Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018126

Physical Location & Seq

Genomic Coordinates Forward (+)

63437564 .. 63445997

Gene Structure 8434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG472800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATAAATAGCTTTAACAAGTGGGAGGTTGAAGGTGAAAGAAGTAATGCAAGCCTTTCAGAGCTGAAGCATTTGTCTCAGCTATCTGCATTAGAAGTACATATTCCTAATGCTGACATTCTTCCAGCAAACTTGTTCTCCCACAAGTTAGAAAGATTCAATATAATTATTGGGGATGCATATATGTGGGAGAAACGTATGACTGAGACGACCCTCAACACACTAAAAGTGAAGCTCACTACTGCTAGCATTGAAGAATTGGATGAAGGCCTAAAATTTCTTGTGAAAAGATCAGAAGACTTGTCCTTATATGCGGAGGGCATGAATAACATTGTCCATTCAATGAACACAGAAGATTTTGAGCATCTGAAACATCTGCAACTCCAAAGCAACATTGATTTTAATCATATTATAAACAAGAAGACGAACATATATAAATGGGTTGTGGAATTGGAAGATGAACAATCAGTTTCAACTTTCAAGGTTTCAACTTTAACAGGGGATTCGGTGAAATTTAGAATTACCGGATACGGCGCCATTCCTGGCGACACCGTCTTGGTGTCAAAGCAGCGATTCAAGGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

195

Amino Acids

22.35

Weight (kDa)

5.66

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018126)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G130200_v2.0.a1
pyrus_communis	pycom15g06580
rosa_multiflora	Rmu_sc0002460.1_g000019
rosa_roxburghii	Rroxscaffold_2G00132360 Rroxscaffold_5G00341130 Rroxscaffold_5G00342690
rosa_samantha	Rh4BG075100 Rh5BG123900 Rh5CG057900 Rh5CG135200 Rh7CG472800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	275, 512
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	1 cut(s)	99
AgsI	TTSAA	8 cut(s)	32, 160, 254, 342, 474, 481, 489, 577
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	12, 64, 82, 235
AluI	AGCT	4 cut(s)	12, 64, 82, 235
Alw26I	GTCTC	2 cut(s)	81, 200
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	2 cut(s)	275, 512
AspLEI	GCGC	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	47, 520
AsuNHI	GCTAGC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	303, 428
BbvI	GCAGC	1 cut(s)	580
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	543
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	81, 200
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	521
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	166, 373
BmtI	GCTAGC	1 cut(s)	249
BpiI	GAAGAC	2 cut(s)	303, 428
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	181, 268
BseJI	GATNNNNATC	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	92, 195
BseXI	GCAGC	1 cut(s)	580
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	81, 200
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	290
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	91, 196
BspLI	GGNNCC	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	533
BssMI	GATC	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	553
BstACI	GRCGYC	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	52, 247
BstDEI	CTNAG	2 cut(s)	78, 204
BstF5I	GGATG	2 cut(s)	181, 268
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	81, 200
BstMBI	GATC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	2 cut(s)	303, 428
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	181, 268
Cac8I	GCNNGC	2 cut(s)	52, 247
CfoI	GCGC	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	12, 54, 64, 82, 235, 270
CviKI_1	RGCY	6 cut(s)	12, 54, 64, 82, 235, 270
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	78, 204
DinI	GGCGCC	1 cut(s)	535
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
Eco147I	AGGCCT	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	181
EgeI	GGCGCC	1 cut(s)	535
EheI	GGCGCC	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	325
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	2 cut(s)	188, 275
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	536
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	3 cut(s)	156, 503, 573
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	47, 520
Hpy188I	TCNGA	3 cut(s)	61, 295, 369
HpyAV	CCTTC	2 cut(s)	26, 260
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	50, 89, 179, 379
HpyF3I	CTNAG	2 cut(s)	78, 204
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	1 cut(s)	534
KasI	GGCGCC	1 cut(s)	533
Kzo9I	GATC	1 cut(s)	290
LpnPI	CCDG	5 cut(s)	138, 483, 528, 538, 555
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	166, 373
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	6 cut(s)	113, 266, 308, 365, 433, 467
MluCI	AATT	6 cut(s)	165, 257, 275, 449, 512, 519
Mly113I	GGCGCC	1 cut(s)	534
MnlI	CCTC	3 cut(s)	19, 224, 310
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	4 cut(s)	15, 402, 494, 586
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
NarI	GGCGCC	1 cut(s)	534
NdeII	GATC	1 cut(s)	290
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	535
NsiI	ATGCAT	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	156, 503, 573
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	570
PluTI	GGCGCC	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	4 cut(s)	15, 402, 494, 586
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	543
SetI	ASST	8 cut(s)	14, 30, 37, 66, 84, 199, 237, 486
SfaNI	GCATC	2 cut(s)	166, 373
SfoI	GGCGCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	6 cut(s)	165, 257, 275, 449, 512, 519
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	314
SspDI	GGCGCC	1 cut(s)	533
SspMI	CTAG	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	199
TasI	AATT	6 cut(s)	165, 257, 275, 449, 512, 519
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	3 cut(s)	156, 503, 573
Tru1I	TTAA	4 cut(s)	15, 402, 494, 586
Tru9I	TTAA	4 cut(s)	15, 402, 494, 586
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	4 cut(s)	279, 338, 359, 474
Tth111I	GACNNNGTC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	275, 512
XspI	CTAG	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.