Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015227

Physical Location & Seq

Genomic Coordinates Forward (+)

2476391 .. 2480397

Gene Structure 4007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3447 bp

ATGGCAGAACAAGAAAACAAGTGGAGATTGTTGCAGAGGACCAAGTTAGTTTTTTTGGGAGTTGGACTCTGGTCTTTATTCAAACTTCCGAACATCGGTGCGAAGACGGATGATGAAGGCGAAATTCGAGCCTCTTGTCCGACAACAAATGCCTGGAATCTGGTGATGGTTTTGTTGGTTGGAGGAGAAAAATTGAAAGGCAATGTCAAATGGTGGTACTTTTTGAAAGTGTTGCTCAATGTCGAAAGTTGTTCAATATTCATTTTAAGACCAATACTTCAAAGTAAAATGGTTGTTACCTTTATTTTGTGTTATTGTCTTTCATTTCAAATAAGATTATACGATCGACATACGTTTGGTCAATCAATCTCCCATGCTACAAAATTTGATATGAAAAAAAAATATTGCAAGTTTGTTCTCTTGAAAGGAAACAATAAACGATCCATTGGTCAAAAAGTTAACTTTCTTTTTGTGACAAGTAATATTTTAAATTACTTTAACCCACGACTACAAAAAAATCATCACTTATCACGAATTTGGGTATTAACCCAAATAGAAGAAGTGGGTCGAATACTTGGCATGCCCATGCCCGACCCATTTAAAATTGGTATTTCAAACAAAGCCAGAAGTTTGACCCAGAACCTCTTCTGGCACGATCAAGTTGACATATTTACTTGTCTTCTACTTGACGGCCTTCGGAAAAGTGAAAGCTTTTGCCTGCACTCAATTCTTGACGGCACAGTGAATGCTTTGCGCAAGGTTTCGATAACCCATTGCAGGGAATTCAAATTAGGAGCCCTCGCAGACGTTTACTCGGCCAACAATATCCTCAATGGATATGCGAGATGTCAAGATTTTTATCTTGCACACAAAATGTTTGATTATATGCCTCACAGAGATACTGTCTCTTGGAATACGATGATCGCGGGGCATGTAAACTATGGAAGCTTTGAGGGTGCGTGGGAGATACTGAACTCCATGAAAAGATGTGGGTTTGATTCTGATGGGTATACATTTGGAAGCATACTTAAGGGTGTTGCTTGTGCTTGTCGATGCGATCTTGGGCAGCAAGTGCATTCTACGATTGTTAAGACGGGTTATGTGGGTAATGTTTATTCTGGAAGTGCCCTTTTGGACATGTATGCAAAGTGTGGGAGGGTTGAGGAGGCGTATGTGGTTTTCAAATCCTTGCCAGAACGTAATTCTGTGTCATGGAATGCGCTAATTGCTGGTTTCGTGCAAGTAGGCGATCGCAAGACTGCTTTTTGGTTGTTGAATTTCATGGAGCAGGAGGGAGTGAAGCTTGAGGATGGCACAATTTCTCCACTTCTGACATTGCTTGATGATGTCGAGTTTTACAAGTCTGTTGCACAGCTCCATTGTAAAATTATAAAACATGGGCTGGGATGTGAAAGTACGGTATGCAACGCGACAATTACTTCATACTCAGAATGTGGGTCGATAGAAGATGCGGAAAGAGTGTTTGATGCTGCTTTTGGTAACAGAGATTTGGTAACATGGAATTCCATGCTAGCGGCATACTTGGTTCACAATAACGAACTAGTCGCTTCCAAACTCTTCATCGACATGCAAATGCATGGATTTGAACCAGACATCTACAGTTATACAAGCATCATCAGTGCCTATTCTGAAGTAAATAAAAACCATGGAAACTTCTATCACGGGTTGGTGATAAAAAGGGGATTAGAAAAATCAGAGCCAATCTCAAATGCTTTGATAGCCAGGTATCTCAAGTCAAATAAAAATTCCATGGAAGAAGCGCTGCGTATCTTTGAATCCATGGAGTCTAAGGATCGTGTTTCATGGAACTCCATTTTGACTGGATTCTCACAAATTGGTTTAAATGAAGATGCCTTGAAACTCTTTGGGCACATGAGATTTTCGGAGGTGGAGATTGACCATTATGCTCTCTCAGCTGTTCTTAGGTCATGTTCAGATTTAGCAACCCTCCAACTGGGTCAACAGTTTCATGCATTGACACATAAATCAGGTTTCCAGTCCAATGAATTTGTCGCTAGTTCTTTGATCTTTATGTACACAAAGTGTGGGATCATTGAGGATGCTAGAAAATCCTTTGAAGAGACCCCCAGAGACAGCACAATCACTTGGAACTCGATCATTTTTGGATATGCACAACATGGGCAGGGATATGTTGCACTCGACCTCTTCTTCCAAATGAAGAAGGAAAAGGTGAAACTAGATCATATAACGTTTGTTGCAGTACTAACTGCTTGTAGCCACATGGGTTTAGTAGAACAAGGCAGCAAATTCCTAAAGTCTATGGAATCCAATTATGGAATAACCCCGCGAATGGAGCATTATGCTTGTGCAGTAGACCTATATGGGCGCGCTGGGCGTCTAGATGAGGCAAAAGTCTTGATTGCAGCAATGCCATTTAAACCCGACGCAATGGTTTTGAAGACTTTACTTGGTGCCTGTAGGGCTTGTGGGAATATTGAATTAGCTGCTCAAATTGCAGGCCATCTGCTAGACCTAGAGCCGGAAGAGCATTGCACTTACGTTCTTCTCTCCGATATGTATGGACATCTCAAAAGGTGGGATGAGAAAGCTAGTGTAAAGAGGCTTATGAGAGAGAGGGGTGTGAGGAAAGTCCCCGGCTGGAGTTGGATAGAAGTCAAGAATGAGGTGTTTTCTTTCAAAGCCGAAGATCGCTCCCACCCCCATTGCGAAGAGATATATTTCGTGTTGGGAGTTTTGATGGAGGAAATCAGAAGGATGGATGTTGCTGCTAATTTAAATGTTTTGATGCATGATTTCGATCATATCGATGGGTACTTTGATGATATACATCTCCAGAACCATGATTCAGTTTTGTTGGCTTTTGTTTCACATTTGTATACTATGGTATGCACTATTTCTTGTTCCAAAAATTTTAGAAATTATAAAAGAGTTGGAGCTATGAATACAGGCTTTGTTCCAAGGAATCATCAACTTGCCTTGTCTGCTAATGTGAACATGTTGCAAAAAAGTAGTGTGTTAGAACTTTTTCTGATGTGTGAAATAGAAAAAGTGGAGAAGAGGGAACTTATCTACATCTTGATGACATTGTCAAGGTATATCACAAGTTTGTTGTTGTCGCATTTTTGTTGTATGAAAGTTCTTCTCGTGTGTTCAAAAGTGAGTTCTATATGTTTTGAAGTTGTGATCAAGCTCCCTTCTACCTTTGCACTTGATGGTCAATCTCAGTCTGTAATAAGTACTCTATGGTTCGGGTCTTTAGCAGGCTTACTGATAAAGATCAATCGTTTATTTCTAGATGCTTTGATATTCCCCTTTTTCATTCTAGTTATTGATATGGGAAGGGAGAAGAAGATGAATAGATCCGACCGCAACTTCGAATATGGAATTCAAAGGGATCAAATTGAAAATGATTCTCTGAATAATGGTTCTAAAACGCGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1149

Amino Acids

130.53

Weight (kDa)

8.13

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	299 - 347	1.2e-11	PPR repeat family
PPR	PF01535	302 - 332	9.1e-06	PPR repeat
TPR_24	PF23276	403 - 496	8.5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	503 - 549	3.9e-10	PPR repeat family
PPR_2	PF13041	605 - 652	2.9e-06	PPR repeat family
PPR_2	PF13041	706 - 753	4.2e-09	PPR repeat family
E_motif	PF20431	825 - 885	4.9e-13	E motif
PSI_PsaJ	PF01701	1077 - 1102	4e-06	Photosystem I reaction centre subunit IX / PsaJ

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25970
fragaria_vesca	FvH4_3g28520
malus_domestica	MD15G1043900.v1.1
prunus_persica	Prupe.1G397500_v2.0.a1
pyrus_communis	pycom15g04090
rosa_chinensis	RchiOBHm_Chr4g0402431
