pycom15g07780

CYPRO4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014939
Physical Location & Seq
Forward (+)
4815349 .. 4816533
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGGAAATAGAATTTCAGCTCCAAGACTGCTGAAGCTGACTCCCCTGGATTCACATTTGGCGGGCACAAATAACAAGTTTCGTAATGCTCAGTTTTCGTGGGTCACGGAGAACGGGAAGCAGGAGCGACATCTGGTTGCAACTGTGGGCAAATTTAGTGTGGTTTGGAACTTTCAACAGGTGAAAGATGGCTCACACGAGTGCTACCGCAACCAGCAGGGCTTGAAGAGCTGCTACTGCTACAAGATAGTCCCCAAGGATGACTCCATTGTCGACAGTCGCTTCATGCATGACAAGTTTGCAGTTACTGACTCACCTGAGGCCCCACTTGTGATTGCAACCCCTCTGAAAGTCAGCTCCTTCAGCATATCCAGTACCAATAGACAATTGTCTCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VID27

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

9.44

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33400
fragaria_vesca FvH4_2g34470
malus_domestica MD08G1101800.v1.1 MD15G1083300.v1.1
prunus_persica Prupe.1G435800_v2.0.a1
pyrus_communis pycom08g08230 pycom08g08240 pycom15g07780
rosa_chinensis RchiOBHm_Chr6g0307901
rosa_laevigata RLG00000010688
rosa_rugosa Rorug06G0361500
rosa_samantha Rh6AG470600 Rh6BG481600 Rh6CG487000 Rh6DG473100
rosa_wichuraiana Rw6G041090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 273
AciI CCGC 2 cut(s) 62, 208
AcsI RAATTY 2 cut(s) 12, 152
AcuI CTGAAG 2 cut(s) 53, 346
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 176, 226
AjnI CCWGG 1 cut(s) 45
AleI CACNNNNGTG 1 cut(s) 199
AluBI AGCT 4 cut(s) 20, 37, 231, 357
AluI AGCT 4 cut(s) 20, 37, 231, 357
Alw26I GTCTC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 2 cut(s) 12, 152
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 193, 306
AxyI CCTNAGG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BauI CACGAG 1 cut(s) 197
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 395
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 45, 255
Bse1I ACTGG 1 cut(s) 372
Bse21I CCTNAGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 45, 255
BseGI GGATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 104, 309
BseNI ACTGG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 323
BslFI GGGAC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 68
BspACI CCGC 2 cut(s) 62, 208
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 2 cut(s) 103, 310
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 399
BspQI GCTCTTC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 45, 255
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 145, 278
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 90, 318
BstF5I GGATG 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 396
BstMWI GCNNNNNNNGC 3 cut(s) 228, 237, 363
BstNI CCWGG 1 cut(s) 47
BstPAI GACNNNNGTC 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 286, 290
CviJI RGCY 7 cut(s) 20, 37, 192, 222, 231, 323, 357
CviKI_1 RGCY 7 cut(s) 20, 37, 192, 222, 231, 323, 357
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 2 cut(s) 90, 318
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 53, 346
Eco81I CCTNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 289, 293
FaiI YATR 3 cut(s) 287, 291, 368
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 285, 289
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 323
Hin1II CATG 2 cut(s) 289, 293
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 4 cut(s) 40, 50, 263, 311
HphI GGTGA 2 cut(s) 193, 306
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 348
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 145, 278
HpyCH4V TGCA 5 cut(s) 140, 289, 302, 338, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 237, 363
HpyF3I CTNAG 2 cut(s) 90, 318
Hsp92II CATG 2 cut(s) 289, 293
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 3 cut(s) 25, 124, 362
LpnPI CCDG 9 cut(s) 32, 59, 107, 119, 164, 203, 227, 330, 385
Lsp1109I GCAGC 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 103, 304
MboII GAAGA 1 cut(s) 238
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 12, 152, 386
MlyI GAGTC 3 cut(s) 34, 257, 305
MnlI CCTC 2 cut(s) 313, 354
Mph1103I ATGCAT 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 228, 237, 363
NlaIII CATG 2 cut(s) 289, 293
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 3 cut(s) 34, 257, 305
PpsI GAGTC 3 cut(s) 34, 257, 305
PshAI GACNNNNGTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 199
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 221
SatI GCNGC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 3 cut(s) 34, 257, 305
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 68
SetI ASST 6 cut(s) 22, 39, 183, 233, 319, 359
SfcI CTRYAG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 199
Sse9I AATT 3 cut(s) 12, 152, 386
SsiI CCGC 2 cut(s) 62, 208
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 145, 278
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 12, 152, 386
TfiI GAWTC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 274
TspGWI ACGGA 1 cut(s) 122
XapI RAATTY 2 cut(s) 12, 152
XmiI GTMKAC 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.