pycom15g06750

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
4159797 .. 4160270
474 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGATTGTTAGAAACAGAAAGCTCAAGGAGAGTGGTACTGCTGGCAATGTGAATCTGGATGACTATCAACCCATTGATCCTTCTCCGAGTTCGAAAGCTTCCATCAAACCTGGTCCAATCGAGCACGGCGCACCTATAATCCCGTACATTCCAAAGCCTTCGCCTCCTGCTCGTCCCAATCCCGGCGGTACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.84

Weight (kDa)

9.6

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01075
fragaria_vesca FvH4_2g33280
malus_domestica MD08G1087000.v1.1 MD15G1071700.v1.1
prunus_persica Prupe.1G424700_v2.0.a1
pyrus_communis pycom15g06750
rosa_chinensis RchiOBHm_Chr6g0309361
rosa_laevigata RLG00000010573
rosa_roxburghii Rroxscaffold_7G00159470
rosa_rugosa Rorug06G0371500 Rorug06G0371500
rosa_samantha Rh6AG484500 Rh6BG493800 Rh6CG498700 Rh6DG485000
rosa_wichuraiana Rw6G042200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 71
AfaI GTAC 3 cut(s) 37, 146, 190
AfiI CCNNNNNNNGG 1 cut(s) 182
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 22, 98
AluI AGCT 2 cut(s) 22, 98
Alw21I GWGCWC 1 cut(s) 126
AlwI GGATC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 183
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 111, 183
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 111, 183
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 109, 181
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 3 cut(s) 36, 145, 189
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviJI RGCY 3 cut(s) 22, 98, 157
CviKI_1 RGCY 3 cut(s) 22, 98, 157
CviQI GTAC 3 cut(s) 36, 145, 189
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 1 cut(s) 137
FaqI GGGAC 1 cut(s) 159
FokI GGATG 1 cut(s) 71
GlaI GCGC 1 cut(s) 130
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 90, 168
HpyF3I CTNAG 1 cut(s) 195
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 27, 41, 96, 123, 180
MabI ACCWGGT 1 cut(s) 109
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 126
MnlI CCTC 1 cut(s) 174
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 111, 183
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 76
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 1 cut(s) 113
RsaI GTAC 3 cut(s) 37, 146, 190
RsaNI GTAC 3 cut(s) 36, 145, 189
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 111, 183
SduI GDGCHC 1 cut(s) 126
SetI ASST 4 cut(s) 24, 100, 112, 136
SexAI ACCWGGT 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 109, 181
TaqI TCGA 2 cut(s) 92, 120
TfiI GAWTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.