Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011753

Physical Location & Seq

Genomic Coordinates Forward (+)

3197227 .. 3199118

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGTTCGACGCAGAGATCTACCTTGTCAACAAATGTGGCGGAATTGGTTGATGCTTCGCAATCAGCCCGCCAAGAGGTTTCGTACATTGGTAGTATGCCGGTTTATGTTAGGGAGTTGATTGCCGGAGGCGCTGCTGGAGGATTCGCGAAGACTGCGGTTGCGCCGCTGGAAAGGACCAAGATACTCTTGCAGACAAGAACAGAGTTCCGTTCTCTCGGAGTGTGTCAATCTCTGAAGAAGTTATTTCAGCATGAAGGTGTTCGAGGATTCTACAAAGGAAATGGAGCTAGTGTCGTTCGAATTATTCCCTATGCAGCCTTACATTACATGACATATGAGCAGTACAGGTGTTGGATCTTGAACAATTATTCTGCTTTAGGTTCAGGGCCTCATATTGATCTTTTAGCCGGTGCAGCAGCTGGAGGGACAGCCGTTTTATGCACGTACCCCTTGGACCTTGCTCGCACCAAACTTGCTTATCAGGTTGTTAATACTAGAGGCAACTTTGATTATGGTATGAAAGGCGCACATGCTCAAGTTGCTGCTTATAAGGGCATAAAGGACGTGCTTTCAAGTGTTTACAAGGAGGGGGGCTTGCGTGGGCTTTATCGAGGTGTAGGCCCAACACTCACCGGAATACTCCCTTATGCTGGTTTAAAGTTCTATATATATGAGGAACTTAAACTCCATGTTCCTGAAGAGTATGAAAGGTCCATTGTGATGCGTCTTTCCTGTGGAGCTTTGGCCGGGTTATTTGGGCAAACTCTCACATACCCCTTGGATGTTGTTAGGAGGCAAATGCAGGTTGAGAATTTGCGGTCTTCAGATCATGGCGGTGTTAGGTACAGAAACACAATGGCGGGTCTTAAATATATCATCCGAAACCAAGGATGGAAAAAGTTGTTTTCAGGCCTAAGCATTAATTATATCAAGATCGTTCCTTCTGTGGCAATCGGTTTCACTGCATACGACACGATGAAGGTTTGGCTCCACATTCCGCCCCATCGGAAGTCCAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015215 GO:0015216 GO:0015217 GO:0015228 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015868 GO:0015880 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035349 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051503 GO:0055085 GO:0071077 GO:0071106 GO:0071702 GO:0071705 GO:0072530 GO:0080121 GO:0080122 GO:0098655 GO:0098656 GO:1901264 GO:1901505 GO:1901679 GO:1990542 GO:1990559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

342

Amino Acids

37.58

Weight (kDa)