rosa_laevigata	RLG00000009084
rosa_multiflora	Rmu_co8477433.1_g000001 Rmu_ssc0000330.1_g000025
rosa_roxburghii	Rroxscaffold_5G00347130
rosa_rugosa	Rorug04G0035300
rosa_samantha	Rh4AG112700 Rh4BG105200 Rh4CG119500 Rh4DG104500
rosa_wichuraiana	Rw4G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1391, 2925
Acc16I	TGCGCA	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	2453
AccI	GTMKAC	3 cut(s)	1010, 2355, 2879
AccII	CGCG	5 cut(s)	926, 1430, 2329, 2370, 3439
AciI	CCGC	5 cut(s)	926, 1472, 1535, 2327, 3370
AclI	AACGTT	1 cut(s)	2231
AclWI	GGATC	5 cut(s)	435, 1821, 2078, 3357, 3405
AcoI	YGGCCR	1 cut(s)	816
AcuI	CTGAAG	1 cut(s)	1671
AcyI	GRCGYC	1 cut(s)	2377
AdeI	CACNNNGTG	1 cut(s)	2064
AfaI	GTAC	6 cut(s)	218, 1417, 2057, 2244, 2816, 3241
AfeI	AGCGCT	1 cut(s)	1782
AfiI	CCNNNNNNNGG	6 cut(s)	95, 777, 778, 1975, 2332, 2521
AflII	CTTAAG	1 cut(s)	1028
AflIII	ACRYGT	3 cut(s)	1137, 2997, 3437
AhlI	ACTAGT	1 cut(s)	1561
AjnI	CCWGG	2 cut(s)	152, 1742
AluBI	AGCT	9 cut(s)	711, 948, 1303, 1375, 1937, 2486, 2591, 2939, 3193
AluI	AGCT	9 cut(s)	711, 948, 1303, 1375, 1937, 2486, 2591, 2939, 3193
Alw26I	GTCTC	3 cut(s)	910, 2096, 2106
AlwI	GGATC	5 cut(s)	435, 1821, 2078, 3357, 3405
Aor51HI	AGCGCT	1 cut(s)	1782
AoxI	GGCC	3 cut(s)	691, 816, 2500
ApeKI	GCWGC	7 cut(s)	1066, 1490, 1783, 2283, 2405, 2486, 2768
ArsI	GACNNNNNNTTYG	2 cut(s)	3359, 3391
AsiSI	GCGATCGC	1 cut(s)	1252
Asp700I	GAANNNNTTC	2 cut(s)	644, 3027
AspLEI	GCGC	5 cut(s)	756, 1222, 1783, 2370, 2372
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	2637
AsuHPI	GGTGA	3 cut(s)	175, 1702, 2224
AsuII	TTCGAA	1 cut(s)	3378
AsuNHI	GCTAGC	1 cut(s)	1531
AvaII	GGWCC	1 cut(s)	39
BaeGI	GKGCMC	2 cut(s)	1129, 1893
BanI	GGYRCC	1 cut(s)	2453
BanII	GRGCYC	1 cut(s)	799
BauI	CACGAG	1 cut(s)	3146
BbsI	GAAGAC	3 cut(s)	110, 671, 2447
BbvI	GCAGC	7 cut(s)	1078, 1477, 1770, 2295, 2417, 2473, 2755
BccI	CCATC	8 cut(s)	160, 998, 1304, 2511, 2734, 2752, 2804, 3209
BceAI	ACGGC	2 cut(s)	706, 751
BciT130I	CCWGG	2 cut(s)	154, 1744
BclI	TGATCA	1 cut(s)	3186
BcnI	CCSGG	1 cut(s)	2637
BcoDI	GTCTC	3 cut(s)	910, 2096, 2106
BcuI	ACTAGT	1 cut(s)	1561
BfmI	CTRYAG	2 cut(s)	1618, 2458
BfoI	RGCGCY	1 cut(s)	1784
BfrI	CTTAAG	1 cut(s)	1028
BglI	GCCNNNNNGGC	1 cut(s)	2462
