Rh6CG429200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	800
AccI	GTMKAC	1 cut(s)	656
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	2 cut(s)	175, 567
AclWI	GGATC	5 cut(s)	325, 527, 536, 861, 993
AcoI	YGGCCR	2 cut(s)	27, 935
AcsI	RAATTY	2 cut(s)	57, 829
AcyI	GRCGYC	1 cut(s)	801
AdeI	CACNNNGTG	1 cut(s)	947
AfaI	GTAC	3 cut(s)	497, 889, 1086
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	5 cut(s)	261, 268, 667, 748, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	802, 834
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	5 cut(s)	8, 15, 35, 168, 221
AluI	AGCT	5 cut(s)	8, 15, 35, 168, 221
Alw21I	GWGCWC	1 cut(s)	1027
Alw44I	GTGCAC	1 cut(s)	1023
AlwI	GGATC	5 cut(s)	325, 527, 536, 861, 993
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	3 cut(s)	27, 741, 935
ApaLI	GTGCAC	1 cut(s)	1023
ApoI	RAATTY	2 cut(s)	57, 829
Asp700I	GAANNNNTTC	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	568, 872
BaeGI	GKGCMC	1 cut(s)	1027
BbsI	GAAGAC	3 cut(s)	152, 565, 796
Bbv12I	GWGCWC	1 cut(s)	1027
BccI	CCATC	3 cut(s)	291, 350, 927
BceAI	ACGGC	3 cut(s)	14, 267, 922
BclI	TGATCA	2 cut(s)	208, 895
BfaI	CTAG	3 cut(s)	50, 129, 321
BisI	GCNGC	2 cut(s)	175, 567
BlsI	GCNGC	2 cut(s)	176, 568
BmcAI	AGTACT	1 cut(s)	889
BmiI	GGNNCC	2 cut(s)	386, 565
BmsI	GCATC	2 cut(s)	280, 635
BpiI	GAAGAC	3 cut(s)	152, 565, 796
BpuEI	CTTGAG	2 cut(s)	62, 458
BsaHI	GRCGYC	1 cut(s)	801
BsaJI	CCNNGG	1 cut(s)	1068
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	1144
BseAI	TCCGGA	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	1068
BseGI	GGATG	2 cut(s)	544, 698
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	1144
BseRI	GAGGAG	5 cut(s)	170, 173, 181, 443, 987
BseSI	GKGCMC	1 cut(s)	1027
BseYI	CCCAGC	1 cut(s)	388
BshFI	GGCC	3 cut(s)	29, 743, 937
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiSI	CCGG	2 cut(s)	536, 1037
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	124, 448
BsnI	GGCC	3 cut(s)	29, 743, 937
Bsp1286I	GDGCHC	1 cut(s)	1027
Bsp13I	TCCGGA	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
BspACI	CCGC	2 cut(s)	175, 567
BspANI	GGCC	3 cut(s)	29, 743, 937
BspEI	TCCGGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	386, 565
BspPI	GGATC	5 cut(s)	325, 527, 536, 861, 993
BsrDI	GCAATG	1 cut(s)	1144
BsrGI	TGTACA	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	1068
BssMI	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
BssNI	GRCGYC	1 cut(s)	801
Bst4CI	ACNGT	1 cut(s)	887
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	868
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	544, 698
BstKTI	GATC	7 cut(s)	211, 320, 535, 544, 856, 898, 988
BstMBI	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	1027
BstV2I	GAAGAC	3 cut(s)	152, 565, 796
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	29, 743, 937
BtsCI	GGATG	2 cut(s)	544, 698
BtsIMutI	CAGTG	1 cut(s)	796
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	496, 888, 1085
CviAII	CATG	5 cut(s)	478, 630, 734, 822, 1088
CviQI	GTAC	3 cut(s)	496, 888, 1085
DdeI	CTNAG	1 cut(s)	868
DpnI	GATC	7 cut(s)	210, 319, 534, 543, 855, 897, 987
DpnII	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
DraIII	CACNNNGTG	1 cut(s)	947
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
EaeI	YGGCCR	2 cut(s)	27, 935
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	483
FaeI	CATG	5 cut(s)	481, 633, 737, 825, 1091
FatI	CATG	5 cut(s)	477, 629, 733, 821, 1087
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	2 cut(s)	208, 895
