Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0018126

Physical Location & Seq

Genomic Coordinates Forward (+)

4043456 .. 4044517

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATTTCACCAAATGTATTATCAAGCTTGAAAAGTCTAGAAGACTTGAGAATGCGAAACAGCTTCCACCGATGGGTGGCAGAAGGAGTCACCGGAGAAAGAAGTAATGCTAGCCTTTTGGAGCTGAAGGACTTGCCTCATCTAGCGGCATTAGCTGTACATATTCCGGATGCTAGCATTATGCCAAGGGGCTTATTCTCTGACAAGTTGAAAAGATATGATATATCAATTGGTGATACCGATTACACTGTTTCTCTCACAGAAATCTTCCAACACACCACTAGATATGGAATATGGGACAGTATGGATGGAACCCTCAATACATTAAAGCTCAAGCTCACCACTAGGCAAGAATTGGACGATGGTCTAAAAATGCTATTGAAGAGATCGGAAGCTTTGTACTTGCATGGGTTGGAGAACGACTTCCAATTCCAGTCGGATAGTGAAGATTTTCAGCAATTGAAACACCTCTATGTTCAAAACATTGCTAAATTTACATACATCATAAATGAGAAGGTTGGGTTGCCAAACTTAACGAGGTTGATTGTGCATGAATTTGGCTCAAGATTCTTGTTTTCATCTTCCACGGCTAGAAGTGTTGTGCCTTGGCCCGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

207

Amino Acids

23.6

Weight (kDa)

6.66

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018126)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G130200_v2.0.a1
pyrus_communis	pycom15g06580
rosa_multiflora	Rmu_sc0002460.1_g000019
rosa_roxburghii	Rroxscaffold_2G00132360 Rroxscaffold_5G00341130 Rroxscaffold_5G00342690
rosa_samantha	Rh4BG075100 Rh5BG123900 Rh5CG057900 Rh5CG135200 Rh7CG472800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	491, 554
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	159, 401
AfiI	CCNNNNNNNGG	2 cut(s)	73, 76
AgsI	TTSAA	5 cut(s)	31, 211, 382, 463, 479
AluBI	AGCT	7 cut(s)	27, 63, 124, 155, 331, 337, 395
AluI	AGCT	7 cut(s)	27, 63, 124, 155, 331, 337, 395
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	608
ApoI	RAATTY	2 cut(s)	491, 554
Asp700I	GAANNNNTTC	2 cut(s)	422, 450
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	82, 245, 331
AsuNHI	GCTAGC	2 cut(s)	110, 173
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	3 cut(s)	66, 302, 356
BceAI	ACGGC	1 cut(s)	603
BfaI	CTAG	7 cut(s)	38, 111, 143, 174, 282, 345, 591
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	160
BmtI	GCTAGC	2 cut(s)	114, 177
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	3 cut(s)	67, 317, 547
BsaJI	CCNNGG	3 cut(s)	185, 585, 605
BsaWI	WCCGGW	2 cut(s)	92, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 76
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	185, 585, 605
BseGI	GGATG	2 cut(s)	175, 313
BseLI	CCNNNNNNNGG	2 cut(s)	73, 76
BseMI	GCAATG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	93, 167
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	73, 76
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	610
Bsp13I	TCCGGA	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	313
BspOI	GCTAGC	2 cut(s)	114, 177
BsrDI	GCAATG	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	185, 585, 605
BssMI	GATC	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	185, 605
Bst4CI	ACNGT	2 cut(s)	250, 302
Bst6I	CTCTTC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	112, 175
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	175, 313
BstKTI	GATC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstPAI	GACNNNNGTC	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	175, 313
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	112, 175
Cfr13I	GGNCC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	158, 400
CviAII	CATG	2 cut(s)	407, 551
CviQI	GTAC	2 cut(s)	158, 400
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	185, 605
Eco57I	CTGAAG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	185, 605
ErhI	CCWWGG	2 cut(s)	185, 605
FaeI	CATG	2 cut(s)	410, 554
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	406, 550
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	182, 320
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	7 cut(s)	38, 111, 143, 174, 282, 345, 591
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	2 cut(s)	93, 167
Hin1II	CATG	2 cut(s)	410, 554
HindIII	AAGCTT	2 cut(s)	25, 393
HinfI	GANTC	2 cut(s)	87, 567
HpaII	CCGG	2 cut(s)	93, 167
HphI	GGTGA	3 cut(s)	82, 245, 331
Hpy188I	TCNGA	3 cut(s)	202, 391, 439
Hpy188III	TCNNGA	3 cut(s)	38, 167, 564
HpyAV	CCTTC	3 cut(s)	77, 121, 508
HpyCH4III	ACNGT	2 cut(s)	250, 302
HpyCH4V	TGCA	2 cut(s)	406, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	410, 554
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	106, 180, 446
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	7 cut(s)	38, 111, 143, 174, 282, 345, 591
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	5 cut(s)	53, 259, 394, 458, 573
MfeI	CAATTG	2 cut(s)	228, 458
MluCI	AATT	6 cut(s)	228, 353, 428, 458, 491, 554
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	3 cut(s)	295, 393, 417
MnlI	CCTC	4 cut(s)	147, 326, 479, 531
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	2 cut(s)	422, 450
MseI	TTAA	2 cut(s)	326, 533
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	2 cut(s)	93, 167
MunI	CAATTG	2 cut(s)	228, 458
Mva1269I	GAATGC	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	386
NheI	GCTAGC	2 cut(s)	110, 173
NlaIII	CATG	2 cut(s)	410, 554
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	422, 450
PfeI	GAWTC	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	609
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
RsaI	GTAC	2 cut(s)	159, 401
RsaNI	GTAC	2 cut(s)	158, 400
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	326, 533
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	3 cut(s)	46, 332, 562
SmoI	CTYRAG	3 cut(s)	46, 332, 562
Sse9I	AATT	6 cut(s)	228, 353, 428, 458, 491, 554
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	7 cut(s)	38, 111, 143, 174, 282, 345, 591
StyI	CCWWGG	2 cut(s)	185, 605
TaaI	ACNGT	2 cut(s)	250, 302
TasI	AATT	6 cut(s)	228, 353, 428, 458, 491, 554
TatI	WGTACW	2 cut(s)	157, 399
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	326, 533
Tru9I	TTAA	2 cut(s)	326, 533
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	567, 567
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	491, 554
XbaI	TCTAGA	1 cut(s)	37
XmnI	GAANNNNTTC	2 cut(s)	422, 450
XspI	CTAG	7 cut(s)	38, 111, 143, 174, 282, 345, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.