BisI	GCNGC	8 cut(s)	1067, 1491, 1536, 1784, 2284, 2406, 2487, 2769
BlsI	GCNGC	8 cut(s)	1068, 1492, 1537, 1785, 2285, 2407, 2488, 2770
BmcAI	AGTACT	2 cut(s)	2244, 3241
Bme1390I	CCNGG	3 cut(s)	154, 1744, 2637
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	796, 2455
BmrFI	CCNGG	3 cut(s)	154, 1744, 2637
BmrI	ACTGGG	1 cut(s)	1985
BmsI	GCATC	8 cut(s)	1043, 1459, 1477, 1641, 1861, 2071, 2778, 3289
BmtI	GCTAGC	1 cut(s)	1535
BmuI	ACTGGG	1 cut(s)	1985
BoxI	GACNNNNGTC	1 cut(s)	70
BpiI	GAAGAC	3 cut(s)	110, 671, 2447
BplI	GAGNNNNNCTC	4 cut(s)	51, 83, 1709, 1741
BpmI	CTGGAG	2 cut(s)	2662, 2819
Bpu14I	TTCGAA	1 cut(s)	3378
BpuEI	CTTGAG	2 cut(s)	1325, 1736
BpuMI	CCSGG	1 cut(s)	2637
Bsa29I	ATCGAT	1 cut(s)	2808
BsaBI	GATNNNNATC	4 cut(s)	858, 2799, 2829, 3278
BsaHI	GRCGYC	1 cut(s)	2377
BsaI	GGTCTC	1 cut(s)	2096
BsaJI	CCNNGG	5 cut(s)	1666, 1770, 1800, 2635, 2960
BsaXI	ACNNNNNCTCC	2 cut(s)	1306, 1336
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 777, 778, 1975, 2332, 2521
Bse1I	ACTGG	3 cut(s)	1846, 1980, 2017
Bse3DI	GCAATG	7 cut(s)	208, 772, 1334, 2415, 2436, 2530, 2704
Bse8I	GATNNNNATC	4 cut(s)	858, 2799, 2829, 3278
BseBI	CCWGG	2 cut(s)	154, 1744
BseCI	ATCGAT	1 cut(s)	2808
BseDI	CCNNGG	5 cut(s)	1666, 1770, 1800, 2635, 2960
BseGI	GGATG	7 cut(s)	115, 1315, 1412, 2086, 2587, 2763, 2767
BseJI	GATNNNNATC	4 cut(s)	858, 2799, 2829, 3278
BseLI	CCNNNNNNNGG	6 cut(s)	95, 777, 778, 1975, 2332, 2521
BseMI	GCAATG	7 cut(s)	208, 772, 1334, 2415, 2436, 2530, 2704
BseMII	CTCAG	3 cut(s)	1461, 1947, 3239
BseNI	ACTGG	3 cut(s)	1846, 1980, 2017
BsePI	GCGCGC	1 cut(s)	2368
BseRI	GAGGAG	2 cut(s)	198, 1178
BseSI	GKGCMC	2 cut(s)	1129, 1893
BseXI	GCAGC	7 cut(s)	1078, 1477, 1770, 2295, 2417, 2473, 2755
BseYI	CCCAGC	2 cut(s)	1402, 2372
BsgI	GTGCAG	2 cut(s)	704, 2370
Bsh1236I	CGCG	5 cut(s)	926, 1430, 2329, 2370, 3439
Bsh1285I	CGRYCG	3 cut(s)	346, 1252, 3370
BshFI	GGCC	3 cut(s)	693, 818, 2502
BshNI	GGYRCC	1 cut(s)	2453
BshVI	ATCGAT	1 cut(s)	2808
BsiEI	CGRYCG	3 cut(s)	346, 1252, 3370
BsiSI	CCGG	2 cut(s)	2522, 2637
BslFI	GGGAC	1 cut(s)	2618
BslI	CCNNNNNNNGG	6 cut(s)	95, 777, 778, 1975, 2332, 2521
BsmAI	GTCTC	3 cut(s)	910, 2096, 2106
BsmFI	GGGAC	1 cut(s)	2618
BsmI	GAATGC	3 cut(s)	751, 1075, 1222
BsnI	GGCC	3 cut(s)	693, 818, 2502
Bso31I	GGTCTC	1 cut(s)	2096