9.69

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 122	1.8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	133 - 232	1.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	238 - 332	1.3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14560 AT1G14560 AT1G14560
fragaria_vesca	FvH4_2g31630
malus_domestica	MD08G1064700.v1.1 MD15G1057000.v1.1
prunus_persica	Prupe.1G409600_v2.0.a1 Prupe.1G409600_v2.0.a1
pyrus_communis	pycom08g05290 pycom15g05340
rosa_chinensis	RchiOBHm_Chr6g0311191
rosa_multiflora	Rmu_sc0014471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157920
rosa_rugosa	Rorug06G0386100
rosa_samantha	Rh6AG500400 Rh6BG511000 Rh6CG516700 Rh6DG503300
rosa_wichuraiana	Rw6G043580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	796
AccII	CGCG	1 cut(s)	149
AciI	CCGC	8 cut(s)	41, 70, 158, 167, 820, 837, 863, 1001
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	3 cut(s)	257, 720, 810
AfaI	GTAC	4 cut(s)	86, 347, 449, 848
AfiI	CCNNNNNNNGG	2 cut(s)	76, 653
AgsI	TTSAA	2 cut(s)	364, 576
AjiI	CACGTC	1 cut(s)	568
AloI	GAACNNNNNNTCC	2 cut(s)	672, 704
AluBI	AGCT	3 cut(s)	290, 422, 743
AluI	AGCT	3 cut(s)	290, 422, 743
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	4 cut(s)	389, 622, 747, 913
ApeKI	GCWGC	5 cut(s)	134, 317, 416, 419, 545
ApoI	RAATTY	1 cut(s)	814
AseI	ATTAAT	1 cut(s)	924
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	134, 166, 530
AspS9I	GGNCC	5 cut(s)	177, 389, 457, 623, 714
AsuC2I	CCSGG	1 cut(s)	751
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	1 cut(s)	301
AvaII	GGWCC	3 cut(s)	177, 457, 714
BbsI	GAAGAC	2 cut(s)	158, 816
BbvI	GCAGC	5 cut(s)	121, 329, 428, 431, 532
BccI	CCATC	2 cut(s)	888, 1014
BceAI	ACGGC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	751
BfaI	CTAG	2 cut(s)	291, 498
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	796
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 546
BlsI	GCNGC	6 cut(s)	136, 168, 319, 418, 421, 547
Bme1390I	CCNGG	1 cut(s)	751
Bme18I	GGWCC	3 cut(s)	177, 457, 714
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	5 cut(s)	177, 389, 457, 623, 714
BmiI	GGNNCC	1 cut(s)	992
BmrFI	CCNGG	1 cut(s)	751
BmsI	GCATC	2 cut(s)	43, 714
BpiI	GAAGAC	2 cut(s)	158, 816
BpmI	CTGGAG	2 cut(s)	159, 444
Bpu10I	CCTNAGC	1 cut(s)	917
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	751
BsaAI	YACGTR	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	453, 780, 889
BsaWI	WCCGGW	1 cut(s)	635
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 672, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 653
Bse118I	RCCGGY	2 cut(s)	100, 410
Bse1I	ACTGG	1 cut(s)	1017
BseDI	CCNNGG	3 cut(s)	453, 780, 889
BseGI	GGATG	3 cut(s)	790, 879, 899
BseLI	CCNNNNNNNGG	2 cut(s)	76, 653
BseNI	ACTGG	1 cut(s)	1017
BseXI	GCAGC	5 cut(s)	121, 329, 428, 431, 532
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	4 cut(s)	391, 624, 749, 915
BsiSI	CCGG	5 cut(s)	101, 126, 411, 636, 750
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	76, 653
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	391, 624, 749, 915
Bsp119I	TTCGAA	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	17, 357, 400, 829, 936
Bsp68I	TCGCGA	1 cut(s)	149
BspACI	CCGC	8 cut(s)	41, 70, 158, 167, 820, 837, 863, 1001
BspANI	GGCC	4 cut(s)	391, 624, 749, 915
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	992
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	1 cut(s)	301
BsrFI	RCCGGY	2 cut(s)	100, 410
BsrI	ACTGG	1 cut(s)	1017
BssAI	RCCGGY	2 cut(s)	100, 410
BssECI	CCNNGG	3 cut(s)	453, 780, 889
BssMI	GATC	5 cut(s)	17, 357, 400, 829, 936
BssT1I	CCWWGG	3 cut(s)	453, 780, 889
Bst6I	CTCTTC	1 cut(s)	696
BstBAI	YACGTR	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	70, 466, 599
BstDEI	CTNAG	1 cut(s)	917
BstF5I	GGATG	3 cut(s)	790, 879, 899
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	3 cut(s)	134, 166, 530
BstKTI	GATC	5 cut(s)	20, 360, 403, 832, 939
BstMBI	GATC	5 cut(s)	17, 357, 400, 829, 936
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 155, 416, 542
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	749
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	5 cut(s)	121, 329, 428, 431, 532
BstV2I	GAAGAC	2 cut(s)	158, 816
BstX2I	RGATCY	2 cut(s)	17, 357
BstYI	RGATCY	2 cut(s)	17, 357
BsuRI	GGCC	4 cut(s)	391, 624, 749, 915
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	790, 879, 899
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	963
BtuMI	TCGCGA	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	3 cut(s)	70, 466, 599
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	3 cut(s)	134, 166, 530
Cfr10I	RCCGGY	2 cut(s)	100, 410
Cfr13I	GGNCC	5 cut(s)	177, 389, 457, 623, 714
