Rmu_sc0002460.1_g000019

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
OG0018126
Physical Location & Seq
Forward (+)
65645 .. 65968
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000019.1.cds

Sequence Viewer

Length: 324 bp
atgggaaatagctttaaccgatgggaggctaatgaagtcatcagtatagagaaaaataatgcaagccttttagagctcaagcacttgtctaagctaagcgccttggatatacatatgttggatgctaacattcttccaacaaatttgttctctgatgcattggaaaggtaccaaatttatgttggtgctgcttggaactgggatgatgtggatgcaaacctcaacacactaaaactcaagctcactaccagcaatgctttgtaccaatctggtttgaatatgttgctgaagagaactgacgagttacacttaaatgggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

107

Amino Acids

12.15

Weight (kDa)

5.19

Isoelectric Point (pI)

21.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 142, 174
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 2 cut(s) 170, 263
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 4 cut(s) 12, 76, 94, 241
AluI AGCT 4 cut(s) 12, 76, 94, 241
Alw21I GWGCWC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 142, 174
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 1 cut(s) 189
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 3 cut(s) 112, 145, 202
BmuI ACTGGG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 62, 221
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 4 cut(s) 127, 208, 217, 324
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 78
Bsp1720I GCTNAGC 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 90, 95
BstF5I GGATG 4 cut(s) 127, 208, 217, 324
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 175
BtsCI GGATG 4 cut(s) 127, 208, 217, 324
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 169, 262
CviJI RGCY 6 cut(s) 12, 29, 66, 76, 94, 241
CviKI_1 RGCY 6 cut(s) 12, 29, 66, 76, 94, 241
CviQI GTAC 2 cut(s) 169, 262
DdeI CTNAG 2 cut(s) 90, 95
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 6 cut(s) 47, 110, 114, 116, 180, 281
FauNDI CATATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 3 cut(s) 134, 215, 224
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 102
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 62, 158, 215
HpyF3I CTNAG 2 cut(s) 90, 95
HspAI GCGC 1 cut(s) 99
KpnI GGTACC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 184, 255, 262
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 3 cut(s) 112, 145, 202
MaeIII GTNAC 1 cut(s) 303
MboII GAAGA 2 cut(s) 125, 301
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 142, 174
MmeI TCCRAC 2 cut(s) 99, 161
MnlI CCTC 2 cut(s) 19, 230
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 2 cut(s) 15, 311
MslI CAYNNNNRTG 1 cut(s) 312
NdeI CATATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 160
PkrI GCNGC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 170
RsaI GTAC 2 cut(s) 170, 263
RsaNI GTAC 2 cut(s) 169, 262
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 15, 311
SatI GCNGC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 14, 78, 96, 170, 222, 243
SfaNI GCATC 3 cut(s) 112, 145, 202
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 77, 236
SmoI CTYRAG 2 cut(s) 77, 236
Sse9I AATT 2 cut(s) 142, 174
SstI GAGCTC 1 cut(s) 78
StyI CCWWGG 1 cut(s) 102
TasI AATT 2 cut(s) 142, 174
Tru1I TTAA 2 cut(s) 15, 311
Tru9I TTAA 2 cut(s) 15, 311
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 48
XapI RAATTY 2 cut(s) 142, 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.