Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003145

Physical Location & Seq

Genomic Coordinates Reverse (-)

45276037 .. 45276940

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0301100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAACCTGGAGCTAGTTTTTTGGCTATAGCTGATGAAAACATCGTCTTCACAGCTCTCGCCGTCTTCTCCTCATCCTCTCTTGCTGCCGGAATTAGTAATAAGAAAGTTGGAATCTCATTACTTGCTGACGAAGAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAACGATGCAAGATGGGATTTAAAATTTGTGGGATCTAGTAATGGGTTAGTTTGTTGCGTTACCTTGCTCAAGGGTACTCGAATAGCCACAGTAGTATGGAACTCAGCAACAGAACAATTTAATTATTTTCCTATTGTTTTGGAGAAAAGAGTTGAGAATGCTACTTATTACTATCGTCTGATCGTTGATTTCATGCACAGCATTAGTGCATACAAGTTGGTGACAGTTCGCCCTTATGTTAATCCCATTAATGATCCGAACCAACTTACTTTTCAAGCCAGAGTGTTCAATCCTAATAGAAATTCTTGGAGAGTAGTTGAACCGGAACTTGGACTTACATCATGTAAAGGGTTTAATACTCACTCAATAACTGTGAATGGAGTGCTGTATTGGTTGGTAGAGAATAAACCAGCTGGGGTGGCTCTCGTTTCGTTCAGTTTACATGATGAGGCCTTCAAGGATACATGGAAACCATTACCAGGAGAAATACGCCATCTTAGTAAGGATATTTTGTTGCATATGCAATTAAGTCGATGGAAAAATTCACTTACAGTTTTAGGCTACCTTCCGGTGGAGGAGGACGACCAATTAAGTTGTGACTTGGGTGGATACTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_nucleotid

Protein Analysis

264

Amino Acids

29.49

Weight (kDa)