Bsp119I	TTCGAA	1 cut(s)	3378
Bsp1286I	GDGCHC	3 cut(s)	799, 1129, 1893
Bsp1407I	TGTACA	1 cut(s)	2055
Bsp19I	CCATGG	3 cut(s)	1666, 1770, 1800
BspACI	CCGC	5 cut(s)	926, 1472, 1535, 2327, 3370
BspANI	GGCC	3 cut(s)	693, 818, 2502
BspCNI	CTCAG	3 cut(s)	1460, 1946, 3238
BspDI	ATCGAT	1 cut(s)	2808
BspFNI	CGCG	5 cut(s)	926, 1430, 2329, 2370, 3439
BspLI	GGNNCC	2 cut(s)	796, 2455
BspOI	GCTAGC	1 cut(s)	1535
BspPI	GGATC	5 cut(s)	435, 1821, 2078, 3357, 3405
BspQI	GCTCTTC	1 cut(s)	2520
BspT104I	TTCGAA	1 cut(s)	3378
BspT107I	GGYRCC	1 cut(s)	2453
BspTI	CTTAAG	1 cut(s)	1028
BspTNI	GGTCTC	1 cut(s)	2096
BsrDI	GCAATG	7 cut(s)	208, 772, 1334, 2415, 2436, 2530, 2704
BsrGI	TGTACA	1 cut(s)	2055
BsrI	ACTGG	3 cut(s)	1846, 1980, 2017
BssECI	CCNNGG	5 cut(s)	1666, 1770, 1800, 2635, 2960
BssHII	GCGCGC	1 cut(s)	2368
BssNAI	GTATAC	2 cut(s)	1011, 2880
BssNI	GRCGYC	1 cut(s)	2377
BssSI	CACGAG	1 cut(s)	3146
BssT1I	CCWWGG	4 cut(s)	1666, 1770, 1800, 2960
Bst1107I	GTATAC	2 cut(s)	1011, 2880
Bst2BI	CACGAG	1 cut(s)	3146
Bst2UI	CCWGG	2 cut(s)	154, 1744
Bst4CI	ACNGT	5 cut(s)	742, 904, 1420, 1622, 1986
Bst6I	CTCTTC	7 cut(s)	650, 1583, 2094, 2192, 2520, 2706, 3053
BstACI	GRCGYC	1 cut(s)	2377
BstAFI	CTTAAG	1 cut(s)	1028
BstAPI	GCANNNNNTGC	1 cut(s)	1072
BstAUI	TGTACA	1 cut(s)	2055
BstBI	TTCGAA	1 cut(s)	3378
BstC8I	GCNNGC	6 cut(s)	581, 719, 1533, 2370, 2500, 3265
BstDEI	CTNAG	5 cut(s)	1447, 1809, 1933, 1943, 3225
BstDSI	CCRYGG	3 cut(s)	1666, 1770, 1800
BstF5I	GGATG	7 cut(s)	115, 1315, 1412, 2086, 2587, 2763, 2767
BstFNI	CGCG	5 cut(s)	926, 1430, 2329, 2370, 3439
BstH2I	RGCGCY	1 cut(s)	1784
BstHHI	GCGC	5 cut(s)	756, 1222, 1783, 2370, 2372
BstMAI	GTCTC	3 cut(s)	910, 2096, 2106
BstMCI	CGRYCG	3 cut(s)	346, 1252, 3370
BstNI	CCWGG	2 cut(s)	154, 1744
BstNSI	RCATGY	5 cut(s)	583, 935, 1141, 1591, 3001
BstPAI	GACNNNNGTC	1 cut(s)	70
BstSCI	CCNGG	3 cut(s)	152, 1742, 2635
BstSFI	CTRYAG	2 cut(s)	1618, 2458
BstSLI	GKGCMC	2 cut(s)	1129, 1893
BstUI	CGCG	5 cut(s)	926, 1430, 2329, 2370, 3439
BstV1I	GCAGC	7 cut(s)	1078, 1477, 1770, 2295, 2417, 2473, 2755
BstV2I	GAAGAC	3 cut(s)	110, 671, 2447
BstX2I	RGATCY	1 cut(s)	3362
BstYI	RGATCY	1 cut(s)	3362
BstZ17I	GTATAC	2 cut(s)	1011, 2880
Bsu15I	ATCGAT	1 cut(s)	2808
BsuRI	GGCC	3 cut(s)	693, 818, 2502
BsuTUI	ATCGAT	1 cut(s)	2808