CseI	GACGC	2 cut(s)	19, 716
Csp6I	GTAC	4 cut(s)	85, 346, 448, 847
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	5 cut(s)	254, 331, 533, 692, 833
CviQI	GTAC	4 cut(s)	85, 346, 448, 847
DdeI	CTNAG	1 cut(s)	917
DpnI	GATC	5 cut(s)	19, 359, 402, 831, 938
DpnII	GATC	5 cut(s)	17, 357, 400, 829, 936
DraI	TTTAAA	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
EciI	GGCGGA	2 cut(s)	56, 990
Eco130I	CCWWGG	3 cut(s)	453, 780, 889
Eco147I	AGGCCT	1 cut(s)	915
Eco47I	GGWCC	3 cut(s)	177, 457, 714
Eco57I	CTGAAG	3 cut(s)	257, 720, 810
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT14I	CCWWGG	3 cut(s)	453, 780, 889
ErhI	CCWWGG	3 cut(s)	453, 780, 889
FaeI	CATG	5 cut(s)	257, 334, 536, 695, 836
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	5 cut(s)	253, 330, 532, 691, 832
FauI	CCCGC	2 cut(s)	77, 856
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 546
FokI	GGATG	3 cut(s)	797, 866, 906
Fsp4HI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 546
FspBI	CTAG	2 cut(s)	291, 498
GlaI	GCGC	3 cut(s)	133, 165, 529
GluI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 546
GsuI	CTGGAG	2 cut(s)	159, 444
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	391, 624, 749, 915
HapII	CCGG	5 cut(s)	101, 126, 411, 636, 750
HgaI	GACGC	2 cut(s)	19, 716
HhaI	GCGC	3 cut(s)	134, 166, 530
Hin1II	CATG	5 cut(s)	257, 334, 536, 695, 836
Hin6I	GCGC	3 cut(s)	132, 164, 528
HinP1I	GCGC	3 cut(s)	132, 164, 528
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	144, 270
HpaII	CCGG	5 cut(s)	101, 126, 411, 636, 750
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	30, 583
Hpy188I	TCNGA	5 cut(s)	221, 237, 829, 884, 1011
Hpy188III	TCNNGA	4 cut(s)	148, 361, 698, 934
Hpy8I	GTNNAC	2 cut(s)	30, 583
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	251, 954, 976
HpyCH4IV	ACGT	2 cut(s)	446, 567
HpyCH4V	TGCA	6 cut(s)	193, 317, 416, 444, 805, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 155, 416, 542
HpyF3I	CTNAG	1 cut(s)	917
HpySE526I	ACGT	2 cut(s)	446, 567
Hsp92II	CATG	5 cut(s)	257, 334, 536, 695, 836
HspAI	GCGC	3 cut(s)	132, 164, 528
Kzo9I	GATC	5 cut(s)	17, 357, 400, 829, 936
LmnI	GCTCC	3 cut(s)	287, 740, 996
Lsp1109I	GCAGC	5 cut(s)	121, 329, 428, 431, 532
LweI	GCATC	2 cut(s)	43, 714
MaeI	CTAG	2 cut(s)	291, 498
MaeII	ACGT	2 cut(s)	446, 567
MalI	GATC	5 cut(s)	19, 359, 402, 831, 938
MboI	GATC	5 cut(s)	17, 357, 400, 829, 936
MboII	GAAGA	4 cut(s)	163, 250, 713, 816
MflI	RGATCY	2 cut(s)	17, 357
MluCI	AATT	5 cut(s)	44, 303, 367, 814, 925
MmeI	TCCRAC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	5 cut(s)	492, 659, 684, 870, 924
MslI	CAYNNNNRTG	3 cut(s)	258, 722, 837
MspA1I	CMGCKG	2 cut(s)	169, 422
MspI	CCGG	5 cut(s)	101, 126, 411, 636, 750
MspR9I	CCNGG	1 cut(s)	751
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	131, 155, 416, 542
NciI	CCSGG	1 cut(s)	751
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	5 cut(s)	17, 357, 400, 829, 936
NlaIII	CATG	5 cut(s)	257, 334, 536, 695, 836
NlaIV	GGNNCC	1 cut(s)	992
NruI	TCGCGA	1 cut(s)	149
NspI	RCATGY	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	144, 270
PkrI	GCNGC	6 cut(s)	136, 168, 319, 418, 421, 547
Ppu21I	YACGTR	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	992
PspPI	GGNCC	5 cut(s)	177, 389, 457, 623, 714
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	17, 357
PvuII	CAGCTG	1 cut(s)	422
RruI	TCGCGA	1 cut(s)	149
RsaI	GTAC	4 cut(s)	86, 347, 449, 848
RsaNI	GTAC	4 cut(s)	85, 346, 448, 847
RseI	CAYNNNNRTG	3 cut(s)	258, 722, 837
SaqAI	TTAA	5 cut(s)	492, 659, 684, 870, 924
SatI	GCNGC	6 cut(s)	135, 167, 318, 417, 420, 546
Sau3AI	GATC	5 cut(s)	17, 357, 400, 829, 936
Sau96I	GGNCC	5 cut(s)	177, 389, 457, 623, 714
ScrFI	CCNGG	1 cut(s)	751
SfaNI	GCATC	2 cut(s)	43, 714
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	3 cut(s)	177, 457, 714
SmiMI	CAYNNNNRTG	3 cut(s)	258, 722, 837
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	5 cut(s)	44, 303, 367, 814, 925
SseBI	AGGCCT	1 cut(s)	915
SsiI	CCGC	8 cut(s)	41, 70, 158, 167, 820, 837, 863, 1001
SspMI	CTAG	2 cut(s)	291, 498
StuI	AGGCCT	1 cut(s)	915
StyD4I	CCNGG	1 cut(s)	749
StyI	CCWWGG	3 cut(s)	453, 780, 889
TaiI	ACGT	2 cut(s)	449, 570
TaqI	TCGA	4 cut(s)	8, 265, 301, 613
TasI	AATT	5 cut(s)	44, 303, 367, 814, 925
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	144, 270
Tru1I	TTAA	5 cut(s)	492, 659, 684, 870, 924
Tru9I	TTAA	5 cut(s)	492, 659, 684, 870, 924
TscAI	CASTG	1 cut(s)	970
TseI	GCWGC	5 cut(s)	134, 317, 416, 419, 545
TspDTI	ATGAA	4 cut(s)	270, 536, 723, 995
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	3 cut(s)	177, 457, 714
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	291, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.