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	175, 567
FokI	GGATG	2 cut(s)	551, 685
Fsp4HI	GCNGC	2 cut(s)	175, 567
FspBI	CTAG	3 cut(s)	50, 129, 321
GluI	GCNGC	2 cut(s)	175, 567
GsaI	CCCAGC	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	29, 743, 937
HapII	CCGG	2 cut(s)	536, 1037
HgaI	GACGC	1 cut(s)	790
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	5 cut(s)	481, 633, 737, 825, 1091
HinfI	GANTC	4 cut(s)	225, 608, 902, 927
HpaII	CCGG	2 cut(s)	536, 1037
HphI	GGTGA	2 cut(s)	568, 872
Hpy166II	GTNNAC	5 cut(s)	496, 657, 731, 883, 1025
Hpy188I	TCNGA	3 cut(s)	213, 907, 932
Hpy188III	TCNNGA	4 cut(s)	353, 536, 612, 899
Hpy8I	GTNNAC	5 cut(s)	496, 657, 731, 883, 1025
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	600, 754, 944, 976
HpyCH4III	ACNGT	1 cut(s)	887
HpyCH4V	TGCA	7 cut(s)	293, 481, 626, 839, 1025, 1118, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	868
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	5 cut(s)	481, 633, 737, 825, 1091
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	2 cut(s)	208, 895
Kzo9I	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
LmnI	GCTCC	1 cut(s)	563
LweI	GCATC	2 cut(s)	280, 635
MaeI	CTAG	3 cut(s)	50, 129, 321
MaeIII	GTNAC	3 cut(s)	791, 860, 939
MalI	GATC	7 cut(s)	210, 319, 534, 543, 855, 897, 987
MboI	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
MboII	GAAGA	6 cut(s)	152, 186, 257, 565, 785, 796
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	1027
MluCI	AATT	7 cut(s)	19, 57, 401, 615, 829, 989, 1102
MlyI	GAGTC	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	483
MroI	TCCGGA	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	536, 1037
Mva1269I	GAATGC	2 cut(s)	124, 448
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
NlaIII	CATG	5 cut(s)	481, 633, 737, 825, 1091
NlaIV	GGNNCC	2 cut(s)	386, 565
NmuCI	GTSAC	3 cut(s)	791, 860, 939
NsiI	ATGCAT	1 cut(s)	483
OliI	CACNNNNGTG	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	743
PctI	GAATGC	2 cut(s)	124, 448
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	225, 902, 927
PflFI	GACNNNGTC	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	176, 568
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	386, 565
PsuI	RGATCY	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	3 cut(s)	497, 889, 1086
RsaNI	GTAC	3 cut(s)	496, 888, 1085
RseI	CAYNNNNRTG	1 cut(s)	491
SatI	GCNGC	2 cut(s)	175, 567
Sau3AI	GATC	7 cut(s)	208, 317, 532, 541, 853, 895, 985
ScaI	AGTACT	1 cut(s)	889
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	1027
SfaNI	GCATC	2 cut(s)	280, 635
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	77, 437
SmoI	CTYRAG	2 cut(s)	77, 437
Sse9I	AATT	7 cut(s)	19, 57, 401, 615, 829, 989, 1102
SseBI	AGGCCT	1 cut(s)	743
SsiI	CCGC	2 cut(s)	175, 567
SspMI	CTAG	3 cut(s)	50, 129, 321
StuI	AGGCCT	1 cut(s)	743
TaaI	ACNGT	1 cut(s)	887
TaqI	TCGA	2 cut(s)	107, 611
TasI	AATT	7 cut(s)	19, 57, 401, 615, 829, 989, 1102
TatI	WGTACW	2 cut(s)	495, 887
TauI	GCSGC	2 cut(s)	177, 569
TfiI	GAWTC	3 cut(s)	225, 902, 927
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	3 cut(s)	791, 860, 939
Tsp45I	GTSAC	3 cut(s)	791, 860, 939
TspDTI	ATGAA	5 cut(s)	54, 126, 466, 810, 1029
TspRI	CASTG	1 cut(s)	796
Tth111I	GACNNNGTC	1 cut(s)	156
VneI	GTGCAC	1 cut(s)	1023
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	57, 829
XmiI	GTMKAC	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	3 cut(s)	50, 129, 321
ZrmI	AGTACT	1 cut(s)	889
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.