BtgI	CCRYGG	3 cut(s)	1666, 1770, 1800
BtsCI	GGATG	7 cut(s)	115, 1315, 1412, 2086, 2587, 2763, 2767
BtsIMutI	CAGTG	2 cut(s)	747, 1645
Cac8I	GCNNGC	6 cut(s)	581, 719, 1533, 2370, 2500, 3265
CfoI	GCGC	5 cut(s)	756, 1222, 1783, 2370, 2372
Cfr13I	GGNCC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	2808
CseI	GACGC	3 cut(s)	2366, 2435, 3428
Csp6I	GTAC	6 cut(s)	217, 1416, 2056, 2243, 2815, 3240
CspCI	CAANNNNNGTGG	2 cut(s)	2687, 2722
CviQI	GTAC	6 cut(s)	217, 1416, 2056, 2243, 2815, 3240
DdeI	CTNAG	5 cut(s)	1447, 1809, 1933, 1943, 3225
DraI	TTTAAA	5 cut(s)	489, 601, 1863, 2419, 2778
DraIII	CACNNNGTG	1 cut(s)	2064
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	7 cut(s)	650, 1583, 2094, 2192, 2520, 2706, 3053
EarI	CTCTTC	7 cut(s)	650, 1583, 2094, 2192, 2520, 2706, 3053
Eco130I	CCWWGG	4 cut(s)	1666, 1770, 1800, 2960
Eco24I	GRGCYC	1 cut(s)	799
Eco31I	GGTCTC	1 cut(s)	2096
Eco47I	GGWCC	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	1782
Eco57I	CTGAAG	1 cut(s)	1671
EcoRI	GAATTC	3 cut(s)	782, 1522, 3387
EcoRII	CCWGG	2 cut(s)	152, 1742
EcoT14I	CCWWGG	4 cut(s)	1666, 1770, 1800, 2960
EcoT22I	ATGCAT	3 cut(s)	1599, 1996, 2793
EcoT38I	GRGCYC	1 cut(s)	799
ErhI	CCWWGG	4 cut(s)	1666, 1770, 1800, 2960
FaqI	GGGAC	1 cut(s)	2618
FauI	CCCGC	2 cut(s)	919, 2334
FbaI	TGATCA	1 cut(s)	3186
FblI	GTMKAC	3 cut(s)	1010, 2355, 2879
Fnu4HI	GCNGC	8 cut(s)	1067, 1491, 1536, 1784, 2284, 2406, 2487, 2769
FokI	GGATG	7 cut(s)	122, 1322, 1419, 2093, 2594, 2770, 2774
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	8 cut(s)	1067, 1491, 1536, 1784, 2284, 2406, 2487, 2769
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	5 cut(s)	755, 1221, 1782, 2369, 2371
GluI	GCNGC	8 cut(s)	1067, 1491, 1536, 1784, 2284, 2406, 2487, 2769
GsaI	CCCAGC	2 cut(s)	1406, 2376
GsuI	CTGGAG	2 cut(s)	2662, 2819
HaeII	RGCGCY	1 cut(s)	1784
HaeIII	GGCC	3 cut(s)	693, 818, 2502
HapII	CCGG	2 cut(s)	2522, 2637
HgaI	GACGC	3 cut(s)	2366, 2435, 3428
HhaI	GCGC	5 cut(s)	756, 1222, 1783, 2370, 2372
Hin1I	GRCGYC	1 cut(s)	2377
Hin6I	GCGC	5 cut(s)	754, 1220, 1781, 2368, 2370
HinP1I	GCGC	5 cut(s)	754, 1220, 1781, 2368, 2370
HincII	GTYRAC	3 cut(s)	460, 664, 1982
HindII	GTYRAC	3 cut(s)	460, 664, 1982
HindIII	AAGCTT	3 cut(s)	709, 946, 1301