5.75

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	48 - 212	9.7e-09	F-box associated beta propeller domain
FBA_1	PF07734	62 - 228	1.3e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75210 AT1G75210 AT1G75210
fragaria_vesca	FvH4_2g39770 FvH4_2g39770 FvH4_2g39770
malus_domestica	MD08G1031400.v1.1 MD15G1027200.v1.1
prunus_persica	Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1 Prupe.1G379000_v2.0.a1
pyrus_communis	pycom08g02480 pycom15g02320
rosa_chinensis	RchiOBHm_Chr6g0301091
rosa_laevigata	RLG00000011279
rosa_multiflora	Rmu_sc0003168.1_g000017
rosa_roxburghii	Rroxscaffold_172G00445550 Rroxscaffold_7G00167170
rosa_rugosa	Rorug06G0300700 Rorug06G0300700 Rorug06G0300800 Rorug06G0300900 Rorug06G0301000 Rorug06G0301100 Rorug06G0301200
rosa_samantha	Rh6AG414600 Rh6BG421600 Rh6CG429200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	214, 422
AcsI	RAATTY	3 cut(s)	197, 475, 715
AfaI	GTAC	2 cut(s)	162, 250
AfiI	CCNNNNNNNGG	3 cut(s)	503, 653, 745
AgsI	TTSAA	5 cut(s)	150, 449, 463, 494, 631
AjnI	CCWGG	2 cut(s)	7, 652
AjuI	GAANNNNNNNTTGG	4 cut(s)	429, 461, 486, 518
AluBI	AGCT	4 cut(s)	14, 32, 56, 587
AluI	AGCT	4 cut(s)	14, 32, 56, 587
AlwI	GGATC	2 cut(s)	214, 422
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	3 cut(s)	197, 475, 715
AseI	ATTAAT	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	406
BbsI	GAAGAC	2 cut(s)	40, 58
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	3 cut(s)	180, 675, 702
BceAI	ACGGC	2 cut(s)	47, 156
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	2 cut(s)	9, 654
BciVI	GTATCC	2 cut(s)	628, 776
BfaI	CTAG	2 cut(s)	15, 210
BfmI	CTRYAG	1 cut(s)	27
BfuI	GTATCC	2 cut(s)	628, 776
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	9, 654
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	9, 654
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	40, 58
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	227
BsaWI	WCCGGW	2 cut(s)	496, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 653, 745
BseBI	CCWGG	2 cut(s)	9, 654
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	3 cut(s)	503, 653, 745
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	61, 764
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	90, 497, 743
BslI	CCNNNNNNNGG	3 cut(s)	503, 653, 745
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	206, 354, 427
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	214, 422
BssMI	GATC	3 cut(s)	206, 354, 427
Bst2UI	CCWGG	2 cut(s)	9, 654
Bst4CI	ACNGT	4 cut(s)	265, 400, 547, 727
BstDEI	CTNAG	2 cut(s)	277, 671
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	209, 357, 430
BstMBI	GATC	3 cut(s)	206, 354, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	2 cut(s)	9, 654
BstSCI	CCNGG	2 cut(s)	7, 652
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	2 cut(s)	40, 58
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuI	GTATCC	2 cut(s)	628, 776
BsuRI	GGCC	1 cut(s)	626
BtsCI	GGATG	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	161, 249
CviAII	CATG	4 cut(s)	367, 516, 617, 639
CviQI	GTAC	2 cut(s)	161, 249
DdeI	CTNAG	2 cut(s)	277, 671
DpnI	GATC	3 cut(s)	208, 356, 429
DpnII	GATC	3 cut(s)	206, 354, 427
DraI	TTTAAA	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	7, 652
FaeI	CATG	4 cut(s)	370, 519, 620, 642
FatI	CATG	4 cut(s)	366, 515, 616, 638
FauNDI	CATATG	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	2 cut(s)	15, 210
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	3 cut(s)	90, 497, 743
Hin1II	CATG	4 cut(s)	370, 519, 620, 642
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	3 cut(s)	90, 497, 743
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	161, 614
Hpy188I	TCNGA	2 cut(s)	354, 432
Hpy8I	GTNNAC	2 cut(s)	161, 614
HpyAV	CCTTC	2 cut(s)	637, 749
HpyCH4III	ACNGT	4 cut(s)	265, 400, 547, 727
HpyCH4V	TGCA	5 cut(s)	182, 370, 383, 691, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	277, 671
Hsp92II	CATG	4 cut(s)	370, 519, 620, 642
Kzo9I	GATC	3 cut(s)	206, 354, 427
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	9 cut(s)	21, 103, 466, 510, 573, 597, 639, 666, 756
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	15, 210
MaeIII	GTNAC	3 cut(s)	232, 394, 770
MalI	GATC	3 cut(s)	208, 356, 429
MboI	GATC	3 cut(s)	206, 354, 427
MboII	GAAGA	3 cut(s)	40, 58, 146
MflI	RGATCY	1 cut(s)	206
MluCI	AATT	8 cut(s)	93, 197, 290, 295, 475, 698, 715, 761
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	82, 88, 179, 616, 742, 745
MseI	TTAA	7 cut(s)	194, 294, 414, 423, 528, 701, 764
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	3 cut(s)	90, 497, 743
MspR9I	CCNGG	2 cut(s)	9, 654
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	9, 654
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	206, 354, 427
NlaIII	CATG	4 cut(s)	370, 519, 620, 642
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	394, 770
PceI	AGGCCT	1 cut(s)	626
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	7, 652
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	7, 652
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	162, 250
RsaNI	GTAC	2 cut(s)	161, 249
SaqAI	TTAA	7 cut(s)	194, 294, 414, 423, 528, 701, 764
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	3 cut(s)	206, 354, 427
ScrFI	CCNGG	2 cut(s)	9, 654
SetI	ASST	8 cut(s)	10, 16, 34, 58, 166, 239, 589, 741
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	8 cut(s)	93, 197, 290, 295, 475, 698, 715, 761
SseBI	AGGCCT	1 cut(s)	626
SspMI	CTAG	2 cut(s)	15, 210
StuI	AGGCCT	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	7, 652
TaaI	ACNGT	4 cut(s)	265, 400, 547, 727
TaqI	TCGA	2 cut(s)	253, 706
TasI	AATT	8 cut(s)	93, 197, 290, 295, 475, 698, 715, 761
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	7 cut(s)	194, 294, 414, 423, 528, 701, 764
Tru9I	TTAA	7 cut(s)	194, 294, 414, 423, 528, 701, 764
TseFI	GTSAC	2 cut(s)	394, 770
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	394, 770
TspDTI	ATGAA	2 cut(s)	51, 355
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	3 cut(s)	197, 475, 715
XspI	CTAG	2 cut(s)	15, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.