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	2 cut(s)	2522, 2637
HphI	GGTGA	3 cut(s)	175, 1702, 2224
Hpy99I	CGWCG	1 cut(s)	2429
HpyAV	CCTTC	6 cut(s)	110, 704, 2197, 2748, 3207, 3336
HpyCH4III	ACNGT	5 cut(s)	742, 904, 1420, 1622, 1986
HpyCH4IV	ACGT	5 cut(s)	353, 807, 1198, 2231, 2541
HpyF3I	CTNAG	5 cut(s)	1447, 1809, 1933, 1943, 3225
HpySE526I	ACGT	5 cut(s)	353, 807, 1198, 2231, 2541
Hsp92I	GRCGYC	1 cut(s)	2377
HspAI	GCGC	5 cut(s)	754, 1220, 1781, 2368, 2370
Ksp22I	TGATCA	1 cut(s)	3186
KspAI	GTTAAC	1 cut(s)	460
LguI	GCTCTTC	1 cut(s)	2520
LmnI	GCTCC	7 cut(s)	794, 1285, 1380, 2335, 2699, 2936, 3198
Lsp1109I	GCAGC	7 cut(s)	1078, 1477, 1770, 2295, 2417, 2473, 2755
LweI	GCATC	8 cut(s)	1043, 1459, 1477, 1641, 1861, 2071, 2778, 3289
MaeII	ACGT	5 cut(s)	353, 807, 1198, 2231, 2541
MaeIII	GTNAC	4 cut(s)	295, 472, 1499, 1513
MflI	RGATCY	1 cut(s)	3362
MhlI	GDGCHC	3 cut(s)	799, 1129, 1893
MluI	ACGCGT	1 cut(s)	3437
MlyI	GAGTC	2 cut(s)	60, 1814
MmeI	TCCRAC	7 cut(s)	43, 160, 164, 1996, 2627, 2914, 3390
Mph1103I	ATGCAT	3 cut(s)	1599, 1996, 2793
MroXI	GAANNNNTTC	2 cut(s)	644, 3027
MslI	CAYNNNNRTG	5 cut(s)	584, 1586, 1592, 2808, 3080
MspA1I	CMGCKG	1 cut(s)	1937
MspCI	CTTAAG	1 cut(s)	1028
MspI	CCGG	2 cut(s)	2522, 2637
MspR9I	CCNGG	3 cut(s)	154, 1744, 2637
Mva1269I	GAATGC	3 cut(s)	751, 1075, 1222
MvaI	CCWGG	2 cut(s)	154, 1744
MvnI	CGCG	5 cut(s)	926, 1430, 2329, 2370, 3439
NciI	CCSGG	1 cut(s)	2637
NcoI	CCATGG	3 cut(s)	1666, 1770, 1800
NheI	GCTAGC	1 cut(s)	1531
NlaIV	GGNNCC	2 cut(s)	796, 2455
NmeAIII	GCCGAG	1 cut(s)	794
NmuCI	GTSAC	1 cut(s)	472
NsbI	TGCGCA	1 cut(s)	755
NsiI	ATGCAT	3 cut(s)	1599, 1996, 2793
NspI	RCATGY	5 cut(s)	583, 935, 1141, 1591, 3001
NspV	TTCGAA	1 cut(s)	3378
PaeI	GCATGC	1 cut(s)	583
PauI	GCGCGC	1 cut(s)	2368
PciI	ACATGT	2 cut(s)	1137, 2997
PciSI	GCTCTTC	1 cut(s)	2520
PcsI	WCGNNNNNNNCGW	1 cut(s)	2805
PctI	GAATGC	3 cut(s)	751, 1075, 1222
PdmI	GAANNNNTTC	2 cut(s)	644, 3027
PfeI	GAWTC	8 cut(s)	157, 998, 1796, 1845, 2306, 2846, 2965, 3413
PflFI	GACNNNGTC	1 cut(s)	3088
PkrI	GCNGC	8 cut(s)	1068, 1492, 1537, 1785, 2285, 2407, 2488, 2770
Ple19I	CGATCG	2 cut(s)	346, 1252
PleI	GAGTC	2 cut(s)	60, 1813
PpsI	GAGTC	2 cut(s)	60, 1813
PscI	ACATGT	2 cut(s)	1137, 2997
PshAI	GACNNNNGTC	1 cut(s)	70
PsiI	TTATAA	2 cut(s)	1391, 2925
Psp1406I	AACGTT	1 cut(s)	2231
Psp6I	CCWGG	2 cut(s)	152, 1742
PspFI	CCCAGC	2 cut(s)	1402, 2372
PspGI	CCWGG	2 cut(s)	152, 1742
PspN4I	GGNNCC	2 cut(s)	796, 2455
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	3362
PsyI	GACNNNGTC	1 cut(s)	3088
PteI	GCGCGC	1 cut(s)	2368
PvuI	CGATCG	2 cut(s)	346, 1252
PvuII	CAGCTG	1 cut(s)	1937
RgaI	GCGATCGC	1 cut(s)	1252
RsaI	GTAC	6 cut(s)	218, 1417, 2057, 2244, 2816, 3241
RsaNI	GTAC	6 cut(s)	217, 1416, 2056, 2243, 2815, 3240
RseI	CAYNNNNRTG	5 cut(s)	584, 1586, 1592, 2808, 3080
SapI	GCTCTTC	1 cut(s)	2520
SatI	GCNGC	8 cut(s)	1067, 1491, 1536, 1784, 2284, 2406, 2487, 2769
Sau96I	GGNCC	1 cut(s)	39
ScaI	AGTACT	2 cut(s)	2244, 3241
SchI	GAGTC	2 cut(s)	60, 1814
ScrFI	CCNGG	3 cut(s)	154, 1744, 2637
SduI	GDGCHC	3 cut(s)	799, 1129, 1893
SfaAI	GCGATCGC	1 cut(s)	1252
SfaNI	GCATC	8 cut(s)	1043, 1459, 1477, 1641, 1861, 2071, 2778, 3289
SfcI	CTRYAG	2 cut(s)	1618, 2458
SfuI	TTCGAA	1 cut(s)	3378
SgfI	GCGATCGC	1 cut(s)	1252
SinI	GGWCC	1 cut(s)	39
SmiI	ATTTAAAT	1 cut(s)	2778
SmiMI	CAYNNNNRTG	5 cut(s)	584, 1586, 1592, 2808, 3080
SmlI	CTYRAG	3 cut(s)	1028, 1304, 1751
SmoI	CTYRAG	3 cut(s)	1028, 1304, 1751
SpeI	ACTAGT	1 cut(s)	1561
SphI	GCATGC	1 cut(s)	583
SsiI	CCGC	5 cut(s)	926, 1472, 1535, 2327, 3370
SspI	AATATT	4 cut(s)	258, 404, 484, 2476
StyD4I	CCNGG	3 cut(s)	152, 1742, 2635
StyI	CCWWGG	4 cut(s)	1666, 1770, 1800, 2960
SwaI	ATTTAAAT	1 cut(s)	2778
TaaI	ACNGT	5 cut(s)	742, 904, 1420, 1622, 1986
TaiI	ACGT	5 cut(s)	356, 810, 1201, 2234, 2544
TatI	WGTACW	3 cut(s)	2055, 2242, 3239
TauI	GCSGC	1 cut(s)	1538
TfiI	GAWTC	8 cut(s)	157, 998, 1796, 1845, 2306, 2846, 2965, 3413
TscAI	CASTG	2 cut(s)	747, 1645
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	7 cut(s)	1066, 1490, 1783, 2283, 2405, 2486, 2768
Tsp45I	GTSAC	1 cut(s)	472
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	747, 1645
Tth111I	GACNNNGTC	1 cut(s)	3088
Vha464I	CTTAAG	1 cut(s)	1028
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	2 cut(s)	2380, 3295
XceI	RCATGY	5 cut(s)	583, 935, 1141, 1591, 3001
XmiI	GTMKAC	3 cut(s)	1010, 2355, 2879
XmnI	GAANNNNTTC	2 cut(s)	644, 3027
ZrmI	AGTACT	2 cut(s)	2244, 3241
Zsp2I	ATGCAT	3 cut(s)	1599, 1996, 2793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.